GENSCAN 1.0	Date run:  3-Nov-116	Time: 04:10:01

Sequence gi568815576r:26499493_26716319 : 216827 bp : 47.51% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.06 Intr -    139     27  113  1  2   92  -57   167 0.224   1.78
 1.05 Intr -   2560   2408  153  1  0   78   87   140 0.779  13.17
 1.04 Intr -   4301   4174  128  0  2   72   78   115 0.998   9.30
 1.03 Intr -   6967   6811  157  1  1  135   67   112 0.999  13.38
 1.02 Intr -   7436   7283  154  1  1   92   18   207 0.998  14.17
 1.01 Init -  10780  10572  209  1  2   59   24   324 0.984  21.39
 1.00 Prom -  11352  11313   40                              -5.16

 2.00 Prom +  11586  11625   40                              -1.86
 2.01 Init +  19905  19992   88  2  1  114   78    32 0.894   5.61
 2.02 Term +  23103  23188   86  1  2   99   42    77 0.888   2.02
 2.03 PlyA +  23425  23430    6                               1.05

 3.07 PlyA -  24083  24078    6                               1.05
 3.06 Term -  26775  26728   48  0  0  101   42    50 0.354  -1.00
 3.05 Intr -  33253  33203   51  1  0  134   66    30 0.895   4.50
 3.04 Intr -  36994  36796  199  0  1  129  100   322 0.965  36.85
 3.03 Intr -  42226  41297  930  0  0  136   89  1715 0.328 166.73
 3.02 Intr -  45183  45112   72  2  0  111  107    26 0.268   5.32
 3.01 Init -  51149  51100   50  2  2   56   84    39 0.236   0.72
 3.00 Prom -  53903  53864   40                              -7.26

 4.00 Prom +  57588  57627   40                              -4.46
 4.01 Sngl +  61034  61669  636  1  0   76   38   836 0.940  73.59
 4.02 PlyA +  62822  62827    6                               1.05

 5.00 Prom +  66256  66295   40                              -7.16
 5.01 Init +  69132  69187   56  2  2  101  100     8 0.185   4.06
 5.02 Intr +  78826  78971  146  1  2   66   89   126 0.363  10.43
 5.03 Term +  79026  79102   77  1  2   94   43    10 0.195  -4.90
 5.04 PlyA +  79496  79501    6                               1.05

 6.07 PlyA -  81491  81486    6                               1.05
 6.06 Term -  89702  89690   13  1  1  136   54     8 0.219  -0.13
 6.05 Intr - 100181 100002  180  1  0  110   89   207 0.520  21.98
 6.04 Intr - 102529 102387  143  1  2  120   85   228 0.999  24.85
 6.03 Intr - 108529 108397  133  0  1   73  101   261 0.997  26.55
 6.02 Intr - 112698 112580  119  0  2   77   84   158 0.948  13.56
 6.01 Init - 116827 116648  180  1  0   85   86   186 0.998  15.55
 6.00 Prom - 118569 118530   40                              -1.16

 7.00 Prom + 120631 120670   40                              -6.86
 7.01 Init + 122474 122494   21  1  0   46  123    30 0.222   0.50
 7.02 Intr + 123742 123860  119  0  2   92   75   186 0.244  16.96
 7.03 Intr + 125989 126130  142  1  1  122   87   140 0.998  17.66
 7.04 Intr + 128796 128938  143  2  2  111   88   130 0.999  14.45
 7.05 Term + 130848 130995  148  0  1  115   47   121 0.951   8.07
 7.06 PlyA + 131155 131160    6                               1.05

 8.00 Prom + 142325 142364   40                              -6.36
 8.01 Sngl + 142693 142905  213  0  0   97   46   211 0.979  12.99
 8.02 PlyA + 143881 143886    6                              -1.95

 9.04 PlyA - 144241 144236    6                              -0.45
 9.03 Term - 145886 145561  326  0  2  -10   47   298 0.771  10.83
 9.02 Intr - 146939 146781  159  0  0   99   91    74 0.987   8.76
 9.01 Init - 147613 147556   58  1  1   84   86    27 0.944   3.76
 9.00 Prom - 148460 148421   40                              -6.36

