GENSCAN 1.0	Date run:  4-Nov-116	Time: 20:34:33

Sequence gi568815589f:130593792_130803771 : 209980 bp : 47.41% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   1692   1797  106  2  1   79  107    81 0.867   8.89
 1.02 Intr +  15703  15858  156  2  0   54   75    55 0.524   0.78
 1.03 Intr +  16163  16196   34  0  1   93  121     7 0.878   1.78
 1.04 Intr +  22564  22726  163  1  1   78   89   221 0.977  21.18
 1.05 Intr +  24006  24104   99  2  0  103   91    98 0.975  11.91
 1.06 Intr +  26563  26667  105  0  0   79   69    72 0.885   4.81
 1.07 Intr +  28917  29019  103  2  1   83   94    56 0.915   5.45
 1.08 Intr +  29820  29920  101  1  2   76   94    75 0.711   6.73
 1.09 Intr +  32573  32714  142  1  1   61  116   164 0.998  16.43
 1.10 Intr +  33749  33859  111  0  0   76  105     4 0.648   1.25
 1.11 Intr +  36837  36997  161  1  2  113   50   189 0.712  17.31
 1.12 Intr +  37766  37839   74  1  2   81   87    11 0.353  -1.50
 1.13 Intr +  38151  38231   81  0  0   73   92    24 0.196   0.05
 1.14 Intr +  38411  38487   77  2  2   73  108    44 0.442   4.06
 1.15 Intr +  40876  40947   72  2  0  110   70    70 0.855   6.78
 1.16 Intr +  41618  41722  105  0  0   -3   59   157 0.728   3.89
 1.17 Intr +  42208  42335  128  2  2  118   62    73 0.948   8.10
 1.18 Intr +  58046  58247  202  1  1   -8   87   249 0.831  14.06
 1.19 Term +  58333  58592  260  2  2   23   42   404 0.999  25.01
 1.20 PlyA +  58659  58664    6                               1.05

 2.00 Prom +  60301  60340   40                              -3.66
 2.01 Init +  61036  61105   70  0  1   62   82     9 0.657  -1.04
 2.02 Intr +  68052  68270  219  1  0   37   55   164 0.839   6.27
 2.03 Intr +  68611  68753  143  2  2   69   69   123 0.904   8.57
 2.04 Intr +  70770  71085  316  2  1  124  101   432 0.509  43.74
 2.05 Intr +  72817  73007  191  2  2   83   85   344 0.941  32.90
 2.06 Intr +  74367  74522  156  2  0   82   85   392 0.978  38.51
 2.07 Intr +  84738  84849  112  2  1  162   78   114 0.993  17.75
 2.08 Term +  87457  87878  422  2  2   53   53   875 0.971  75.95
 2.09 PlyA +  88979  88984    6                               1.05

 3.00 Prom +  97672  97711   40                              -4.56
 3.01 Init +  97824  97910   87  2  0   59   98    50 0.864   2.15
 3.02 Term +  98685  98924  240  2  0   63   42   197 0.962   8.63
 3.03 PlyA +  98955  98960    6                              -3.44

 4.00 Prom +  99162  99201   40                              -3.46
 4.01 Init + 100001 100122  122  1  2  115   88    99 0.912  12.27
 4.02 Intr + 101701 101802  102  1  0   47   94   104 0.829   6.19
 4.03 Intr + 103791 103836   46  0  1  114   82    60 0.997   6.41
 4.04 Intr + 104371 104460   90  0  0   11   95    76 0.626   0.79
 4.05 Intr + 108343 108519  177  0  0   48   83   103 0.513   5.92
 4.06 Intr + 109262 109390  129  1  0   96   78   145 0.999  15.19
 4.07 Term + 109903 109983   81  0  0  104   49    85 0.997   3.89
 4.08 PlyA + 110439 110444    6                               1.05

 5.04 PlyA - 113149 113144    6                               1.05
 5.03 Term - 117752 117713   40  1  1  133   42    -8 0.332  -4.24
 5.02 Intr - 119412 119057  356  0  2   69  113   173 0.113  11.99
 5.01 Init - 126129 126004  126  0  0   63   -8   135 0.102   1.56
 5.00 Prom - 127137 127098   40                              -4.06

 6.02 PlyA - 127271 127266    6                               1.05
 6.01 Sngl - 131259 131047  213  0  0   63   43   180 0.167   6.18
 6.00 Prom - 131993 131954   40                              -3.26

