GENSCAN 1.0	Date run:  3-Nov-116	Time: 03:57:02

Sequence gi568815576f:25121430_25331769 : 210340 bp : 46.75% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.03 PlyA -    387    382    6                               1.05
 1.02 Term -   5231   4882  350  0  2   84   49   183 0.946   8.65
 1.01 Init -  14487  14436   52  0  1   65  103    33 0.519   3.83
 1.00 Prom -  22393  22354   40                              -4.46

 2.00 Prom +  23771  23810   40                              -2.46
 2.01 Init +  24758  24844   87  1  0   78   62    31 0.080   0.46
 2.02 Term +  39131  39178   48  1  0  107   48    86 0.667   3.80
 2.03 PlyA +  41311  41316    6                               1.05

 3.00 Prom +  44933  44972   40                              -3.16
 3.01 Init +  48954  49139  186  2  0   56   91    56 0.435  -0.23
 3.02 Intr +  49391  49509  119  1  2   90   75   154 0.918  13.56
 3.03 Intr +  52811  53060  250  2  1   89   95   182 0.984  16.44
 3.04 Intr +  55919  56093  175  1  1   71   67   149 0.250  10.61
 3.05 Intr +  60216  60394  179  1  2   22   76   138 0.187   5.64
 3.06 Intr +  63548  63690  143  1  2   82   78    94 0.912   6.95
 3.07 Term +  70280  70403  124  2  1   95   41   121 0.804   5.96
 3.08 PlyA +  70588  70593    6                               1.05

 4.00 Prom +  75510  75549   40                              -5.26
 4.01 Init +  79968  80042   75  2  0   98   79    59 0.960   7.11
 4.02 Intr +  81245  81363  119  1  2   53   78   194 0.999  14.16
 4.03 Intr +  82334  82466  133  2  1  115   68   104 0.997  11.75
 4.04 Intr +  83791  83933  143  0  2   72   77   215 0.992  17.95
 4.05 Term +  85618  85783  166  1  1   86   48   359 0.999  29.09
 4.06 PlyA +  85899  85904    6                               1.05

 5.00 Prom +  94549  94588   40                              -5.86
 5.01 Init +  94909  94915    7  0  1  108   28     0 0.313  -2.98
 5.02 Intr +  95370  95421   52  1  1   85   61    34 0.409  -1.63
 5.03 Intr +  98134  98237  104  1  2   96   99    57 0.857   7.42
 5.04 Intr +  99975 100054   80  1  2  129   98    63 0.947  10.67
 5.05 Intr + 103489 103607  119  0  2  104  103   110 0.999  13.36
 5.06 Intr + 106424 106556  133  2  1  101   77   157 0.963  16.55
 5.07 Intr + 108007 108149  143  0  2  101  113   251 0.999  28.05
 5.08 Term + 110175 110343  169  0  1  116   39   289 0.932  24.15
 5.09 PlyA + 110418 110423    6                               1.05

 6.00 Prom + 116666 116705   40                              -5.26
 6.01 Init + 120078 120177  100  2  1   78  100    36 0.134   4.22
 6.02 Intr + 141101 141195   95  0  2   59   74    70 0.916   2.38
 6.03 Intr + 141441 141674  234  2  0   75   87   180 0.973  14.49
 6.04 Intr + 142211 142262   52  1  1  127  110    16 0.814   6.18
 6.05 Term + 156116 156210   95  0  2   77   49    56 0.013  -1.41
 6.06 PlyA + 157632 157637    6                               1.05

 7.05 PlyA - 158979 158974    6                               1.05
 7.04 Term - 160862 160693  170  0  2  115   55   131 0.740  10.54
 7.03 Intr - 161025 160909  117  1  0   76   25    81 0.608   1.04
 7.02 Intr - 161861 161249  613  2  1   63   36   382 0.544  22.46
 7.01 Init - 171506 171423   84  2  0   79  115    -1 0.628   2.52
 7.00 Prom - 171710 171671   40                              -4.16

