GENSCAN 1.0	Date run:  7-Nov-116	Time: 21:05:31

Sequence gi568815587r:117740319_117942776 : 202458 bp : 49.55% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   7062   7184  123  2  0   59   97    36 0.472   1.77
 1.02 Intr +   8764   8951  188  0  2  100   99    56 0.611   6.39
 1.03 Intr +  18423  18489   67  0  1   69   91     6 0.025  -2.09
 1.04 Intr +  25565  25660   96  1  0   59   87    46 0.471   1.81
 1.05 Intr +  26747  26926  180  1  0  101   51   107 0.603   8.36
 1.06 Term +  33000  33179  180  2  0  100   54    86 0.562   4.01
 1.07 PlyA +  33288  33293    6                              -0.45

 2.07 PlyA -  33918  33913    6                               1.05
 2.06 Term -  35656  35634   23  2  2  105   32     8 0.432  -4.63
 2.05 Intr -  36619  36473  147  2  0   89  110   169 0.990  19.41
 2.04 Intr -  40492  40175  318  2  0  115  110   602 0.998  61.03
 2.03 Intr -  47851  47680  172  1  1   68   60    64 0.032   1.12
 2.02 Intr -  56300  56177  124  1  1   91   35    44 0.067  -0.01
 2.01 Init -  59508  59438   71  0  2   94   95    41 0.259   5.92
 2.00 Prom -  62795  62756   40                              -3.36

 3.13 PlyA -  63045  63040    6                              -0.45
 3.12 Term -  64823  64630  194  0  2   35   48   142 0.669   2.48
 3.11 Intr -  67438  67334  105  2  0   51   84    52 0.508   1.29
 3.10 Intr -  74082  73971  112  0  1   83   30   105 0.120   4.15
 3.09 Intr -  78994  78856  139  0  1   69   61    -2 0.052  -4.33
 3.08 Intr -  80378  80348   31  0  1  124   85    15 0.196   1.99
 3.07 Intr -  82399  82088  312  2  0  100   89   274 0.954  24.86
 3.06 Intr -  94858  94762   97  1  1   92   59    52 0.023   2.28
 3.05 Intr -  96947  96892   56  0  2   97   89   -18 0.110  -2.10
 3.04 Intr - 100050 100001   50  2  2  131   48    94 0.359   8.02
 3.03 Intr - 100866 100830   37  1  1  116  107    -7 0.994   1.32
 3.02 Intr - 101547 101473   75  1  0  107   97    65 0.998   8.79
 3.01 Init - 102458 102401   58  2  1  106  103   141 0.995  16.88
 3.00 Prom - 107782 107743   40                              -4.66

 4.00 Prom + 110931 110970   40                              -5.06
 4.01 Init + 114296 114436  141  1  0   81   53    70 0.653   2.93
 4.02 Term + 116135 116161   27  1  0  106   55    55 0.437   2.07
 4.03 PlyA + 119393 119398    6                               1.05

 5.02 PlyA - 122957 122952    6                               1.05
 5.01 Sngl - 135458 135276  183  2  0   96   48   167 0.573   6.56
 5.00 Prom - 148803 148764   40                              -3.76

 6.17 PlyA - 148851 148846    6                               1.05
 6.16 Term - 161546 161325  222  2  0   61   50   144 0.923   4.82
 6.15 Intr - 163489 163337  153  1  0  115   94   123 0.995  15.87
 6.14 Intr - 163783 163641  143  2  2   28   94    97 0.914   4.37
 6.13 Intr - 165418 165320   99  2  0   62   95    26 0.564   0.78
 6.12 Intr - 168466 168294  173  0  2  112   93   419 0.998  44.39
 6.11 Intr - 169650 169488  163  1  1   89   86   114 0.965  10.33
 6.10 Intr - 170432 170389   44  1  2  139   68   -11 0.461  -0.12
 6.09 Intr - 171542 171450   93  1  0  106   80    25 0.836   2.58
 6.08 Intr - 173588 173459  130  0  1  114   76   119 0.999  13.05
 6.07 Intr - 174196 174074  123  2  0  130   91   156 0.996  20.66
 6.06 Intr - 176956 176852  105  2  0  115   65   137 0.599  14.29
 6.05 Intr - 177503 177397  107  1  2  108   59   -29 0.919  -3.94
 6.04 Intr - 178128 178091   38  0  2   51  110    47 0.580   0.26
 6.03 Intr - 178520 178219  302  0  2   73   76   229 0.877  16.65
 6.02 Intr - 185967 185852  116  2  2  112   89    82 0.351  10.79
 6.01 Init - 198867 198761  107  0  2   70   93    43 0.546   2.70

