Result of FASTA (omim) for
pF1KB6329
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6329, 261 aa
1>>>pF1KB6329 261 - 261 aa - 261 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0233+/-0.000322; mu= 16.6106+/- 0.020
mean_var=65.5874+/-13.195, 0's: 0 Z-trim(115.7): 26 B-trim: 0 in 0/55
Lambda= 0.158367
statistics sampled from 26274 (26300) to 26274 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.688), E-opt: 0.2 (0.308), width: 16
Scan time: 5.440
The best scores are: opt bits E(85289)
NP_067021 (OMIM: 605323) carboxy-terminal domain R ( 261) 1765 411.7 6.9e-115
NP_872580 (OMIM: 605323) carboxy-terminal domain R ( 260) 1746 407.3 1.4e-113
XP_011509871 (OMIM: 605323) PREDICTED: carboxy-ter ( 394) 1639 383.0 4.5e-106
NP_001193807 (OMIM: 605323) carboxy-terminal domai ( 260) 1630 380.8 1.3e-105
XP_011509872 (OMIM: 605323) PREDICTED: carboxy-ter ( 393) 1620 378.7 9e-105
XP_016860106 (OMIM: 605323) PREDICTED: carboxy-ter ( 276) 1493 349.5 3.7e-96
XP_016860107 (OMIM: 605323) PREDICTED: carboxy-ter ( 275) 1474 345.2 7.5e-95
XP_016860104 (OMIM: 605323) PREDICTED: carboxy-ter ( 409) 1367 320.9 2.3e-87
XP_016860105 (OMIM: 605323) PREDICTED: carboxy-ter ( 408) 1348 316.5 4.7e-86
NP_005799 (OMIM: 608592) CTD small phosphatase-lik ( 265) 1203 283.3 3.2e-76
NP_001008393 (OMIM: 608592) CTD small phosphatase- ( 276) 1048 247.9 1.5e-65
XP_016861009 (OMIM: 608592) PREDICTED: CTD small p ( 282) 1048 247.9 1.5e-65
XP_016861008 (OMIM: 608592) PREDICTED: CTD small p ( 297) 1048 247.9 1.6e-65
NP_005721 (OMIM: 608711) carboxy-terminal domain R ( 271) 981 232.5 6e-61
XP_005268613 (OMIM: 608711) PREDICTED: carboxy-ter ( 277) 980 232.3 7.1e-61
NP_056158 (OMIM: 610684) CTD nuclear envelope phos ( 244) 432 107.1 3.2e-23
NP_001137247 (OMIM: 610684) CTD nuclear envelope p ( 244) 432 107.1 3.2e-23
NP_001316488 (OMIM: 607381) mitochondrial import i ( 240) 268 69.6 5.9e-12
XP_011525793 (OMIM: 607381) PREDICTED: mitochondri ( 341) 268 69.7 7.8e-12
NP_001001563 (OMIM: 607381) mitochondrial import i ( 456) 268 69.8 9.9e-12
NP_001189433 (OMIM: 604168,604927) RNA polymerase ( 842) 157 44.6 0.00069
XP_011524563 (OMIM: 604168,604927) PREDICTED: RNA ( 851) 157 44.6 0.0007
NP_430255 (OMIM: 604168,604927) RNA polymerase II ( 867) 157 44.6 0.00071
NP_001305440 (OMIM: 604168,604927) RNA polymerase ( 867) 157 44.6 0.00071
NP_004706 (OMIM: 604168,604927) RNA polymerase II ( 961) 157 44.7 0.00077
XP_016881567 (OMIM: 604168,604927) PREDICTED: RNA ( 776) 149 42.8 0.0023
>>NP_067021 (OMIM: 605323) carboxy-terminal domain RNA p (261 aa)
initn: 1765 init1: 1765 opt: 1765 Z-score: 2183.5 bits: 411.7 E(85289): 6.9e-115
Smith-Waterman score: 1765; 100.0% identity (100.0% similar) in 261 aa overlap (1-261:1-261)
10 20 30 40 50 60
pF1KB6 MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSGA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PLLVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 PLLVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 DGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 DGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRES
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 CVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 CVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPF
190 200 210 220 230 240
250 260
pF1KB6 FEQLSRVDDVYSVLRQPRPGS
:::::::::::::::::::::
NP_067 FEQLSRVDDVYSVLRQPRPGS
250 260
>>NP_872580 (OMIM: 605323) carboxy-terminal domain RNA p (260 aa)
initn: 1275 init1: 1275 opt: 1746 Z-score: 2160.1 bits: 407.3 E(85289): 1.4e-113
Smith-Waterman score: 1746; 99.6% identity (99.6% similar) in 261 aa overlap (1-261:1-260)
10 20 30 40 50 60
pF1KB6 MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_872 MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSGA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PLLVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEI
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
NP_872 PLLVEENGAIPK-TPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEI
70 80 90 100 110
130 140 150 160 170 180
pF1KB6 DGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_872 DGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRES
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 CVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_872 CVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPF
180 190 200 210 220 230
250 260
pF1KB6 FEQLSRVDDVYSVLRQPRPGS
:::::::::::::::::::::
NP_872 FEQLSRVDDVYSVLRQPRPGS
