GENSCAN 1.0	Date run:  7-Nov-116	Time: 04:03:37

Sequence gi568815593r:135349457_135549939 : 200483 bp : 46.15% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Term +   1349   1463  115  2  1   46   42   161 0.809   5.34
 1.02 PlyA +   1733   1738    6                               1.05

 2.09 PlyA -   1910   1905    6                               1.05
 2.08 Term -   2775   2714   62  1  2   24   48    66 0.419  -5.83
 2.07 Intr -   3589   3490  100  1  1  109   59   103 0.817   9.18
 2.06 Intr -  11151  11041  111  0  0   29  102   156 0.909  11.68
 2.05 Intr -  20147  19950  198  2  0   48   95   202 0.995  16.45
 2.04 Intr -  20686  20580  107  2  2  113   80   189 0.887  20.53
 2.03 Intr -  39647  39466  182  1  2   75  109   262 0.592  26.51
 2.02 Intr -  55907  55847   61  0  1   71   82    44 0.021  -0.11
 2.01 Init -  65917  65785  133  1  1   78   47    61 0.257   1.30
 2.00 Prom -  66041  66002   40                              -2.46

 3.00 Prom +  66981  67020   40                              -1.66
 3.01 Init +  78436  78533   98  0  2  102   77    24 0.259   2.74
 3.02 Intr +  86255  86305   51  2  0   71   85    87 0.181   4.72
 3.03 Term +  88153  88288  136  1  1  104   49    41 0.368  -0.71
 3.04 PlyA +  91152  91157    6                               1.05

 4.09 PlyA -  92527  92522    6                               1.05
 4.08 Term -  96439  96333  107  2  2   52   41    89 0.285  -0.83
 4.07 Intr -  97074  96990   85  0  1   85  100    32 0.808   3.49
 4.06 Intr -  98773  98656  118  0  1   84   64    84 0.848   6.07
 4.05 Intr - 100493 100002  492  1  0   71   31   490 0.837  33.71
 4.04 Intr - 112178 112035  144  1  0   57   86    84 0.740   4.50
 4.03 Intr - 117028 116663  366  0  0   87   97   293 0.938  24.36
 4.02 Intr - 117372 117219  154  1  1   71   -3   142 0.857   2.53
 4.01 Init - 122895 122757  139  0  1   71   80   142 0.851  12.00
 4.00 Prom - 129586 129547   40                              -6.56

 5.04 PlyA - 131484 131479    6                               1.05
 5.03 Term - 133056 132904  153  0  0  101   41   117 0.746   6.22
 5.02 Intr - 136987 136914   74  2  2   79   -6    52 0.104  -5.97
 5.01 Init - 137564 137522   43  2  1   81  102    49 0.656   6.18
 5.00 Prom - 140183 140144   40                              -4.46

 6.05 PlyA - 140559 140554    6                              -0.45
 6.04 Term - 141317 141140  178  1  1   66   49   186 0.931   9.66
 6.03 Intr - 143016 142912  105  2  0   48   57   107 0.788   2.93
 6.02 Intr - 154915 154831   85  2  1   85   87     4 0.068  -1.12
 6.01 Init - 160660 160585   76  1  1   90   48   101 0.476   7.55
 6.00 Prom - 161957 161918   40                              -3.16

 7.04 PlyA - 165257 165252    6                               1.05
 7.03 Term - 168126 168092   35  1  2  116   48    19 0.383  -1.55
 7.02 Intr - 179403 179296  108  1  0   39  119   102 0.369   8.66
 7.01 Init - 182652 182580   73  0  1   58   36    88 0.288   1.83
 7.00 Prom - 184666 184627   40                              -5.56

 8.02 PlyA - 184692 184687    6                               1.05
 8.01 Sngl - 186234 185521  714  0  0   85   47   978 0.664  89.63
 8.00 Prom - 192100 192061   40                              -5.86

 9.03 PlyA - 192637 192632    6                               1.05
 9.02 Term - 198077 197899  179  0  2  100   47   111 0.935   6.05
 9.01 Init - 198420 198345   76  0  1   84   43    64 0.608   1.75

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  33439  33537   99  0  0   89   86    83 0.849   8.46
S.002 Term + 190930 191112  183  0  0   68   54   128 0.840   4.94


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815593r:135349457_135549939|GENSCAN_predicted_peptide_1|38_aa
XTRLGITYFTTDVEVSVCRVNDSITVDRGNVSLYNLQL