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815587r:117740319_117942776|GENSCAN_predicted_peptide_1|277_aa
MHSILVISMAWVTSDQSVNELSLSFPHPSSITHHQHNTERKVEHLHSQRGCRGRKDEAQN
YQLLLQPPLPWFPGPNQARRGLSRDEGLETCWKPDAVAELCLPRIEPYRHGHLRLQIHIA
KCFPEKLHFITKETPSKPHFFRAKQEQMVAFFQQPRKQMCLGGFSKMMPVNGLYKPESTI
QTEGDAGRRAQMEKWPKLSPRAEVKLPWAQILPRHFLRLLLDLWFVKLSPALQIQKSKST
QFLWLRKLILKCQREVSLALPSSINLQGNLPCNLPLP

>gi568815587r:117740319_117942776|GENSCAN_predicted_CDS_1|834_bp
atgcacagcatccttgttatttccatggcctgggtgaccagtgaccagtcagtcaatgag
ctctcactgtcctttccccatccctcctcaatcacgcaccaccagcacaatactgaacgc
aaggtagaacatcttcattcccagagaggatgcagaggacgaaaggatgaggcccagaac
taccagctcctcctccagccccctctgccctggttccctggtcccaaccaggccagacgg
ggcttgagccgggacgagggtttggaaacatgctggaaaccagatgctgtggcggagctg
tgccttcccaggatagagccttacagacacggacatctgagacttcagatacatattgcc
aaatgctttccagaaaagcttcacttcatcacaaaagagactccaagcaagccccacttc
ttcagagcaaaacaggagcagatggtggcttttttccagcaaccacggaaacagatgtgt
ttgggaggattcagtaagatgatgccggtgaacgggctttataaaccggagagcaccata
caaaccgaaggtgatgccggccgcagggcacagatggagaagtggcccaagttatctcca
agagctgaagtcaaactgccctgggctcagattctgcctcgtcatttcctcaggctcctg
ctggacttgtggtttgtgaagctgagcccagccctgcagatccagaaatcaaagtcaaca
cagttcctctggctccggaagctgatcctgaagtgtcagagggaagtatccctggctctt
ccatcctccattaaccttcagggcaacttgccatgtaatcttcccctaccatga

>gi568815587r:117740319_117942776|GENSCAN_predicted_peptide_2|284_aa
MGLVLFNPRYDFPRQMLGMSPFHWPRTRRLIPPLCPCVPLPPRTPALARMLAHRMALIRA
LAGGRDHTSSGCLVHALMLSGKLNPLLASVWAQTVSKMQHKGFLVKQQDTVWLVLLWVLN
GLARPEDVGTSLYFVNDSLQQVTFSSSVGVVVPCPAAGSPSAALRWYLATGDDIYDVPHI
RHVHANGTLQLYPFSPSAFNSFIHDNDYFCTAENAAGKIRSPNIRVKAVFREPYTVRVED
QRSMRGNVAVFKCLIPSSVQEYVSVVSWEKDTVSIIPGPLFPML

>gi568815587r:117740319_117942776|GENSCAN_predicted_CDS_2|855_bp
atggggcttgtcttatttaatcctcgctacgactttccaaggcagatgctggggatgtcc
ccattccactggcctcggactcggcggctgattcctccgctatgtccgtgcgtccctctc
ccgccgcggaccccagccctggcgcgaatgttggcgcaccgcatggcgcttatccgcgca
ttggctggaggcagggaccataccagctcaggctgcctggtacatgctctgatgctgtct
gggaaactcaaccctctccttgccagtgtctgggctcagacagtttccaagatgcaacat
aaagggtttttagtgaagcagcaagacaccgtctggctggtcctcctctgggttttgaat
ggacttgcccgccctgaagatgttggcaccagcctctactttgtaaatgactccttgcag
caggtgaccttttccagctccgtgggggtggtggtgccctgcccggccgcgggctccccc
agcgcggcccttcgatggtacctggccacaggggacgacatctacgacgtgccgcacatc
cggcacgtccacgccaacgggacgctgcagctctaccccttctccccctccgccttcaat
agctttatccacgacaatgactacttctgcaccgcggagaacgctgccggcaagatccgg
agccccaacatccgcgtcaaagcagttttcagggaaccctacaccgtccgggtggaggat
caaaggtcaatgcgtggcaacgtggccgtcttcaagtgcctcatcccctcttcagtgcag
gaatatgttagcgttgtatcttgggagaaagacacagtctccatcatcccaggacctttg
tttcccatgctgtaa