10.04 PlyA - 152858 152853    6                               1.05
10.03 Term - 169946 169931   16  1  1  127   55    22 0.047   0.51
10.02 Intr - 175130 175001  130  0  1  100   66    74 0.242   6.15
10.01 Init - 206446 206296  151  1  1   64   20   114 0.290   2.40
10.00 Prom - 206524 206485   40                              -0.86

11.02 PlyA - 206773 206768    6                               1.05
11.01 Term - 214528 214434   95  2  2   65   50   116 0.840   3.49

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815576r:26499493_26716319|GENSCAN_predicted_peptide_1|305_aa
MSLSHLYRDGEGRIDDDDDERENFEITDWDLQNEFNPNRQRHWQTKEEATYGVWAERDSD
DERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDSDDEEKPVKQDDFPKDFGPRKLK
TGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQKMGYVPGRGLGKNAQGIINPIE
AKQRKGKGAVGAYGSERTTQSMQDFPVVDSEEEAEEEFQKELSQWRKDPSGSKKKPKYSY
KTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQKVYYSYSQISHKHNVPDDGLPLQS
QQLPH

>gi568815576r:26499493_26716319|GENSCAN_predicted_CDS_1|915_bp
atgtcattgtcccacttataccgggatggggaaggccgcattgatgatgatgatgacgag
cgggagaactttgagatcactgactgggatctccagaatgagttcaaccccaaccgacag
cgccactggcagaccaaggaagaagccacctacggggtgtgggcagagcgagactcggat
gatgagaggcccagctttggaggcaaacgggcccgtgactactctgcgccagtcaacttc
atcagcgcagggctcaagaaaggggcagcggaggaggcagagttggaagattctgatgac
gaagagaaacctgttaagcaggacgactttcctaaggattttggaccaaggaagctaaaa
acgggtggcaattttaagcccagccagaaaggttttgcaggaggaaccaaatctttcatg
gacttcggcagctgggaaagacacacaaaaggaattggacagaagcttcttcagaagatg
ggctacgtccctggacggggcctcgggaagaatgcacaaggtatcattaacccaattgaa
gccaagcagagaaagggaaaaggtgctgtgggggcttatggatccgagcgcaccactcag
tccatgcaagacttccctgtggttgactcagaggaagaagctgaagaggagtttcagaag
gagctgagccagtggaggaaagacccaagtggaagcaagaagaagcccaaatactcttac
aagaccgtggaagagttgaaggccaagggcaggattagcaagaagctcactgctccccag
aaggaactttctcaagtcaaggtcatagacatgacaggccgggagcagaaggtctactac
agctacagtcagatcagccacaagcacaacgttcccgatgatgggctgccgctacagtcc
caacagctgccacan

>gi568815576r:26499493_26716319|GENSCAN_predicted_peptide_2|57_aa
MPSRNGMLIVNYPEQCGFRTQNEANFEDRETHSYSGIKRLYVQENVHCSFASSDENC

>gi568815576r:26499493_26716319|GENSCAN_predicted_CDS_2|174_bp
atgcccagcaggaatggaatgcttattgttaattatcctgagcagtgtgggtttagaaca
cagaatgaggccaactttgaggacagggagactcactcatacagtggcatcaagaggtta
tatgtgcaggagaacgtccactgcagctttgccagtagcgatgaaaactgctaa

>gi568815576r:26499493_26716319|GENSCAN_predicted_peptide_3|449_aa
MAEPEHVGTGPCSRATLALPADSLGTQAQGLEPRDESAQGRCEPGGLPANLSLKPQKRAL
RPGLPCLRPSMRLSVRRVLLAAGCALVLVLAVQLGQQVLECRAVLAGLRSPRGAMRPEQE
ELVMVGTNHVEYRYGKAMPLIFVGGVPRSGTTLMRAMLDAHPEVRCGEETRIIPRVLAMR
QAWSKSGREKLRLDEAGVTDEVLDAAMQAFILEVIAKHGEPARVLCNKDPFTLKSSVYLS
RLFPNSKFLLMVRDGRASVHSMITRKVTIAGFDLSSYRDCLTKWNKAIEVMYAQCMEVGK
EKCLPVYYEQLVLHPRRSLKLILDFLGIAWSDAVLHHEDLIGKPGGVSLSKIERSTDQVI
KPVNLEALSKWTGHIPGDVVRDMAQIAPMLAQLGYDPYANPPNYGNPDPFVINNTQRVLK
GDYKTPANLKGYFQISANDFIAKKRRKCI

