Result of FASTA (ccds) for pF1KE0438
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0438, 328 aa
  1>>>pF1KE0438 328 - 328 aa - 328 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1389+/-0.000815; mu= 16.5991+/- 0.049
 mean_var=62.0671+/-12.497, 0's: 0 Z-trim(106.8): 20  B-trim: 85 in 1/50
 Lambda= 0.162796
 statistics sampled from 9210 (9221) to 9210 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.283), width:  16
 Scan time:  2.360

The best scores are:                                      opt bits E(32554)
CCDS6609.1 GRHPR gene_id:9380|Hs108|chr9           ( 328) 2155 514.6 4.3e-146
CCDS904.1 PHGDH gene_id:26227|Hs108|chr1           ( 533)  467 118.3 1.4e-26
CCDS43203.1 CTBP1 gene_id:1487|Hs108|chr4          ( 429)  318 83.2   4e-16
CCDS3348.1 CTBP1 gene_id:1487|Hs108|chr4           ( 440)  318 83.2 4.1e-16
CCDS7643.1 CTBP2 gene_id:1488|Hs108|chr10          ( 445)  314 82.3   8e-16
CCDS7644.1 CTBP2 gene_id:1488|Hs108|chr10          ( 985)  314 82.5 1.6e-15


>>CCDS6609.1 GRHPR gene_id:9380|Hs108|chr9                (328 aa)
 initn: 2155 init1: 2155 opt: 2155  Z-score: 2736.4  bits: 514.6 E(32554): 4.3e-146
Smith-Waterman score: 2155; 100.0% identity (100.0% similar) in 328 aa overlap (1-328:1-328)

               10        20        30        40        50        60
pF1KE0 MRPVRLMKVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MRPVRLMKVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 DHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 DHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 TTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 LYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 INISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 INISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHR
              250       260       270       280       290       300

              310       320        
pF1KE0 TRNTMSLLAANNLLAGLRGEPMPSELKL
       ::::::::::::::::::::::::::::
CCDS66 TRNTMSLLAANNLLAGLRGEPMPSELKL
              310       320        

>>CCDS904.1 PHGDH gene_id:26227|Hs108|chr1                (533 aa)
 initn: 333 init1: 191 opt: 467  Z-score: 590.6  bits: 118.3 E(32554): 1.4e-26
Smith-Waterman score: 470; 29.2% identity (60.2% similar) in 319 aa overlap (6-322:6-312)

               10        20        30        40        50        60
pF1KE0 MRPVRLMKVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLS
            : ::...  .    :  :  ..   ::. .    .  .::   .   .::.   .
CCDS90 MAFANLRKVLISDSLDPCCRKILQDGGLQVVEKQN----LSKEELIAELQDCEGLIVRSA
               10        20        30            40        50      

               70        80        90       100       110       120
pF1KE0 DHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLL
        .:   ...::  .:.:..  ..:.:.. :.   ..:: :  ::.  . ..:::. ....
CCDS90 TKVTADVINAA-EKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIM
         60         70        80        90       100       110     

              130       140       150       160       170       180
pF1KE0 TTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRF
          :..:.:   .:.: :   : .   :  :. .:.::.::::::. .: :.. ::.. .
CCDS90 CLARQIPQATASMKDGKWERKKFM---GTELNGKTLGILGLGRIGREVATRMQSFGMKTI
         120       130          140       150       160       170  

                190       200       210       220       230        
pF1KE0 LYTGRQP--RPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETA
          : .:   :: .: : .. .   :.    :::.:   : :.: :: : . : . :. .
CCDS90 ---GYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGV
               180       190       200       210       220         

      240       250       260       270       280       290        
pF1KE0 VFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSAT
         .: .:: .:..  : .:: ::. :.:.::: . :: : .. :.  .: .  ::.:..:
CCDS90 RVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHENVISCPHLGAST
     230       240       250       260        270       280        

      300       310       320                                      
pF1KE0 HRTRNTMSLLAANNLLAGLRGEPMPSELKL                              
       .....  .   : ...  ..:. .                                    
CCDS90 KEAQSRCGEEIAVQFVDMVKGKSLTGVVNAQALTSAFSPHTKPWIGLAEALGTLMRAWAG
      290       300       310       320       330       340        

>>CCDS43203.1 CTBP1 gene_id:1487|Hs108|chr4               (429 aa)
 initn: 346 init1: 246 opt: 318  Z-score: 402.9  bits: 83.2 E(32554): 4e-16
Smith-Waterman score: 318; 27.7% identity (55.6% similar) in 311 aa overlap (23-327:37-337)