 8.00 Prom + 187874 187913   40                              -3.76
 8.01 Init + 195974 196000   27  1  0   82   90    39 0.239   3.10
 8.02 Intr + 196844 196946  103  1  1   65   84    13 0.265  -1.65
 8.03 Term + 198338 198657  320  0  2  129   39   356 0.914  29.84
 8.04 PlyA + 202356 202361    6                               1.05

 9.00 Prom + 202374 202413   40                              -7.36
 9.01 Init + 205671 205713   43  2  1   69  101    -1 0.561   0.13
 9.02 Intr + 206133 206309  177  1  0   43   98   187 0.927  15.09
 9.03 Intr + 208658 208719   62  0  2   81   81    80 0.717   5.05
 9.04 Intr + 210010 210117  108  0  0   73   86    13 0.251   0.08

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr -  57074  56907  168  2  0   78   82    94 0.872   7.94
S.002 Init -  89745  89659   87  0  0   82  101    63 0.861   7.64


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815576f:25121430_25331769|GENSCAN_predicted_peptide_1|133_aa
MQSIKGLEAFSTVPWAHAVTKKEVNWKDLDVLTTKAQELLHEEQFHTNLMPLSYLFTWAP
RAHLKTFMDNETQHVICQHGYLCTLFKCSTRGSRTSQVFPAKMSATWLPHPTLILPKAEG
NYQEEKNRLLATN

>gi568815576f:25121430_25331769|GENSCAN_predicted_CDS_1|402_bp
atgcaaagcatcaaaggacttgaagcatttagcacagtgccctgggcacatgctgtaaca
aaaaaagaagtgaactggaaggatctagatgttctgacaaccaaggctcaggaactcctc
catgaagaacaattccacaccaacctcatgcccctcagctacctgtttacatgggcacct
agggctcatttaaaaacatttatggataatgaaactcaacacgtcatctgccagcatggc
tacctttgtacgctcttcaaatgcagcaccagaggctccagaacatcccaggtttttcct
gccaagatgtctgcaacgtggctgccacatccaaccctcatccttcccaaagcagaaggc
aattaccaagaagaaaagaacaggctcctagctacgaattaa

>gi568815576f:25121430_25331769|GENSCAN_predicted_peptide_2|44_aa
MATMYGLREVYRVAQSHTAGGQQNQDPTQACTNPRDDRKAFLPH

>gi568815576f:25121430_25331769|GENSCAN_predicted_CDS_2|135_bp
atggctaccatgtatggcctcagagaggtttatcgagttgcccaaagtcacacggctggt
gggcagcagaaccaagacccaacccaggcttgcaccaaccccagagatgaccgcaaggcc
ttcctgccccactga

>gi568815576f:25121430_25331769|GENSCAN_predicted_peptide_3|391_aa
MRLGNTVVVGTWASGCMELPPARSMSLSNTEDERSVPRLYCEEERGPLRWGPGDALQGST
CQDQLKQCFSRQPTEPKDTDTLVHEAGSQYGTWTEQCQSGESLATESPDSSATSTRKQPP
SSRLSSLSSQTEPTSAGDQYDCSRDQRSTSVDHSSTDLESTDGMEGPPPPDACPEKRVDD
FSFIDQTSVLDSSALKTRVQLSKRSRRRAPISHSLRRSRFSESESRSPLEDETDNTWMFK
DSTGPQYMAAADEFSALFFATEEKSPRKEESDEEETASKAERTPVSHPQRMPAFPGMDPA
VLKAQLHKRPEVDSPGETPSWAPQPKSPKSPFQPGVLGSRVLPSSMDKDESIGAHGTCTI
KVSVDVMSTRDSPSLIHKAKFQKALQNKAFS