240 250 260
>>XP_011509871 (OMIM: 605323) PREDICTED: carboxy-termina (394 aa)
initn: 1639 init1: 1639 opt: 1639 Z-score: 2025.4 bits: 383.0 E(85289): 4.5e-106
Smith-Waterman score: 1639; 99.6% identity (99.6% similar) in 242 aa overlap (20-261:153-394)
10 20 30 40
pF1KB6 MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCVCRD
: ::::::::::::::::::::::::::::
XP_011 SFSPCGPQDLDAAPRSAHPRLGLAAPELRARWKGDQKSAASQKPRSRGILHSLFCCVCRD
130 140 150 160 170 180
50 60 70 80 90 100
pF1KB6 DGEALPAHSGAPLLVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DGEALPAHSGAPLLVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPV
190 200 210 220 230 240
110 120 130 140 150 160
pF1KB6 NNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKW
250 260 270 280 290 300
170 180 190 200 210 220
pF1KB6 GAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNM
310 320 330 340 350 360
230 240 250 260
pF1KB6 SDTELHDLLPFFEQLSRVDDVYSVLRQPRPGS
::::::::::::::::::::::::::::::::
XP_011 SDTELHDLLPFFEQLSRVDDVYSVLRQPRPGS
370 380 390
>>NP_001193807 (OMIM: 605323) carboxy-terminal domain RN (260 aa)
initn: 1275 init1: 1275 opt: 1630 Z-score: 2016.9 bits: 380.8 E(85289): 1.3e-105
Smith-Waterman score: 1630; 96.8% identity (98.0% similar) in 251 aa overlap (12-261:11-260)
10 20 30 40 50
pF1KB6 MDSSAVITQISKEEARGPLRG-KGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSG
.::.:: : .:::::::::::::::::::::::::::::::::::::
NP_001 MVAAPWATQEQEEGRGIQPGDRGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSG
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 APLLVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVE
::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APLLVEENGAIPK-TPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 IDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRE
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 SCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLP
180 190 200 210 220 230
240 250 260
pF1KB6 FFEQLSRVDDVYSVLRQPRPGS
::::::::::::::::::::::
NP_001 FFEQLSRVDDVYSVLRQPRPGS
240 250 260
>>XP_011509872 (OMIM: 605323) PREDICTED: carboxy-termina (393 aa)
initn: 1275 init1: 1275 opt: 1620 Z-score: 2002.0 bits: 378.7 E(85289): 9e-105
Smith-Waterman score: 1620; 99.2% identity (99.2% similar) in 242 aa overlap (20-261:153-393)
10 20 30 40
pF1KB6 MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCVCRD
: ::::::::::::::::::::::::::::
XP_011 SFSPCGPQDLDAAPRSAHPRLGLAAPELRARWKGDQKSAASQKPRSRGILHSLFCCVCRD
130 140 150 160 170 180
50 60 70 80 90 100
pF1KB6 DGEALPAHSGAPLLVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPV
::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
XP_011 DGEALPAHSGAPLLVEENGAIPK-TPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPV
190 200 210 220 230 240
110 120 130 140 150 160
pF1KB6 NNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKW
250 260 270 280 290 300
170 180 190 200 210 220
pF1KB6 GAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNM
310 320 330 340 350 360
230 240 250 260
pF1KB6 SDTELHDLLPFFEQLSRVDDVYSVLRQPRPGS
::::::::::::::::::::::::::::::::
XP_011 SDTELHDLLPFFEQLSRVDDVYSVLRQPRPGS
370 380 390
>>XP_016860106 (OMIM: 605323) PREDICTED: carboxy-termina (276 aa)
initn: 1479 init1: 1479 opt: 1493 Z-score: 1847.3 bits: 349.5 E(85289): 3.7e-96
Smith-Waterman score: 1493; 93.4% identity (96.3% similar) in 241 aa overlap (1-240:1-240)
10 20 30 40 50 60
pF1KB6 MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSGA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PLLVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLLVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 DGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRES
130 140 150 160 170 180
190 200 210 220 230
pF1KB6 CVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHD-LLP
:::::::::::::::::::::::::::::::::::::::: :.: . . .: .. . :
XP_016 CVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVS-AGWTGTGTGAETQEGVSP
190 200 210 220 230
240 250 260
pF1KB6 FFEQLSRVDDVYSVLRQPRPGS
:
XP_016 FRPPWPLGSPVGGWVPSQSFLHSLPVPAAHSPHPPAL
240 250 260 270
>>XP_016860107 (OMIM: 605323) PREDICTED: carboxy-termina (275 aa)
initn: 989 init1: 989 opt: 1474 Z-score: 1823.9 bits: 345.2 E(85289): 7.5e-95
Smith-Waterman score: 1474; 92.9% identity (95.9% similar) in 241 aa overlap (1-240:1-239)
10 20 30 40 50 60
pF1KB6 MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSGA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PLLVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEI
