FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0467, 217 aa
  1>>>pF1KE0467 217 - 217 aa - 217 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7833+/-0.000341; mu= 17.1192+/- 0.021
 mean_var=63.4101+/-13.005, 0's: 0 Z-trim(114.9): 3  B-trim: 1078 in 1/50
 Lambda= 0.161063
 statistics sampled from 25009 (25011) to 25009 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.293), width:  16
 Scan time:  6.600

The best scores are:                                      opt bits E(85289)
NP_057222 (OMIM: 601683,616733) 5-demethoxyubiquin ( 217) 1428 340.0 1.8e-93
NP_001177912 (OMIM: 601683,616733) 5-demethoxyubiq ( 179) 1172 280.4 1.3e-75


>>NP_057222 (OMIM: 601683,616733) 5-demethoxyubiquinone   (217 aa)
 initn: 1428 init1: 1428 opt: 1428  Z-score: 1799.0  bits: 340.0 E(85289): 1.8e-93
Smith-Waterman score: 1428; 100.0% identity (100.0% similar) in 217 aa overlap (1-217:1-217)

               10        20        30        40        50        60
pF1KE0 MSCAGAAAAPRLWRLRPGARRSLSAYGRRTSVRFRSSGMTLDNISRAAVDRIIRVDHAGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MSCAGAAAAPRLWRLRPGARRSLSAYGRRTSVRFRSSGMTLDNISRAAVDRIIRVDHAGE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 YGANRIYAGQMAVLGRTSVGPVIQKMWDQEKDHLKKFNELMVTFRVRPTVLMPLWNVLGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 YGANRIYAGQMAVLGRTSVGPVIQKMWDQEKDHLKKFNELMVTFRVRPTVLMPLWNVLGF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 ALGAGTALLGKEGAMACTVAVEESIAHHYNNQIRTLMEEDPEKYEELLQLIKKFRDEELE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 ALGAGTALLGKEGAMACTVAVEESIAHHYNNQIRTLMEEDPEKYEELLQLIKKFRDEELE
              130       140       150       160       170       180

              190       200       210       
pF1KE0 HHDIGLDHDAELAPAYAVLKSIIQAGCRVAIYLSERL
       :::::::::::::::::::::::::::::::::::::
NP_057 HHDIGLDHDAELAPAYAVLKSIIQAGCRVAIYLSERL
              190       200       210       

>>NP_001177912 (OMIM: 601683,616733) 5-demethoxyubiquino  (179 aa)
 initn: 1172 init1: 1172 opt: 1172  Z-score: 1478.7  bits: 280.4 E(85289): 1.3e-75
Smith-Waterman score: 1172; 100.0% identity (100.0% similar) in 179 aa overlap (39-217:1-179)

       10        20        30        40        50        60        
pF1KE0 APRLWRLRPGARRSLSAYGRRTSVRFRSSGMTLDNISRAAVDRIIRVDHAGEYGANRIYA
                                     ::::::::::::::::::::::::::::::
NP_001                               MTLDNISRAAVDRIIRVDHAGEYGANRIYA
                                             10        20        30

       70        80        90       100       110       120        
pF1KE0 GQMAVLGRTSVGPVIQKMWDQEKDHLKKFNELMVTFRVRPTVLMPLWNVLGFALGAGTAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GQMAVLGRTSVGPVIQKMWDQEKDHLKKFNELMVTFRVRPTVLMPLWNVLGFALGAGTAL
               40        50        60        70        80        90

      130       140       150       160       170       180        
pF1KE0 LGKEGAMACTVAVEESIAHHYNNQIRTLMEEDPEKYEELLQLIKKFRDEELEHHDIGLDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGKEGAMACTVAVEESIAHHYNNQIRTLMEEDPEKYEELLQLIKKFRDEELEHHDIGLDH
              100       110       120       130       140       150

      190       200       210       
pF1KE0 DAELAPAYAVLKSIIQAGCRVAIYLSERL
       :::::::::::::::::::::::::::::
NP_001 DAELAPAYAVLKSIIQAGCRVAIYLSERL
              160       170         




217 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:42:47 2016 done: Thu Nov  3 06:42:48 2016
 Total Scan time:  6.600 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]