>gi568815576f:25121430_25331769|GENSCAN_predicted_CDS_3|1176_bp
atgcggttgggaaacacggtggtggtaggaacctgggcaagcgggtgcatggagcttccc
ccagccagatccatgagtctgagtaacactgaagatgagagaagtgtgcccaggctgtac
tgtgaggaggagagagggccattgaggtgggggccaggcgatgccctgcagggctccaca
tgccaggaccagctgaagcagtgtttctcccggcagcccactgaacccaaggacactgac
accctcgtgcacgaagccggcagccagtatgggacgtggacagagcagtgccagagtggg
gagagcttggccactgagtccccagatagcagtgccacatcgacaaggaaacagcccccc
agcagccgtttgtcttctctgtcctcccaaacggagcccacctcggcaggggaccagtat
gactgctccagggaccagcggagcaccagcgtggaccactccagcactgacctggaatcc
accgatgggatggaggggccgcctccaccggacgcctgccctgaaaagagagtagatgac
ttctccttcattgatcaaacctcagtcctcgactcaagtgccctcaagacccgggtgcag
ctcagcaagagaagccgccgccgggcccccatctcccactccctccggcgcagccgattt
agtgagtccgagagcagatcacctttggaggatgagactgacaacacgtggatgttcaaa
gactcaacgggacctcaatacatggcagctgctgatgaattcagtgcccttttctttgca
acagaggagaaatcacccaggaaggaggagtcggatgaggaggagacggcatccaaagct
gagaggacccctgtcagccatcctcagaggatgcctgcgtttccaggcatggatccggca
gtgctaaaggctcagctgcacaagaggccagaggtggacagtcctggcgagacccccagc
tgggcaccccaacccaagagccccaagtcccccttccagcctggggtgctgggcagtcgc
gtgctgccttccagcatggacaaggatgagagtataggagctcatggtacgtgcaccatc
aaagtcagcgttgatgtgatgagcacaagagactcaccatcccttatccacaaagccaaa
ttccagaaagccctgcaaaacaaagctttttcctaa

>gi568815576f:25121430_25331769|GENSCAN_predicted_peptide_4|211_aa
MAEQHGAPEQAAAGKSHGDLGGSYKVILYELENFQGKRCELSAECPSLTDSLLEKVGSIQ
VESGPWLAFESRAFRGEQFVLEKGDYPRWDAWSNSRDSDSLLSLRPLNIDSPHHKLHLFE
NPAFSGRKMEIVDDDVPSLWAHGFQDRVASVRAINGTWVGYEFPGYRGRQYVFERGEYRH
WNEWDASQPQLQSVRRIRDQKWHKRGRFPSS

>gi568815576f:25121430_25331769|GENSCAN_predicted_CDS_4|636_bp
atggcggaacagcacggagcacccgaacaggctgcagctggcaagagccatggagacctt
gggggcagctacaaggtgatcttgtacgaactagagaacttccaaggcaaacgctgcgag
ctctcggccgagtgccccagcctgaccgacagcctgctggagaaggtgggctccatccaa
gtggagtccgggccgtggctggcatttgagtccagggccttccgcggggagcagtttgtt
ctggagaagggggattatcctcgctgggatgcctggtccaacagccgtgatagtgacagc
cttctgtccctccggcctctgaatattgatagtccacatcacaagctgcatctgtttgag
aacccagctttcagtggccgcaagatggagatagtggatgatgacgtgcccagcctgtgg
gctcatggcttccaggaccgtgtggcgagtgtccgtgccatcaacgggacgtgggttggc
tatgagttccccggctaccgtgggcgccagtacgtgtttgagcggggcgagtaccgccac
tggaatgagtgggacgccagccagccgcagctgcagtctgtgcgccgcatccgtgaccag
aagtggcacaagcggggccgcttccccagcagctga

>gi568815576f:25121430_25331769|GENSCAN_predicted_peptide_5|268_aa
MTAPSNLYSTSSLHEFAYPRSTAVTHLGTGTSGEGINATSRWPSFTALAGAGVTGHSCTG
QSTMASDHQTQAGKPQSLNPKIIIFEQENFQGHSHELNGPCPNLKETGVEKAGSVLVQAG
PWVGYEQANCKGEQFVFEKGEYPRWDSWTSSRRTDSLSSLRPIKVDSQEHKIILYENPNF
TGKKMEIIDDDVPSFHAHGYQEKVSSVRVQSGTWVGYQYPGYRGLQYLLEKGDYKDSSDF
GAPHPQVQSVRRIRDMQWHQRGAFHPSN

