Result of FASTA (omim) for pF1KB8679
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8679, 514 aa
  1>>>pF1KB8679 514 - 514 aa - 514 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5416+/-0.000388; mu= 13.4966+/- 0.024
 mean_var=114.4480+/-22.553, 0's: 0 Z-trim(115.0): 55  B-trim: 611 in 1/55
 Lambda= 0.119886
 statistics sampled from 25126 (25178) to 25126 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.648), E-opt: 0.2 (0.295), width:  16
 Scan time:  8.850

The best scores are:                                      opt bits E(85289)
NP_001354 (OMIM: 300126,305000) H/ACA ribonucleopr ( 514) 3338 588.5 1.5e-167
NP_001135935 (OMIM: 300126,305000) H/ACA ribonucle ( 509) 3280 578.5 1.6e-164
NP_001275676 (OMIM: 300126,305000) H/ACA ribonucle ( 420) 2764 489.2  1e-137


>>NP_001354 (OMIM: 300126,305000) H/ACA ribonucleoprotei  (514 aa)
 initn: 3338 init1: 3338 opt: 3338  Z-score: 3128.9  bits: 588.5 E(85289): 1.5e-167
Smith-Waterman score: 3338; 100.0% identity (100.0% similar) in 514 aa overlap (1-514:1-514)

               10        20        30        40        50        60
pF1KB8 MADAEVIILPKKHKKKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MADAEVIILPKKHKKKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGAL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 FQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 GQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 MKDSAVNAICYGAKIMLPGVLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKDSAVNAICYGAKIMLPGVLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 GIVAKIKRVIMERDTYPRKWGLGPKASQKKLMIKQGLLDKHGKPTDSTPATWKQEYVDYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GIVAKIKRVIMERDTYPRKWGLGPKASQKKLMIKQGLLDKHGKPTDSTPATWKQEYVDYS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 ESAKKEVVAEVVKAPQVVAEAAKTAKRKRESESESDETPPAAPQLIKKEKKKSKKDKKAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESAKKEVVAEVVKAPQVVAEAAKTAKRKRESESESDETPPAAPQLIKKEKKKSKKDKKAK
              430       440       450       460       470       480

              490       500       510    
pF1KB8 AGLESGAEPGDGDSDTTKKKKKKKKAKEVELVSE
       ::::::::::::::::::::::::::::::::::
NP_001 AGLESGAEPGDGDSDTTKKKKKKKKAKEVELVSE
              490       500       510    

>>NP_001135935 (OMIM: 300126,305000) H/ACA ribonucleopro  (509 aa)
 initn: 3076 init1: 2741 opt: 3280  Z-score: 3074.8  bits: 578.5 E(85289): 1.6e-164
Smith-Waterman score: 3280; 98.8% identity (99.0% similar) in 514 aa overlap (1-514:1-509)

               10        20        30        40        50        60
pF1KB8 MADAEVIILPKKHKKKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MADAEVIILPKKHKKKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGAL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 FQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 GQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 MKDSAVNAICYGAKIMLPGVLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKDSAVNAICYGAKIMLPGVLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 GIVAKIKRVIMERDTYPRKWGLGPKASQKKLMIKQGLLDKHGKPTDSTPATWKQEYVDYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::.     
NP_001 GIVAKIKRVIMERDTYPRKWGLGPKASQKKLMIKQGLLDKHGKPTDSTPATWKQD-----
              370       380       390       400       410          

              430       440       450       460       470       480
pF1KB8 ESAKKEVVAEVVKAPQVVAEAAKTAKRKRESESESDETPPAAPQLIKKEKKKSKKDKKAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESAKKEVVAEVVKAPQVVAEAAKTAKRKRESESESDETPPAAPQLIKKEKKKSKKDKKAK
         420       430       440       450       460       470     

              490       500       510    
pF1KB8 AGLESGAEPGDGDSDTTKKKKKKKKAKEVELVSE
       ::::::::::::::::::::::::::::::::::
NP_001 AGLESGAEPGDGDSDTTKKKKKKKKAKEVELVSE
         480       490       500         

>>NP_001275676 (OMIM: 300126,305000) H/ACA ribonucleopro  (420 aa)
 initn: 2764 init1: 2764 opt: 2764  Z-score: 2593.6  bits: 489.2 E(85289): 1e-137
Smith-Waterman score: 2764; 100.0% identity (100.0% similar) in 419 aa overlap (1-419:1-419)

               10        20        30        40        50        60
pF1KB8 MADAEVIILPKKHKKKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MADAEVIILPKKHKKKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGAL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 FQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 GQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 MKDSAVNAICYGAKIMLPGVLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKDSAVNAICYGAKIMLPGVLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 GIVAKIKRVIMERDTYPRKWGLGPKASQKKLMIKQGLLDKHGKPTDSTPATWKQEYVDYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
NP_001 GIVAKIKRVIMERDTYPRKWGLGPKASQKKLMIKQGLLDKHGKPTDSTPATWKQEYVDYR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 ESAKKEVVAEVVKAPQVVAEAAKTAKRKRESESESDETPPAAPQLIKKEKKKSKKDKKAK




514 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:54:12 2016 done: Sat Nov  5 21:54:13 2016
 Total Scan time:  8.850 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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