 7.00 Prom + 133348 133387   40                              -5.16
 7.01 Init + 146459 146533   75  1  0   80   94    -6 0.401   0.29
 7.02 Intr + 157780 157882  103  0  1   35   80    94 0.462   3.05
 7.03 Term + 161982 162163  182  1  2   71   37   149 0.450   5.87
 7.04 PlyA + 164075 164080    6                               1.05

 8.06 PlyA - 164951 164946    6                               1.05
 8.05 Term - 165663 165447  217  2  1   22   42   240 0.217   9.42
 8.04 Intr - 172574 172403  172  0  1  114   76    59 0.094   6.30
 8.03 Intr - 184959 184926   34  0  1   86   81    34 0.027   0.30
 8.02 Intr - 186772 186652  121  0  1  -79   94   156 0.088  -0.00
 8.01 Init - 205445 205384   62  2  2   76   88    23 0.122   1.84

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815589f:130593792_130803771|GENSCAN_predicted_peptide_1|759_aa
IAAKIDSIPHLNNSTPLVDPSVYGYGVQKRPLDDGGGAYVRVPHDYSCCGAVLNNASKEG
KSSHLFLKEKEGSLSIFTLSLDPEQEGVGNQLGALVHQRQAKRLLGQIVDRCRNGPGFHN
DIDSNSTIQEILIPASKVGLVIGRGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITG
DAFKVQQAREMVLEIIREKDQADFRGVRGDFNSRMGGGSIEVSVPRFAVGIVIGRNGEMI
KKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHIISELILTAQERDGFGGLAAA
RGRGRGRGDWSVGAPGGVQEITYTVPADKCGLVIGKDTVGLCSCKMQETVLSFRLNHSEL
VWVRVHLPAGVRAGGENIKSINQQSGAHVELQRNPPPNSDPNLRRFTIRGVPQQIEVARQ
LIDEKVGGTNLGAPGAFGQSPFSQPPAPPHQNTFPPRSSGCFPNMAAKVNGNPHSTPVSG
PPAFLTQGWGSTYQAWQQPTQQVPSQQSQPQSSQPNYSKAWEDYYKKQRCFLLVGRDRVE
GYQRSGPPGVGIIARFMALLGVGGHAASAAPQASSPPDYTMAWAEYYRQQVAFYGQTLGQ
AQAHSQCPPLWREEGLVGPDETNEIPNANFRQQIRKLIKDGLILRHRKPVTVHSRAQCWK
STLARRKGRHLGIESKKIDRHMYHSLYLKLKGNVFKHKRILTEHSHKLKADKARKKPLAD
QAEARGSKTKEARKLREEHLQTKKEEIIKTLSQEEKAKK

>gi568815589f:130593792_130803771|GENSCAN_predicted_CDS_1|2280_bp
attgctgctaaaattgattcaattcctcacttgaataattccacacctctagtggacccc
tcagtatatggatacggagtacaaaaacggcccttggatgatggaggaggagcatatgtg
cgtgttcctcatgactacagctgctgtggagcagtccttaacaatgcatccaaggagggt
aaatcttctcatttgtttttaaaagagaaagaaggatctctttccatctttacattgagt
ttggatccagagcaggagggagtaggtaaccagttaggggccttggtacatcaaagacaa
gccaaacggctcctgggacagattgtggaccgctgtcgaaatggacctggctttcataat
gacatagacagcaacagcacaatccaggagattctcattcccgcatctaaagtgggtctg
gtcatcggcagaggaggggaaacaatcaagcagttgcaggagcggacaggggtgaagatg
gtcatgatccaggatggcccattgcccacgggagcagacaagcctcttcgtatcactgga
gatgcatttaaagtacagcaagcaagagaaatggtactagagattatccgagaaaaagac
caagctgactttcggggtgtacgcggcgatttcaactctcgaatgggaggaggcagtata
gaggtatctgtgcctaggtttgctgtggggattgtaataggaagaaacggggaaatgatc
aaaaagatccagaatgatgctggtgtgaggattcagtttaaaccagatgatgggattagt
ccagaaagagctgcccaggtcatgggccctccggatcggtgtcagcatgcagcgcatatc
atcagcgagctgattcttacagcccaggaaagagacggctttggaggcctggcagcagcc
agaggaagaggtcgtggccgtggcgactggagcgtgggagcccctggtggcgtccaggag
ataacatacacggtgccagccgataagtgtggcctcgtcataggcaaagacactgtgggc
ttatgctcttgcaaaatgcaagaaaccgtgttgtcttttagactgaaccactcagagttg
gtatgggttcgtgttcatttgccggcaggtgtgcgggctgggggtgagaacatcaaaagc
atcaaccagcagtcaggggcgcacgtggagcttcagaggaacccccctcccaacagcgac
cccaacctgcggagattcaccatcaggggggttccccagcagatcgaggtggccaggcag
ctcatagatgagaaagttggcgggaccaatctcggagcacctggagccttcggacagagt
ccattcagccagccacctgccccacctcatcaaaatacctttcctccaaggagctccggg
tgcttcccaaacatggctgccaaggtgaatgggaacccccacagcacccctgtgagtggt
cctccggcctttctgacccagggctggggcagcacctaccaggcgtggcagcagcccaca
cagcaggtcccaagccagcagagccagccgcagagcagccagcccaactacagcaaggcc
tgggaagactattacaaaaaacagagatgtttcttgctggttggaagagatcgggttgaa
ggctaccagagaagtggtccccctggtgttggcatcatcgccaggttcatggcccttcta
ggggttggaggtcacgccgccagcgctgctcctcaggccagctccccaccggactacaca
atggcctgggcagaatattacagacagcaggtcgctttctacggacagacgttagggcag
gcgcaggcccacagccagtgtcctccactgtggcgagaagaaggtctggttggacccgat
gagaccaatgaaatccccaatgccaacttccgtcagcagatccggaagctgatcaaagat
gggctgatcttgcgtcaccgcaagcctgtgacggtccattcccgggctcaatgctggaaa
agcaccttggcccgccggaagggcaggcacttgggcatagaatcgaagaagattgatcgc
cacatgtatcacagcctgtacctgaagttgaaggggaatgtgttcaaacacaagcggatt
ctcacggaacacagccacaagctgaaggcagacaaagcccgcaagaagcccctggctgac
caggctgaggcccgcgggtctaagaccaaggaagcacgcaagctccgtgaagagcacctc
cagaccaagaaggaagagatcatcaagactttgtcccaggaggaaaaggccaagaaataa