>gi568815576r:26499493_26716319|GENSCAN_predicted_CDS_3|1350_bp
atggctgagcctgagcacgtgggcactgggccctgctccagggccactctggctctgcca
gcagacagccttggcacacaggcacaagggctggagcccagagatgagagtgcccaaggg
agatgtgagcctggcgggctgcccgctaacctgtcgctgaagccccagaagcgggccctc
aggccaggcctaccctgcctccggcccagcatgcgcctgtcggtgcggagggtgctgctg
gcagccggctgcgccctggtcctggtgctggcggttcagctgggacagcaggtgctagag
tgccgggcggtgctggcgggcctgcggagcccccggggggccatgcggcctgagcaggag
gagctggtgatggtgggcaccaaccacgtggaataccgctatggcaaggccatgccgctc
atcttcgtgggtggcgtgcctcgcagtggcaccacgttgatgcgcgccatgctggacgcg
caccccgaggtgcgctgcggcgaggagacccgcatcatcccgcgcgtgctggccatgcgc
caggcctggtccaagtctggccgtgagaagctgcggctggatgaggcgggggtgacggat
gaggtgctggacgccgccatgcaggccttcatcctggaggtgattgccaagcacggagag
ccggcccgcgtgctctgcaacaaggacccatttacgctcaagtcctcggtctacctgtcg
cgcctgttccccaactccaagttcctgctgatggtgcgggacggccgggcctccgtgcac
tccatgatcacgcgcaaagtcaccattgcgggctttgacctcagcagctaccgtgactgc
ctcaccaagtggaacaaggccatcgaggtgatgtacgcccagtgcatggaggtaggcaag
gagaagtgcctgcctgtgtactacgagcagctggtgctgcaccccaggcgctcactcaag
ctcatcctcgacttcctcggcatcgcctggagcgacgctgtcctccaccatgaagacctc
attggcaagcccggtggtgtctccctgtccaagatcgagcggtccacggaccaggtcatc
aagcctgttaacctggaagcgctctccaagtggactggccacatccctggggatgtggtg
cgggacatggcccagatcgcccccatgctggctcagctcggctatgacccttatgcaaac
ccccccaactatggcaaccctgaccccttcgtcatcaacaacacacagcgggtcttgaaa
ggggactataaaacaccagccaatctgaaaggatattttcagatctccgcaaatgacttc
attgccaagaagagaagaaaatgcatttaa

>gi568815576r:26499493_26716319|GENSCAN_predicted_peptide_4|211_aa
MSKGDPKKLRGKMSSHAFFGQTCREAHKKKHPDASVNLSEFSKKCSERWKTMSAKEKGKF
EDMAKADKAHYEREMKTYIPPKGETKKKFKDPNAPKRTPSAFFLFCSAYRPKIKGEHPGL
SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK
SKKKKEEEEDEEDEEDEEEEDEEDEDEEDDE

>gi568815576r:26499493_26716319|GENSCAN_predicted_CDS_4|636_bp
atgagcaaaggagatcctaagaagctgagaggcaaaatgtcatcacatgcattttttggg
caaacttgtcgggaggcgcataagaagaagcacccagatgcttcagtcaacctctcagag
ttttctaagaagtgctcagagaggtggaagaccatgtctgctaaagagaaaggaaaattt
gaagatatggcaaaggcggacaaggcccattacgaaagagaaatgaaaacctatatccct
cccaaaggggagacaaaaaagaagttcaaggatccgaatgcacccaagaggactccttcg
gccttcttcctgttctgctctgcgtatcgcccaaaaatcaaaggagaacatcctggcctg
tccattggtgatgttgcgaagaaactgggagagatgtggaataacactgccgcagatgac
aagcagccttatgaaaagaaggctgcgaagctgaaggaaaaatacgaaaaggatattgct
gcatatcgagctaaaggaaagcctgatgcagcaaaaaagggagttgtcaaggctgaaaaa
agcaagaaaaagaaggaagaggaggaagatgaggaagatgaagaggatgaggaggaggaa
gatgaagaagatgaagatgaagaagatgatgaataa