                       10        20        30        40        50  
pF1KE0         MRPVRLMKVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGA
                                     .: .: :...   : . :  : :...:   
CCDS43 PIMNGPLHPRPLVALLDGRDCTVEMPILKDVATVAFCDAQ---STQEIHEKVLNEAV---
         10        20        30        40           50        60   

             60        70        80        90       100       110  
pF1KE0 HGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTA
        : :   .  . .. :.   : :..:  .. :.:.. .      :: :  .: . .. ::
CCDS43 -GALMYHTITLTREDLEKFKA-LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETA
                70        80         90       100       110        

            120       130        140       150          160        
pF1KE0 ELAVSLLLTTCRRLPEAIEEVKNGGWT-SWKPLWLCGYGLTQ---STVGIIGLGRIGQAI
       . ..  .:.  ::     . ...:  . : . .   . : ..    :.:::::::.:::.
CCDS43 DSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAV
      120       130       140       150       160       170        

      170       180       190       200       210       220        
pF1KE0 ARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNK
       : : : :: . ..:        : :    .  .  .:  .:: ... :.:.  .. : : 
CCDS43 ALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIN-
      180       190       200       210       220       230        

      230        240       250       260       270       280       
pF1KE0 DF-FQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNH-PLLTLK
       ::  ..:.. : ..: .:: .:..  : :::  :.: .:.:::   ::.  .. ::    
CCDS43 DFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAP
       240       250       260       270       280       290       

        290       300       310       320                          
pF1KE0 NCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSELKL                  
       : .  :: .  ....   :   :: ..  .. :. .:. ::                   
CCDS43 NLICTPHAAWYSEQASIEMREEAAREIRRAITGR-IPDSLKNCVNKDHLTAATHWASMDP
       300       310       320       330        340       350      

CCDS43 AVVHPELNGAAYRYPPGVVGVAPTGIPAAVEGIVPSAMSLSHGLPPVAHPPHAPSPGQTV
        360       370       380       390       400       410      

>>CCDS3348.1 CTBP1 gene_id:1487|Hs108|chr4                (440 aa)
 initn: 346 init1: 246 opt: 318  Z-score: 402.7  bits: 83.2 E(32554): 4.1e-16
Smith-Waterman score: 318; 27.7% identity (55.6% similar) in 311 aa overlap (23-327:48-348)

                       10        20        30        40        50  
pF1KE0         MRPVRLMKVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGA
                                     .: .: :...   : . :  : :...:   
CCDS33 PIMNGPLHPRPLVALLDGRDCTVEMPILKDVATVAFCDAQ---STQEIHEKVLNEAV---
        20        30        40        50           60        70    

             60        70        80        90       100       110  
pF1KE0 HGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTA
        : :   .  . .. :.   : :..:  .. :.:.. .      :: :  .: . .. ::
CCDS33 -GALMYHTITLTREDLEKFKA-LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETA
               80        90        100       110       120         

            120       130        140       150          160        
pF1KE0 ELAVSLLLTTCRRLPEAIEEVKNGGWT-SWKPLWLCGYGLTQ---STVGIIGLGRIGQAI
       . ..  .:.  ::     . ...:  . : . .   . : ..    :.:::::::.:::.
CCDS33 DSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAV
     130       140       150       160       170       180         

      170       180       190       200       210       220        
pF1KE0 ARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNK
       : : : :: . ..:        : :    .  .  .:  .:: ... :.:.  .. : : 
CCDS33 ALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIN-
     190       200       210       220       230       240         

      230        240       250       260       270       280       
pF1KE0 DF-FQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNH-PLLTLK
       ::  ..:.. : ..: .:: .:..  : :::  :.: .:.:::   ::.  .. ::    
CCDS33 DFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAP
      250       260       270       280       290       300        

        290       300       310       320                          
pF1KE0 NCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSELKL                  
       : .  :: .  ....   :   :: ..  .. :. .:. ::                   
CCDS33 NLICTPHAAWYSEQASIEMREEAAREIRRAITGR-IPDSLKNCVNKDHLTAATHWASMDP
      310       320       330       340        350       360       

CCDS33 AVVHPELNGAAYRYPPGVVGVAPTGIPAAVEGIVPSAMSLSHGLPPVAHPPHAPSPGQTV
       370       380       390       400       410       420       

>>CCDS7643.1 CTBP2 gene_id:1488|Hs108|chr10               (445 aa)
 initn: 284 init1: 235 opt: 314  Z-score: 397.6  bits: 82.3 E(32554): 8e-16
Smith-Waterman score: 314; 27.9% identity (55.4% similar) in 312 aa overlap (23-327:54-354)