>gi568815589f:130593792_130803771|GENSCAN_predicted_peptide_2|542_aa
MVWALSTGNNTSWPEPSWFFFGLVLLSGLAGPEERNGTPWPQSEPVVTAPAESKPLTLSR
GSGPKRCTPARRMHRPEGFPQWDVALERAKSSGLSWDSSSGQGADATHKLRRKMSGGFGD
PNPPPSSAALPSAGALPNGPAFCQRSPLAPWAPLSPAHLPRRPGRPPAPGSSGPPMMGSV
LPAEALVLKTGLKAPGLALAEVITSDILHSFLYGRWRNVLGEQLFEDKSHHASPKTAFTA
EVLAQSFSGEVQKLSSLVLPAEVIIAQSSIPGEGLGIFSKTWIKAGTEMGPFTGRVIAPE
HVDICKNNNLMWEVFNEDGTVRYFIDASQEDHRSWMTYIKCARNEQEQNLEVVQIGTSIF
YKAIEMIPPDQELLVWYGNSHNTFLGIPGVPGLEEDQKKNKHEDFHPADSAAGPAGRMRC
VICHRGFNSRSNLRSHMRIHTLDKPFVCRFCNRRFSQSSTLRNHVRLHTGERPYKCQVCQ
SAYSQLAGLRAHQKSARHRPPSTALQAHSPALPAPHAHAPALAAAAAAAAAAAAHHLPAM
VL