>gi568815576r:26499493_26716319|GENSCAN_predicted_peptide_5|92_aa
MTFTNAIAMPEVTLYGLKSSQRGFSDQQEQRLGTYTKCRLSGLKETTLNGNSGSGVQQPV
LKKPSIHGLCHGDYAWGPQGPQRRKILPRVPQ

>gi568815576r:26499493_26716319|GENSCAN_predicted_CDS_5|279_bp
atgacgtttacaaatgccatagcaatgccagaagttaccctatatggtctaaaaagctct
caacgtgggttctctgaccagcaggaacagcgcttaggaacctacacaaaatgcagatta
tcagggctcaaggagaccacgctgaatgggaactctggaagtggggtacagcaacctgtg
ttgaagaagccctccatccacggactgtgccatggggactatgcctggggaccccaaggt
cctcagagaaggaagattttgcccagagtcccgcagtag

>gi568815576r:26499493_26716319|GENSCAN_predicted_peptide_6|255_aa
MSQAAKASASATVAVNPGPDTKGKGAPPAGTSPSPGTTLAPTTVPITSAKAAELPPGNYR
LVVFELENFQGRRAEFSGECSNLADRGFDRVRSIIVSAGPWVAFEQSNFRGEMFILEKGE
YPRWNTWSSSYRSDRLMSFRPIKMDAQEHKISLFEGANFKGNTIEIQGDDAPSLWVYGFS
DRVGSVKVSSGTWVGYQYPGYRGYQYLLEPGDFRHWNEWGAFQPQMQSLRRLRDKQWHLE
GSFPVLATEPPKWGD

>gi568815576r:26499493_26716319|GENSCAN_predicted_CDS_6|768_bp
atgtctcaggctgcaaaggcctcggcctcggccacagtggcggtgaacccagggcctgac
accaaggggaagggggccccacctgcaggaacatcccctagtcccggcactaccctggcc
ccaacaaccgtgcctattaccagcgccaaggcggcggaactgcctcctgggaactacagg
ctggtggtcttcgaactggaaaacttccagggccgtcgagcagaattctcgggggagtgc
tcaaatctggcagaccgtggcttcgaccgtgtgcgcagcatcattgtctccgcgggaccc
tgggtcgcctttgagcagtccaacttccgcggggagatgttcatcctggagaagggcgag
taccctcgctggaacacatggtcgagcagctaccgcagtgatcggctcatgtccttccgg
cccatcaaaatggatgcccaggagcacaaaatctccctgtttgaaggggccaacttcaag
ggcaacaccatagagatccagggggacgacgcacccagtctctgggtctacggcttcagt
gaccgcgtgggcagcgtgaaggtctccagtggaacatgggttggctatcagtatcctggc
taccgcgggtaccagtacctcctagagcctggtgacttccggcactggaatgagtgggga
gccttccagccacagatgcagtccctgcgtcgcctgcgtgacaagcagtggcacctcgag
gggtccttccctgtcctggccacagagccccccaaatggggagactga

>gi568815576r:26499493_26716319|GENSCAN_predicted_peptide_7|190_aa
MFPGPISMVVWDEDGFQGRRHEFTAECPSVLELGFETVRSLKVLSGAWVGFEHAGFQGQQ
YILERGEYPSWDAWGGNTAYPAERLTSFRPAACANHRDSRLTIFEQENFLGKKGELSDDY
PSLQAMGWEGNEVGSFHVHSGAWVCSQFPGYRGFQYVLECDHHSGDYKHFREWGSHAPTF
QVQSIRRIQQ