>gi568815593r:135349457_135549939|GENSCAN_predicted_CDS_1|117_bp
nncacccggctaggcattacctacttcaccaccgatgtagaagtcagtgtttgtcgggtg
aacgacagcatcactgtcgatcgaggcaatgtcagcctgtacaacttgcaactataa

>gi568815593r:135349457_135549939|GENSCAN_predicted_peptide_2|317_aa
MEYYAAIKKDEFMSFVGTWMKLETIILSKLLQGQKTKDHMFSLIDSYVEALTSNVMVIGD
GAFRRATAMSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAV
LEYLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPE
LLAKKRGSKGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASAD
STTEGTPADGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLAQW
HDRAALLLFDVEACQGK

>gi568815593r:135349457_135549939|GENSCAN_predicted_CDS_2|954_bp
atggaatactatgcagccataaaaaaggatgagttcatgtcctttgtagggacatggatg
aagctggaaaccatcattctgagcaaactattgcaaggacagaaaaccaaagaccacatg
ttctcactcatagattcatatgttgaagctctaacctccaatgtgatggtaattggagat
ggagcctttaggagggccaccgccatgtcgagccgcggtgggaagaagaagtccaccaag
acgtccaggtctgccaaagcaggagtcatctttcccgtggggcggatgctgcggtacatc
aagaaaggccaccccaagtacaggattggagtgggggcacccgtgtacatggccgccgtc
ctggaatacctgacagcggagattctggagctggctggcaatgcagcgagagacaacaag
aagggacgggtcacaccccggcacatcctgctggctgtggccaatgatgaagagctgaat
cagctgctaaaaggagtcaccatagccagtgggggtgtgttacccaacatccaccccgag
ttgctagcgaagaagcggggatccaaaggaaagttggaagccatcatcacaccaccccca
gccaaaaaggccaagtctccatcccagaagaagcctgtatctaaaaaagcaggaggcaag
aaaggggcccggaaatccaagaagaagcagggtgaagtcagtaaggcagccagcgccgac
agcacaaccgagggcacacctgccgacggcttcacagtcctctccaccaagagcctcttc
cttggccagaagctgaaccttattcacagtgaaatcagtaatttagccggctttgaggtg
gaggccataatcaatcctaccaatgctgacattgaccttaaagatgacctagctcaatgg
cacgacagggctgctctgctgctcttcgatgtagaggcttgccaggggaaatag

>gi568815593r:135349457_135549939|GENSCAN_predicted_peptide_3|94_aa
MALPQTVSTQLVVSLFGLVQVFVCSERLPELVSGLLVAPGPDLEISIALRNYETVTHTPF
AFAAPLVAIGMVPSGTEPAVTHFPVPQAPASTIR

>gi568815593r:135349457_135549939|GENSCAN_predicted_CDS_3|285_bp
atggctctgccacaaacagtttccacccaactggtggtcagcctttttggactagtccag
gtttttgtgtgctctgagaggctgccagaacttgtaagtgggctgctggtggcaccaggg
cctgacctggagattagcatcgccctgaggaattatgagacagtaacgcacactcctttt
gcatttgcggctcctcttgtggccatcggtatggttccttcagggactgagcctgctgtg
actcacttcccagtcccccaggccccagcaagcaccatcagatag

>gi568815593r:135349457_135549939|GENSCAN_predicted_peptide_4|534_aa
MTACKIETTDLVELGPGVLEALIGKKARAGKETVKPMTGQFLQLSPEPRGATGKNKSPGN
DPAAAIATAGAAATAGPGSPCSLQNALIYSHSFLEHHLKAEHPAHRTDPGTQQVLHKRLL
NAGLEQCRNSSYSEIAGASRGVPHRRRRRIQGVEGAGERVQSAIYRQFVGLAGKALALRR
DGAPQTALFATLLRIHSLSNRSAITSQSPVNFAAYLRRERSPLGQREEENAFYIMVVAMW
KRHISLNIRFRMKTHVCKAYVKHVMHERTSSMEKPLTVLRVSLYHPTLGPSAFANVPPRL
QHDTSPLLLGRGQDAHLQLQLPRLSRRHLSLEPYLEKGSALLAFCLKALSRKGCVWVNGL
TLRYLEQVPLSTVNRVSFSGIQMLVRVEEGTSLEAFVCYFHVSPSPLIYRPEAEETDEWE
GISQGQPPPGSGCQQFLFSAQKDDRFAPRASYKEVQLHSQALSIFSIRKTELEPSGWLQG
LVFALDITIPHLLRQPEQAGILTLAFLCFSKNVNLAKLSVRDTGSPRGRLANAP