>gi568815589f:130593792_130803771|GENSCAN_predicted_CDS_2|1629_bp
atggtgtgggcactgtccacaggaaacaacacctcatggccagaacccagctggttcttc
tttggcctcgtactgctctccgggcttgcgggtccggaggagaggaatgggactccctgg
ccgcagtccgagcccgtggtcactgcgccagcggaatccaagcctctaactctaagccgg
ggttcaggacccaaacgctgcaccccagcacggaggatgcacagacctgagggcttcccg
cagtgggacgtggccctggagagggcaaaatcctcggggttgtcgtgggactcgagctct
ggccagggagccgatgcgacccacaagctgcgtcgaaaaatgagtggagggttcggcgac
cctaacccacctccctcctcagcagcgctgccctctgctggcgccctgcccaacggtcct
gccttctgccagcgctctcctctcgccccttgggctcccctctcgcccgcccacctcccc
cgtcggcccggccgtcccccggcgccggggagctccgggccgcccatgatgggctccgtg
ctcccggctgaggccctggtgctcaagaccgggctgaaggcgccgggactggcgctggcc
gaggttatcacctccgacatcctgcacagcttcctgtacggccgctggcgcaacgtgctc
ggggagcagctcttcgaggacaagagccaccacgccagccccaagacagccttcaccgcc
gaggtgctggcgcagtccttctccggcgaagtgcagaagctgtccagcctggtgctgcct
gcggaggtgatcatcgctcagagctccatccctggcgagggcctcggcatcttctccaag
acgtggatcaaggcgggaaccgagatgggccccttcaccggccgcgtgatcgccccggag
cacgtggacatctgcaagaacaacaacctcatgtgggaggtgttcaatgaggatggcacg
gtgcgctacttcatcgatgccagccaggaggaccaccggagctggatgacctacatcaag
tgtgcacgtaacgaacaggagcagaacctggaggtggtccagatcggcaccagcatcttc
tacaaggccattgagatgatcccacctgaccaggaactgctggtgtggtacggaaactca
cacaacaccttcctggggatcccaggtgtgcccgggctagaggaggaccagaaaaagaac
aagcatgaggacttccacccggcggactcggcggctggccccgcgggccgcatgcgatgc
gtcatctgccaccgcggcttcaactcgcgcagcaacctgcgctcgcacatgcgcatccac
acgctggacaagcccttcgtgtgccgcttctgcaaccgccgcttcagccagtcgtccacg
ctgcgcaaccacgtgcgcctgcacacgggcgagcgcccctacaagtgccaggtgtgccag
agcgcctactcgcagctggccggcctgcgcgcccaccagaagagcgcgcggcaccggccg
cccagcaccgcgctgcaggcacactcgcccgcgctgcccgccccgcacgcgcacgcgccc
gcgctcgccgccgccgccgccgccgccgccgccgccgccgcgcaccacctgccggccatg
gtgctgtga

>gi568815589f:130593792_130803771|GENSCAN_predicted_peptide_3|108_aa
MPKESILFTSPLGCAASSPGTHLSTGRKGGRSLGLAPRLPGYASSEDTIALLWPRQDWTE
GLGSSAFLQARQRARVWQPAYPGPRGTSIHVIDCLAGLAFLSVVVRLA

>gi568815589f:130593792_130803771|GENSCAN_predicted_CDS_3|327_bp
atgcctaaggaatctatactttttacaagccccctgggatgtgctgcttcgtctccgggt
acccacttgtctactggtcgtaaagggggccgctcgctgggcctggctccccggctgccg
ggctacgcgagctcagaggacaccatcgccctcttatggccgcggcaggactggaccgag
gggctgggctctagtgccttcctccaggcacggcagagggcgagggtctggcagcccgct
tacccagggcctcggggcactagcattcatgtcatcgactgcctggcagggctggctttc
ttaagtgtggtcgtgagacttgcttaa

>gi568815589f:130593792_130803771|GENSCAN_predicted_peptide_4|248_aa
MAMEMRLPVARKPLSERLGRDTKKHLVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSV
ERVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGEL
LGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWIYPTPEHKEEEAGGFIANLEP
VSLADREVISRLRNCIISLVTQRMMLYDTSILYCYEASLPHQIKDILKPEIMEEIVMETR
QRLLEQEG

>gi568815589f:130593792_130803771|GENSCAN_predicted_CDS_4|747_bp
atggcgatggagatgaggcttccagtggctcgcaagcctcttagcgagagactgggccgc
gacactaagaaacatctagtggtgccgggggatacaatcactacggacacaggattcatg
cggggccatggaacgtatatgggagaagagaagctcattgcatctgttgctggctctgtg
gagagagtaaacaagttgatctgtgtgaaagctttgaaaaccagatacattggtgaagta
ggagacatcgtagtgggacgaatcacagaggttcaacagaagaggtggaaggtggagacc
aactccaggctggattcggtcttgctgctctcgtccatgaaccttcctggaggagagctg
ctaggtcagggggttttggtccaggtttccccctccctggtgaaacggcagaagacccac
tttcatgatttgccatgtggtgcctcagtgattctcggtaacaacggcttcatctggatt
tacccaacacctgagcacaaagaagaggaagcagggggcttcattgcaaacctggagcct
gtctctcttgctgatcgagaggtgatatcccggcttcggaactgcatcatctcgctggta
actcagaggatgatgctgtatgataccagcatcctgtactgctatgaagcatcccttcca
catcagatcaaagacatcttaaagccagaaataatggaggagattgtgatggaaacacgc
cagaggcttttggaacaggagggataa

>gi568815589f:130593792_130803771|GENSCAN_predicted_peptide_5|173_aa
MTSPLTLNDSGKKLPSAHSFRFTINNNTNAILGFQIHVCSNTAVTSPELRRGTQPPPAGR
GRGQRRGSSAAGPGNRLRLQRCSGTDTKPRGRHDGLRAAPQRGQAPPSAPPTATSGARLE
GTRMPQEPLSRDTAAPPGSGPTACESPARHDLLNVASLSARWSFALVAQAAMQ