>gi568815576r:26499493_26716319|GENSCAN_predicted_CDS_7|573_bp
atgttccctgggcctatctcgatggtggtgtgggatgaggacggcttccagggccggcgg
cacgagttcacggccgagtgccccagcgtgctggagcttggcttcgagactgtgcgatct
ttgaaagtgctgagtggagcgtgggtgggctttgagcatgctggcttccaagggcagcag
tacattctggaacgaggcgaatatccaagctgggatgcctggggcggcaacacggcctac
cccgccgagaggctcacctccttccggcctgcggcctgtgctaaccaccgtgactcgagg
ctgacaatcttcgagcaagagaacttcctgggcaagaaaggagagctgagcgatgactat
ccttccctccaggccatgggatgggaaggcaatgaagtagggtccttccacgtccactct
ggggcctgggtttgctcccagtttccgggctaccgaggatttcagtatgtgctggaatgc
gatcaccattccggtgactacaaacatttccgggagtggggctctcatgccccgaccttc
caggtgcagagcatccgcaggatccagcagtga

>gi568815576r:26499493_26716319|GENSCAN_predicted_peptide_8|70_aa
MDEPAGHYAIMLSDIKTWFLLLPLYLSSHYCSTEIPKSKAVTKTSVGVIREKGTQPPSVK
GGEKLKILHI

>gi568815576r:26499493_26716319|GENSCAN_predicted_CDS_8|213_bp
atggatgaacctgcaggacattatgctattatgctaagtgacatcaagacctggttcctc
ctcctgcccctctacctgagctctcactactgctccactgagatccccaagagcaaagct
gtgacaaagacttcagtgggagtcatcagagaaaaaggaacacaaccacctagcgtgaaa
gggggtgagaagctgaagatcctacacatctag

>gi568815576r:26499493_26716319|GENSCAN_predicted_peptide_9|180_aa
MLTVSSQGLQGPQLLMPSKACPPPHSHATAVLQNSTFLIYEMHLGSLQISCECHNACRRE
AENSGANIFQKAGGTSTKKLISWVEEDGCRPGVVLKGRDADSGHFLAEGQAPRGLPGTPG
VSSSPEAGDGQIRLTDSCVQRLLEITKGSEFLRLQVEGGRCSGFQYRCSLDTVINPDDGI

>gi568815576r:26499493_26716319|GENSCAN_predicted_CDS_9|543_bp
atgctgacggtgtcatcccagggtctccagggaccccagctgcttatgccttctaaagcc
tgcccacccccacacagccacgccacagccgtcctgcagaacagtacattccttatttat
gagatgcatctgggctctctgcaaatcagctgtgaatgccacaatgcctgcaggagggag
gcagagaattctggagccaacatcttccagaaggcaggtggaacctcaacaaagaaattg
atctcctgggtggaggaagatggttgccgcccaggggttgtccttaagggccgcgacgca
gacagcggtcacttcctggccgaggggcaggctcctcgcggcctccctgggactccgggc
gtgtcgtccagccccgaggccggcgacgggcagatccgcctcacggacagctgcgtccag
aggcttctggaaatcaccaaaggatcagaattcctcaggctgcaggtggagggaggtaga
tgctccggattccagtacagatgttcactggatacagttatcaaccccgacgacggtatt
tga

>gi568815576r:26499493_26716319|GENSCAN_predicted_peptide_10|98_aa
MPKAIETKAKFDKWDLIKLKSFCKAKETINRVNRQPTGWEKNFANYASDKAQASGSPFTP
TANYNWLALSPQLPEKRALSTRLAFNDPSNLPLREKAM

>gi568815576r:26499493_26716319|GENSCAN_predicted_CDS_10|297_bp
atgccaaaagcaattgaaacaaaagcaaaatttgacaaatgggatctaattaagctaaag
agcttctgcaaagcaaaagaaactatcaacagagtaaacagacagccaacaggatgggag
aaaaattttgcaaactatgcatctgacaaagctcaggcctctggatcacccttcaccccc
actgccaactacaattggttagctctgagtccacagttgccagagaaaagggctctcagc
accagactagcattcaacgacccaagcaacctgcctctaagagaaaaggccatgtga

>gi568815576r:26499493_26716319|GENSCAN_predicted_peptide_11|31_aa
XTSPKMQKQLSSPLGAANKYKALTSPGLALC

>gi568815576r:26499493_26716319|GENSCAN_predicted_CDS_11|96_bp
nggacatctccaaagatgcagaagcagcttagttctccactaggtgcagccaacaagtac
aaggcactcacgtccccagggctggccctctgctag