>gi568815587r:117740319_117942776|GENSCAN_predicted_peptide_3|421_aa
MELVLVFLCSLLAPMVLASDYQTLRIGGLVFAVVLFSVGILLILSRRCKCSFNQKPRAPG
DEEAQVENLITANDGQQRQLPHPLLCLSVVRAAFGKTQAYGRAQAQPVNPVIMAIKNYLV
TARPGGSPKGDVDPFYYGKPGPLRTLPEPSGPLPPSSGLSQPQVHALCPLSPLVTTGCCG
QAAERDSCWERPPIPLLLPSLSGDYETVRNGGLIFAGLAFIVGLLILLSKSMKMSRNSRG
LEGWRDCGILAPPSVWLPHLGLQAFEGGEGRTGRRTKLQDQEMNRLRSQALESADLDLSP
GLANYELSFMRIRVKRTTKQALFQLYLILKDNLHGGAPIPPKGFSYSVFGRHLLAMAGLQ
AKEASSVEVRGIVVQSDWHVSPGNPTKHWTTVREDQLPTEGVMALDWSCSDLIRIHESIL
F

>gi568815587r:117740319_117942776|GENSCAN_predicted_CDS_3|1266_bp
atggagttggtgctggtcttcctctgcagcctgctggcccccatggtcctggccagtgat
taccagaccctgaggattgggggactggtgttcgctgtggtcctcttctcggttgggatc
ctccttatcctaagtcgcaggtgcaagtgcagtttcaatcagaagccccgggccccagga
gatgaggaagcccaggtggagaacctcatcaccgccaatgatgggcagcagaggcaactc
ccgcatcctttgctctgcctgtcagtggtcagagcggcctttggaaagacacaggcttat
ggtagagctcaagctcaacctgtcaacccagtgatcatggcgattaaaaactatctggtc
acagcaagacctggcggcagccccaagggggacgtggacccgttctactatggtaagcct
gggcccctgcgcacccttcctgagccctcaggaccccttccaccaagcagcggcctctcc
cagccccaggtccatgctctgtgccccttatctcccctggttaccacgggctgctgcggg
caggctgcggagagagacagctgctgggagagaccacccatcccgctcctcttgccctct
ctttccggagactatgagaccgttcgcaatgggggcctgatcttcgctggactggccttc
atcgtggggctcctcatcctcctcagcaaatcaatgaagatgagccgtaacagcagaggc
ctcgaaggctggagggattgtgggattctggcaccacctagcgtctggcttcctcatctg
ggcctgcaagcttttgagggaggagaggggagaactggcaggagaaccaagctacaggac
caggaaatgaacaggctaaggtcacaggctttggaatcagcagacctggatttgagccct
ggcttagccaattatgaactaagtttcatgcgcatccgtgtgaagagaaccaccaaacag
gctttgttccagctgtatctaatattgaaagataatctccatggaggagcccccatcccg
cccaaaggtttctcatactcagtctttgggcgacacctgctggccatggcaggattacag
gccaaggaggccagttcagtagaagttcgtgggatagtggtccagagtgattggcatgtc
agcccaggaaatccaacaaaacattggacaacagtaagagaagatcagctacctactgag
ggggtgatggcgctggactggagctgctcagacctcatccggattcatgagtctattctg
ttttaa

>gi568815587r:117740319_117942776|GENSCAN_predicted_peptide_4|55_aa
MTRTSQQVQTPCNNSPERQREGEQRAQQGAREVSVEELTFQRNLKSRAQPTDDKL

>gi568815587r:117740319_117942776|GENSCAN_predicted_CDS_4|168_bp
atgacgagaacttcccaacaggtacagacgccatgcaacaatagtccagaaagacagaga
gaaggggagcagagagctcaacagggagctagggaagtttccgtggaggagctgacattc
cagcggaaccttaagagcagggctcagcccacggatgacaagctctga

>gi568815587r:117740319_117942776|GENSCAN_predicted_peptide_5|60_aa
MGLPRHLLQACTLAGPWLLEASPHQCALCHYFLCLCGFVLSGWAKISSFEDGSVGISGPL

>gi568815587r:117740319_117942776|GENSCAN_predicted_CDS_5|183_bp
atgggtctgccgcgtcacctgctgcaagcctgcacgctcgcgggaccgtggctactggag
gcttctccccaccagtgtgctctctgccactacttcctttgtctctgtggcttcgtgctg
tctggctgggctaagatttccagctttgaagatggatcagtgggcatctcaggccctctc
tga