                       10        20        30        40        50  
pF1KE0         MRPVRLMKVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGA
                                     :: .: :...   : . :  : :...: ::
CCDS76 QIMNGPLHPRPLVALLDGRDCTVEMPILKDLATVAFCDAQ---STQEIHEKVLNEAV-GA
            30        40        50        60           70          

             60        70        80        90       100       110  
pF1KE0 HGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTA
            .   . : . . :    :.::  .. : :.. .    . :: :   :.. .. ::
CCDS76 MMYHTITLTREDLEKFKA----LRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETA
      80        90           100       110       120       130     

            120       130        140       150          160        
pF1KE0 ELAVSLLLTTCRRLPEAIEEVKNGGWT-SWKPLWLCGYGLTQ---STVGIIGLGRIGQAI
       . ..  .:.  ::     . ...:  . : . .   . : ..    :.:.::.:: :::.
CCDS76 DSTICHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAV
         140       150       160       170       180       190     

      170       180        190       200       210       220       
pF1KE0 ARRLKPFGVQRFLYTGR-QPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCN
       : : : :: . ..:    :   :..   :  . .  .:  ::: . . :.:.  .. : :
CCDS76 AVRAKAFGFSVIFYDPYLQDGIERSLGVQRVY-TLQDLLYQSDCVSLHCNLNEHNHHLIN
         200       210       220        230       240       250    

       230        240       250       260       270       280      
pF1KE0 KDF-FQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNH-PLLTL
        :: ...:.. : ..: .:: .:..  : :::  :.: .:.:::   ::.   . ::   
CCDS76 -DFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDA
           260       270       280       290       300       310   

         290       300       310       320                         
pF1KE0 KNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSELKL                 
        : .  :: .  ....   :   ::...  .. :. .:  :.                  
CCDS76 PNLICTPHTAWYSEQASLEMREAAATEIRRAITGR-IPESLRNCVNKEFFVTSAPWSVID
           320       330       340        350       360       370  

CCDS76 QQAIHPELNGATYRYPPGIVGVAPGGLPAAMEGIIPGGIPVTHNLPTVAHPSQAPSPNQP
            380       390       400       410       420       430  

>>CCDS7644.1 CTBP2 gene_id:1488|Hs108|chr10               (985 aa)
 initn: 235 init1: 235 opt: 314  Z-score: 392.4  bits: 82.5 E(32554): 1.6e-15
Smith-Waterman score: 314; 27.9% identity (55.4% similar) in 312 aa overlap (23-327:594-894)

                       10        20        30        40        50  
pF1KE0         MRPVRLMKVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGA
                                     :: .: :...   : . :  : :...: ::
CCDS76 QIMNGPLHPRPLVALLDGRDCTVEMPILKDLATVAFCDAQ---STQEIHEKVLNEAV-GA
           570       580       590       600          610          

             60        70        80        90       100       110  
pF1KE0 HGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTA
            .   . : . . :    :.::  .. : :.. .    . :: :   :.. .. ::
CCDS76 MMYHTITLTREDLEKFKA----LRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETA
     620       630           640       650       660       670     

            120       130        140       150          160        
pF1KE0 ELAVSLLLTTCRRLPEAIEEVKNGGWT-SWKPLWLCGYGLTQ---STVGIIGLGRIGQAI
       . ..  .:.  ::     . ...:  . : . .   . : ..    :.:.::.:: :::.
CCDS76 DSTICHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAV
         680       690       700       710       720       730     

      170       180        190       200       210       220       
pF1KE0 ARRLKPFGVQRFLYTGR-QPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCN
       : : : :: . ..:    :   :..   :  . .  .:  ::: . . :.:.  .. : :
CCDS76 AVRAKAFGFSVIFYDPYLQDGIERSLGVQRVY-TLQDLLYQSDCVSLHCNLNEHNHHLIN
         740       750       760        770       780       790    

       230        240       250       260       270       280      
pF1KE0 KDF-FQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNH-PLLTL
        :: ...:.. : ..: .:: .:..  : :::  :.: .:.:::   ::.   . ::   
CCDS76 -DFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDA
           800       810       820       830       840       850   

         290       300       310       320                         
pF1KE0 KNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSELKL                 
        : .  :: .  ....   :   ::...  .. :. .:  :.                  
CCDS76 PNLICTPHTAWYSEQASLEMREAAATEIRRAITGR-IPESLRNCVNKEFFVTSAPWSVID
           860       870       880        890       900       910  

CCDS76 QQAIHPELNGATYRYPPGIVGVAPGGLPAAMEGIIPGGIPVTHNLPTVAHPSQAPSPNQP
            920       930       940       950       960       970  




328 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 08:58:52 2016 done: Thu Nov  3 08:58:52 2016
 Total Scan time:  2.360 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com