>gi568815593r:135349457_135549939|GENSCAN_predicted_CDS_4|1605_bp
atgacggcctgcaagattgaaacgactgaccttgttgaattgggacctggcgttttggag
gctctgataggcaagaaggccagagcaggcaaggaaactgtgaagccaatgactggccag
tttctacagctctcgccagagcctagaggtgcaaccggaaagaacaagtcccctggaaac
gaccccgctgctgccatcgccactgctggtgctgctgctacggcaggccctggctctcca
tgcagtctccagaatgccctcatctactcccattcatttcttgagcaccacctgaaggct
gaacacccagcacacaggacagaccctggtactcagcaggtgctgcataagcgtctgtta
aatgcaggactggagcagtgcagaaacagctcttactctgaaatcgcaggcgcttcccgg
ggagtcccgcaccggcgcagacggcggatccagggcgtggagggggccggggaacgggtt
cagagtgccatctaccggcagttcgtcggactggcaggaaaggccttggccctgcggcgg
gatggagccccccagactgcgctgtttgctacgctgctccggatccattcactctccaac
cgctctgcaatcacttcgcaatcaccagtaaactttgccgcctacttgagaagagaaaga
tcccccctggggcagagggaggaggaaaatgctttttatattatggtagtggccatgtgg
aaaagacatatttccctcaacattcgattccgaatgaaaacgcacgtttgtaaagcatat
gtgaaacatgtcatgcacgaaaggacttcttccatggagaagcccctcaccgtcctgcga
gtgagcctgtaccatcccacgctgggcccatctgcctttgccaatgtcccaccacggctg
cagcatgataccagccctctgcttctcggacgggggcaggacgcccacctccagctgcag
ctccctcgcctctcccgccgtcacctgtccctggagccctacctggagaaaggcagtgcc
ctgctggccttctgcctcaaggccctgagccgcaagggctgtgtgtgggtcaatgggctg
acgctgaggtacctggagcaggtccccctgagcaccgtcaacagggtctccttctcaggc
atccagatgctggttcgcgtagaagaaggcacatccctggaggcttttgtctgctatttc
catgtcagcccttcacccctgatttacagacctgaggctgaggaaactgacgaatgggaa
ggcatctcccaggggcagcctccccctggttcaggctgtcaacaatttctgttttctgcc
caaaaggatgatcgttttgcacccagggcaagctacaaggaggtccaacttcactcacag
gccctgagcatcttctccatcaggaaaacagagctggaaccgtcaggctggcttcagggc
ctggtcttcgcacttgatatcactatccctcacctgctcagacagccagagcaggcgggt
attttaaccctcgcattcctctgcttttccaagaatgtgaatcttgccaagctgtccgtg
agagacacgggctcccctcgagggagacttgcaaatgctccataa

>gi568815593r:135349457_135549939|GENSCAN_predicted_peptide_5|89_aa
MGVPSAPPPFFTDEDQLPSFDPPRWDSSTVLEEPVALTQLSRDDDSDDSNSHIDLGSLPL
HPALPLKISVSDQTTSSHPEELITIAGPK

>gi568815593r:135349457_135549939|GENSCAN_predicted_CDS_5|270_bp
atgggtgttccttcagcccctccacccttcttcacggatgaagaccagctgccttccttt
gacccaccaagatgggactcctccacagtcctggaagagcctgtggccttgacccaactg
agcagagatgatgacagtgatgatagtaacagccacattgacctaggcagtcttcccctc
cacccggccttgcctctgaagatctcagtatctgatcagacaaccagttctcaccctgaa
gagctgatcacaattgcaggccccaagtga

>gi568815593r:135349457_135549939|GENSCAN_predicted_peptide_6|147_aa
MTVDTAEFFPSDPISPSNKDDHTAEGYSFFHPPSTGLLQLLLWKCPDSLSTSQLSSSPNQ
QQVLPEHYFMLQPYPQEPSFINHTTMPDGPPIASRAPAACGDGKGPGPELEVEAAWPQLA
KTAPTLASFTGASSSLSLESRGPDIVF