>gi568815576f:25121430_25331769|GENSCAN_predicted_CDS_5|807_bp
atgactgcccccagtaacctctattctacttccagtctccatgaatttgcctaccctagg
agcacagcggtcactcatcttggcaccggcacttctggggaaggtataaatgccacctcc
cgctggccgagcttcacggcactcgcaggggctggtgtcactggtcattcctgcacagga
cagtccaccatggcctcagatcaccagacccaggcgggcaagccacagtccctcaacccc
aagatcatcatctttgagcaggaaaactttcaaggccactcgcatgagctcaatgggccc
tgccccaacctgaaggaaactggcgtggagaaggcaggttctgtcctagtgcaggctgga
ccctgggtgggctatgaacaggccaactgcaagggcgagcagtttgtgtttgagaagggt
gagtacccccgctgggactcatggaccagcagccgaaggacggactccctcagctccctg
aggcccatcaaagtggacagccaagagcacaagatcatcctctatgaaaaccccaacttc
accgggaagaagatggaaatcatagatgacgatgtacccagcttccacgcccatggctac
caggagaaggtgtcatctgtgcgggtgcagagtggcacgtgggttggctaccagtacccc
ggctaccgtgggctgcagtacctgctggagaagggagactacaaggacagcagcgacttt
ggggcccctcacccccaggtgcagtccgtgcgccgtatccgcgacatgcagtggcaccaa
cgtggtgccttccacccctccaactag

>gi568815576f:25121430_25331769|GENSCAN_predicted_peptide_6|191_aa
MRAQDGMPASESPGIWISTPPIFCYSNGIGFYQENSERLGNIAPFQQKAQKNQGTVASVL
CCTWKAQYMGLCLGPQRSEGSKEQTMGSTQTSATHWSLSPLLQDPSTTRRREKVYDPPPC
NSPMISMDTQRYTLQHPAKTWYLVLECGYESWNSGAILLPDTATIRFLNLFPTFPPFRFH
KTAIVIMAHSQ

>gi568815576f:25121430_25331769|GENSCAN_predicted_CDS_6|576_bp
atgcgtgctcaggatgggatgcctgcctcagaatcccctggaatatggatttccactcca
cccatcttctgctacagcaatggaattggtttctatcaagagaactccgagaggttggga
aatattgctccatttcaacagaaggcccagaaaaatcaaggcaccgtggccagcgttctc
tgctgcacctggaaggcccagtacatgggcttatgtctggggccccagaggagtgagggc
agcaaagaacagacaatgggctccacgcagacctctgcaacacactggagcctgagccca
ctgctgcaggacccatcaacaacaagaaggagggagaaggtgtatgacccccctccctgc
aactctcccatgatctccatggacacccaaagatatacactgcagcacccagcaaagacg
tggtacttggtgttggagtgtggatatgagtcatggaactctggggctatattgctgcca
gacacggcaaccatccgatttctcaatcttttccccacctttcccccctttcgattccac
aaaaccgccattgtcatcatggcccattctcaatga

>gi568815576f:25121430_25331769|GENSCAN_predicted_peptide_7|327_aa
MTCVNTKWLEIYQPYLSWPTGVLLHKCMGAALGTLERSLPESPPPAIRCPISETGTGRPA
PHRQFRGVTRTQDSDDSMPDPPGRRRSLTAAWGRRRGDQRGPGQLVPGIGQDGPLAGAGG
RSRLALLHGHQVTGICQHSLRVRHVGEFWRRRRLLGPGWDALPPPPPPPPAEPRPGGTGA
APGQPLLGAPHQRPASAAGCSPPGSQCAFRSAASRAAPQLIPRGSAGSSRPDAHPEKPWA
PCPLLKGHRGGLCYLDTVVLKRDSINQHPPGGNDEAPALVQATCEQRPAGRAPNLAPERT
RKPAVRIQRRVKAGESCVSQAKQSKVG