>gi568815587r:117740319_117942776|GENSCAN_predicted_peptide_6|705_aa
MRFLTEDEGHEDTHRVRLFLLCFSGLSSIWNMTVTLCVALTSSSKDPGTCPMPLQVCIPH
LVLQGPWHLPYAPAECISSKNTFSWSISSPGISSWDTSRPGISSPGISSPGISSWDTSGP
GISSPGISSWYTSRPGISRPGISSPGISSPGISSPGISGSGITFQVLIRQVIIRQVSTSN
QGHQGEPRIQTVPTTTIHTGLDDTWLWRITRSLGPIPQPCPLQGTSLPKFTWREGQKQLP
LIGCVLLLIALVVSLIILFQFWQGHTGIRYKEQRESCPKHAVRCDGVVDCKLKSDELGCV
RFDWDKSLLKIYSGSSHQWLPICSSNWNDSYSEKTCQQLGFESAHRTTEVAHRDFANSFS
ILRYNSTIQESLHRSECPSQRYISLQCSHCGLRAMTGRIVGGALASDSKWPWQVSLHFGT
THICGGTLIDAQWVLTAAHCFFVTREKVLEGWKVYAGTSNLHQLPEAASIAEIIINSNYT
DEEDDYDIALMRLSKPLTLSAHIHPACLPMHGQTFSLNETCWITGFGKTRETDDKTSPFL
REVQVNLIDFKKCNDYLVYDSYLTPRMMCAGDLRGGRDSCQGDSGGPLVCEQNNRWYLAG
VTSWGTGCGQRNKPGVYTKVTEVLPWIYSKMETSPVWADASGPGGAIAVLGWIVGFGGCS
FPGPGPSSVKSCSRWLYEHQVLTQTPCWCRGCHQSDCAVANQADN

>gi568815587r:117740319_117942776|GENSCAN_predicted_CDS_6|2118_bp
atgaggttcctcactgaagacgaaggtcatgaggacacgcacagagtcaggctgttcctg
ctctgttttagtggcctgagcagtatttggaacatgacagttacactgtgtgtagccctc
acctcgtcctccaaggaccctggcacctgccctatgcctctgcaggtgtgcatccctcac
ctcgtcctccaaggaccctggcacctgccctatgcccctgcagaatgcatctccagcaag
aacaccttcagctggagcatctccagcccaggcatctccagctgggacacctccaggccg
ggcatctccagcccaggcatctccagcccaggcatctccagctgggacacctccgggccg
ggcatctccagcccaggcatctccagctggtacacctccaggccgggcatctccaggccg
ggcatctccagcccaggcatctccagcccaggcatctccagcccgggcatctccggctct
ggcatcactttccaggtcctcatccggcaggtcatcatccgccaggtcagcaccagcaac
cagggccaccagggagagcccagaattcagactgtccccaccaccacaatacacacaggc
ctggatgatacgtggctttggaggatcactcgaagtttggggcccatcccacagccttgc
cctctccagggtacgagcctgcccaagttcacctggcgggagggccagaagcagctaccg
ctcatcgggtgcgtgctcctcctcattgccctggtggtttcgctcatcatcctcttccag
ttctggcagggccacacagggatcaggtacaaggagcagagggagagctgtcccaagcac
gctgttcgctgtgacggggtggtggactgcaagctgaagagtgacgagctgggctgcgtg
aggtttgactgggacaagtctctgcttaaaatctactctgggtcctcccatcagtggctt
cccatctgtagcagcaactggaatgactcctactcagagaagacctgccagcagctgggt
ttcgagagtgctcaccggacaaccgaggttgcccacagggattttgccaacagcttctca
atcttgagatacaactccaccatccaggaaagcctccacaggtctgaatgcccttcccag
cggtatatctctctccagtgttcccactgcggactgagggccatgaccgggcggatcgtg
ggaggggcgctggcctcggatagcaagtggccttggcaagtgagtctgcacttcggcacc
acccacatctgtggaggcacgctcattgacgcccagtgggtgctcactgccgcccactgc
ttcttcgtgacccgggagaaggtcctggagggctggaaggtgtacgcgggcaccagcaac
ctgcaccagttgcctgaggcagcctccattgccgagatcatcatcaacagcaattacacc
gatgaggaggacgactatgacatcgccctcatgcggctgtccaagcccctgaccctgtcc
gctcacatccaccctgcttgcctccccatgcatggacagacctttagcctcaatgagacc
tgctggatcacaggctttggcaagaccagggagacagatgacaagacatcccccttcctc
cgggaggtgcaggtcaatctcatcgacttcaagaaatgcaatgactacttggtctatgac
agttaccttaccccaaggatgatgtgtgctggggaccttcgtgggggcagagactcctgc
cagggagacagcggggggcctcttgtctgtgagcagaacaaccgctggtacctggcaggt
gtcaccagctggggcacaggctgtggccagagaaacaaacctggtgtgtacaccaaagtg
acagaagttcttccctggatttacagcaagatggagactagcccagtgtgggcagatgcc
agcggcccaggtggcgccattgctgtcctgggatggatcgtgggttttggtggatgcagc
ttcccagggcctggaccgtcttcggtgaaaagctgctcccgttggctttatgagcatcaa
gtcctcacccagaccccctgctggtgccgtggatgtcaccagtcggactgtgctgtggct
aaccaggctgacaactga