>gi568815593r:135349457_135549939|GENSCAN_predicted_CDS_6|444_bp
atgacggtggacacagctgagttcttcccatcagatcctatcagccccagtaacaaggat
gaccatactgcagaagggtatagctttttccacccaccctcaacagggcttctccagctg
ctgctctggaagtgtcctgacagcctcagcacatcacagctgtccagtagccctaaccag
caacaagtgttgcctgaacactacttcatgctccagccctacccgcaggagcccagtttc
atcaaccacacaaccatgccagatgggccgcccatcgcgtccagagcacctgctgcgtgc
ggcgacgggaaaggccccggccctgaactggaggtggaggcggcttggccacagctggct
aagaccgcgcctacgctggcatcttttactggagcttcttcctcgctcagcctggagtct
agaggtcccgacatcgtcttctga

>gi568815593r:135349457_135549939|GENSCAN_predicted_peptide_7|71_aa
MYDPEHLSRTQSTFPKRNVFNNIVENMYAVAPTSAKQGIKAAKFNTKETNGEDFSTEDAP
GPSSKYSHIRS

>gi568815593r:135349457_135549939|GENSCAN_predicted_CDS_7|216_bp
atgtatgacccagagcacctttccaggacccagagcacctttccaaaaagaaacgtcttt
aacaacatcgttgaaaatatgtatgcagttgctccaacctcagccaagcagggaatcaag
gctgcaaagttcaacaccaaagagaccaatggtgaagattttagcacagaagatgctcct
ggcccgagctccaaatacagccacattaggagttag

>gi568815593r:135349457_135549939|GENSCAN_predicted_peptide_8|237_aa
MPARLETCISDLDCASSSGSDLSGFLTDEEDCARLQQAASASGPPAPARRGAPNISRASE
VPGAQDDEQERRRRRGRTRVRSEALLHSLRRSRRVKANDRERNRMHNLNAALDALRSVLP
SFPDDTKLTKIETLRFAYNYIWALAETLRLADQGLPGGGARERLLPPQCVPCLPGPPSPA
SDAESWGSGAAAASPLSDPSSPAASEDFTYRPGDPVFSFPSLPKDLLHTTPCFIPYH

>gi568815593r:135349457_135549939|GENSCAN_predicted_CDS_8|714_bp
atgccagcccgccttgagacctgcatctccgacctcgactgcgccagcagcagcggcagt
gacctatccggcttcctcaccgacgaggaagactgtgccagactccaacaggcagcctcc
gcttcggggccgcccgcgccggcccgcaggggcgcgcccaatatctcccgggcgtctgag
gttccaggggcacaggacgacgagcaggagaggcggcggcgccgcggccggacgcgggtc
cgctccgaggcgctgctgcactcgctgcgcaggagccggcgcgtcaaggccaacgatcgc
gagcgcaaccgcatgcacaacttgaacgcggccctggacgcactgcgcagcgtgctgccc
tcgttccccgacgacaccaagctcaccaaaatcgagacgctgcgcttcgcctacaactac
atctgggctctggccgagacactgcgcctggcggatcaagggctgcccggaggcggtgcc
cgggagcgcctcctgccgccgcagtgcgtcccctgcctgcccggtcccccaagccccgcc
agcgacgcggagtcctggggctcaggtgccgccgccgcctccccgctctctgaccccagt
agcccagccgcctccgaagacttcacctaccgccccggcgaccctgttttctccttccca
agcctgcccaaagacttgctccacacaacgccctgtttcattccttaccactag

>gi568815593r:135349457_135549939|GENSCAN_predicted_peptide_9|84_aa
MGVIRSSKGVARVSICPCLTPTSSRGEEELCMCTHVSMHVSTHAGMNTWCPCTNPFPPQI
SLERQLYSKDMNDDGDDDEVKKRD

>gi568815593r:135349457_135549939|GENSCAN_predicted_CDS_9|255_bp
atgggagtgatccgcagcagcaaaggcgtggccagggtttctatctgcccttgcctgacg
cccaccagcagcaggggtgaggaagagctatgtatgtgcacgcatgtatccatgcatgtc
agcacccatgcaggcatgaacacctggtgcccatgcacaaatccattccctccacaaata
tcccttgagcgtcaactatactcaaaggatatgaatgatgatggtgatgatgatgaagtc
aagaagagggactga