>gi568815576f:25121430_25331769|GENSCAN_predicted_CDS_7|984_bp
atgacttgtgttaataccaaatggctggaaatataccaaccctacctgtcatggcctact
ggggtcctgctacataaatgcatgggcgccgcgctgggcactttggagcgctctctcccg
gagtcccccccaccggccatccgatgccccatttcagagactggaacggggaggccggcc
ccgcatcgccagttccgcggtgtcacccgcacccaggacagcgacgactcaatgcccgac
cctcccggacgcaggaggtcgctgacggccgcttggggacggcggcgtggggaccagcgc
gggccggggcagctggtacctgggatcgggcaggacggtcctcttgctggcgcgggcggc
cggagtcgccttgctcttctccatggccatcaggtaactggcatctgccagcacagcctc
cgggtccgccacgttggcgagttttggcggcggcggcggttactcggacccggatgggac
gcgctgccgccaccgccgccgccgccgccagctgagccccgacctggtgggactggggca
gccccagggcagcccctgctcggcgcgccccaccagcgccctgcaagcgccgcaggctgt
agcccgccggggtcgcagtgcgccttccgctccgccgcctcgcgcgccgccccccagctc
attccgcgagggtctgcggggagctcgcggcccgacgctcatccagagaagccctgggcc
ccgtgcccactactcaaggggcatcggggaggcctctgctacctggacacagtagttctc
aaacgggacagcatcaatcagcatcctccaggaggtaatgatgaagcccctgctctggtc
caagctacctgtgaacagcgcccagcgggccgggcccccaacctcgctcctgaacgtacc
cgcaagcccgccgtgagaattcagcgaagagtaaaggctggagaaagttgcgtgtctcag
gctaagcagagcaaagtggggtga

>gi568815576f:25121430_25331769|GENSCAN_predicted_peptide_8|149_aa
MGHGETDARRGSWTGPGCWPRGFQSKHNSVKHVFGSGTQLTVLGQPKATPSVTLFLPSSE
ELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQSNSKYMASSYLSLTPE
QWRSRRSYSCQVMHEGSTAEKTVAPAECS

>gi568815576f:25121430_25331769|GENSCAN_predicted_CDS_8|450_bp
atgggccatggagaaacagatgccaggcgcggctcctggactggccccgggtgctggccc
cgggggtttcaatccaagcataattcagtgaagcatgtgtttggcagcgggacccagctc
accgttttaggtcagcccaaggccaccccctcggtcactctgttcctgccgtcctctgag
gagctccaagccaacaaggccacactggtgtgtctcatgaatgacttctatctgggaatc
ttgacggtgacctggaaggcagatggtacccccatcacccagggcgtggagatgaccacg
ccctccaaacagagcaacagcaagtacatggccagcagctacctgagcctgacgcccgag
cagtggaggtcccgcagaagctacagctgccaggtcatgcatgaagggagcactgcagag
aagacggtggcccctgcagaatgttcatag

>gi568815576f:25121430_25331769|GENSCAN_predicted_peptide_9|130_aa
MGIVRHWGGCGAGHVSSDCGWPRGKAASSYESDIYEAVAAATSESTTVEPGKLDVGATEG
QDLQHISNQKMPTASVLDLEDIALDIAEEVLSEMPPESCHSSNKKEEKLQHHHTLYINDL
FTPSPQLYLK

>gi568815576f:25121430_25331769|GENSCAN_predicted_CDS_9|390_bp
atgggcattgtgaggcactgggggggctgtggggctggacatgtcagctccgactgtggc
tggcccagggggaaggcagcatccagttatgaatctgatatttatgaggccgtggctgct
gcaacatcagaatccactaccgtagagcctggcaagctggatgtgggagccacggagggc
caagacctgcagcacatcagcaaccaaaagatgcccacagcttctgttctggacctggaa
gatattgcgcttgatattgcggaggaggtgttatctgaaatgcctcccgagtcatgtcat
tcttctaataaaaaggaagaaaaacttcaacaccaccatacactttacataaatgacctc
tttactccctcaccacagctgtacctgaag