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLLVEENGAIPK-TPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEI
70 80 90 100 110
130 140 150 160 170 180
pF1KB6 DGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRES
120 130 140 150 160 170
190 200 210 220 230
pF1KB6 CVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHD-LLP
:::::::::::::::::::::::::::::::::::::::: :.: . . .: .. . :
XP_016 CVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVS-AGWTGTGTGAETQEGVSP
180 190 200 210 220 230
240 250 260
pF1KB6 FFEQLSRVDDVYSVLRQPRPGS
:
XP_016 FRPPWPLGSPVGGWVPSQSFLHSLPVPAAHSPHPPAL
240 250 260 270
>>XP_016860104 (OMIM: 605323) PREDICTED: carboxy-termina (409 aa)
initn: 1353 init1: 1353 opt: 1367 Z-score: 1689.3 bits: 320.9 E(85289): 2.3e-87
Smith-Waterman score: 1367; 92.3% identity (95.5% similar) in 222 aa overlap (20-240:153-373)
10 20 30 40
pF1KB6 MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCVCRD
: ::::::::::::::::::::::::::::
XP_016 SFSPCGPQDLDAAPRSAHPRLGLAAPELRARWKGDQKSAASQKPRSRGILHSLFCCVCRD
130 140 150 160 170 180
50 60 70 80 90 100
pF1KB6 DGEALPAHSGAPLLVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DGEALPAHSGAPLLVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPV
190 200 210 220 230 240
110 120 130 140 150 160
pF1KB6 NNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKW
250 260 270 280 290 300
170 180 190 200 210 220
pF1KB6 GAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNM
::::::::::::::::::::::::::::::::::::::::::::::::::: :.: .
XP_016 GAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVS-AGWTGTG
310 320 330 340 350 360
230 240 250 260
pF1KB6 SDTELHD-LLPFFEQLSRVDDVYSVLRQPRPGS
. .: .. . ::
XP_016 TGAETQEGVSPFRPPWPLGSPVGGWVPSQSFLHSLPVPAAHSPHPPAL
370 380 390 400
>>XP_016860105 (OMIM: 605323) PREDICTED: carboxy-termina (408 aa)
initn: 989 init1: 989 opt: 1348 Z-score: 1665.9 bits: 316.5 E(85289): 4.7e-86
Smith-Waterman score: 1348; 91.9% identity (95.0% similar) in 222 aa overlap (20-240:153-372)
10 20 30 40
pF1KB6 MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCVCRD
: ::::::::::::::::::::::::::::
XP_016 SFSPCGPQDLDAAPRSAHPRLGLAAPELRARWKGDQKSAASQKPRSRGILHSLFCCVCRD
130 140 150 160 170 180
50 60 70 80 90 100
pF1KB6 DGEALPAHSGAPLLVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPV
::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
XP_016 DGEALPAHSGAPLLVEENGAIPK-TPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPV
190 200 210 220 230 240
110 120 130 140 150 160
pF1KB6 NNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKW
250 260 270 280 290 300
170 180 190 200 210 220
pF1KB6 GAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNM
::::::::::::::::::::::::::::::::::::::::::::::::::: :.: .
XP_016 GAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVS-AGWTGTG
310 320 330 340 350 360
230 240 250 260
pF1KB6 SDTELHD-LLPFFEQLSRVDDVYSVLRQPRPGS
. .: .. . ::
XP_016 TGAETQEGVSPFRPPWPLGSPVGGWVPSQSFLHSLPVPAAHSPHPPAL
370 380 390 400
>>NP_005799 (OMIM: 608592) CTD small phosphatase-like pr (265 aa)
initn: 1185 init1: 1034 opt: 1203 Z-score: 1489.5 bits: 283.3 E(85289): 3.2e-76
Smith-Waterman score: 1203; 70.0% identity (85.6% similar) in 263 aa overlap (1-256:1-261)
10 20 30 40 50
pF1KB6 MDSSAVITQISK-EEARGPLRGKGDQKSAAS---QKPRSRGILHSLFCCVCRD-DGEALP
::. :.:::... .: .: : : :.. : . .: :::.:: :.::: :: . :: :
NP_005 MDGPAIITQVTNPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCF-RDYNVEAPP
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 AHSGA--PLLVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNAD
: . : ::::::.. : :..:::::. . : : :::::::::::::::::..:::
NP_005 PSSPSVLPPLVEENGGLQKP-PAKYLLPEVTVLDYGKKCVVIDLDETLVHSSFKPISNAD
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 FIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFR
::.::::::..:::::::::::::::::::.:::::::::::::::::::::::.::.::
NP_005 FIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 ARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTE
::::::::::::::::::::::::.: .:.:.:::::::.:::.::::: ::::.:.:::
NP_005 ARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTE
180 190 200 210 220 230
240 250 260
pF1KB6 LHDLLPFFEQLSRVDDVYSVLRQPRPGS
: ::.:::: ::: :::::.:..
NP_005 LLDLIPFFEGLSREDDVYSMLHRLCNR
240 250 260
261 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 00:30:10 2016 done: Sat Nov 5 00:30:11 2016
Total Scan time: 5.440 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]