>gi568815589f:130593792_130803771|GENSCAN_predicted_CDS_5|522_bp
atgactagccctttgaccctgaatgattctggcaaaaagttgccatctgcccactctttc
agattcaccatcaacaacaacaccaacgctattcttggcttccagatccatgtctgctcc
aacaccgcagtcacatctcccgagctccgccgagggacccagccgccccccgccggtagg
ggccgtggacagcggaggggctcctcagccgcaggacccgggaaccggctccggctccag
cgctgctcaggcacagacaccaaaccccgcggccgccatgatggattacgagccgctcca
caacgaggccaggccccgccctcggccccgcccacggcgacgtccggagcccgcctcgag
gggacccggatgccccaagagccgctttcccgggacaccgccgcccctcccggctctggt
cccactgcctgcgaaagcccggcccggcacgaccttttaaatgtggcttctctgagcgca
agatggagttttgctcttgtcgcccaggctgcgatgcagtaa

>gi568815589f:130593792_130803771|GENSCAN_predicted_peptide_6|70_aa
MTKGTLSFEKRCNMMHTLCGHCGSKACHLPKSTCGKCGYPAKRKRKYDWCAKAKRLKATG
TGRMKRRGFP

>gi568815589f:130593792_130803771|GENSCAN_predicted_CDS_6|213_bp
atgacaaagggaacgttatcgtttgaaaagcgttgcaatatgatgcacacgttgtgcggc
cactgtggctctaaggcctgtcaccttccgaagtctacctgtggcaaatgtggctacccc
gccaagcgcaagaggaagtatgactggtgtgccaaggctaaaagactaaaggccacaggg
actgggcgaatgaagcggcgtggatttccataa

>gi568815589f:130593792_130803771|GENSCAN_predicted_peptide_7|119_aa
MNHRDGSEGQSTDGPSSGLEVPWMLTWATEEAAASSGIGKVSAVESATIKALLLLAPEPG
VGGILAVCRSSWPPEIRAVTFHLQMAVLAARLVAEEDEDTAQGLSFKGFRVQQQHSVIS

>gi568815589f:130593792_130803771|GENSCAN_predicted_CDS_7|360_bp
atgaaccacagggatggctcagaaggtcagagcactgatggaccctcaagtgggttggaa
gtcccttggatgctaacctgggccactgaggaagctgcagcctcttcaggaattgggaag
gtgtcagctgtagaatctgccacaatcaaagccttactgctcctggctccagagccaggg
gttggtggaatcctggcagtctgccgctcttcctggcctccagagatcagggctgtgact
ttccatctgcagatggcagttctagctgcgaggttggtggccgaggaggacgaggacaca
gctcagggcctgtccttcaagggcttccgtgtgcagcagcagcactctgtaatatcatag

>gi568815589f:130593792_130803771|GENSCAN_predicted_peptide_8|201_aa
MEHLRWVQTPPRGQTLLQILANSRYEYRYEVSTIQKRKLQEFSSGDWSDPDSSKISPNIT
KPRSKKGINHDNGPYAEVCLRSWISSWAYSKASVLTVRHLSCPARPAFQAPVIRMPLSRL
AGALGAEASWSKWIVKHWRQLATSTTHLAKELLMKRTVQWWFKKFYKGDESLEDEECNDR
PSEVDNDQLGDQSQKLILLQP

>gi568815589f:130593792_130803771|GENSCAN_predicted_CDS_8|606_bp
atggagcatctccgatgggtgcaaacacctccaagaggccaaacgctgctccaaatactg
gcaaatagcaggtacgagtacagatacgaggtgagcactatccaaaaacgaaagttgcaa
gagttttcatctggagactggtcagatccagacagctccaagatcagccccaatatcaca
aagccaaggagtaaaaaaggtataaaccacgacaatgggccctacgcagaagtctgtctg
cggtcatggatctcttcctgggcctacagtaaggcatctgtcctgacagtaaggcatctg
tcctgcccagcaagacccgccttccaggctccagtcatccgcatgcccctgagcaggctg
gcgggggcactgggggccgaggcttcttggtcaaaatggattgtaaagcactggagacaa
ctcgcaacatcaacaacgcatttggccaaggagctgctaatgaaacgtacagtgcagtgg
tggttcaagaagttttacaaaggagacgagagccttgaagatgaggagtgcaatgaccgg
ccatcagaagttgacaacgaccagttgggagatcaatcacagaagctgatcctcttacaa
ccataa