GENSCAN 1.0	Date run:  5-Nov-116	Time: 00:58:09

Sequence gi568815583r:49027953_49255578 : 227626 bp : 37.74% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.10 Intr -    730    501  230  2  2   68   48   183 0.875   8.97
 1.09 Intr -   5148   5013  136  0  1   60   95   140 0.957  11.12
 1.08 Intr -   7706   7382  325  1  1   63  106   174 0.785  11.55
 1.07 Intr -   9817   9639  179  1  2   62   59   140 0.949   6.30
 1.06 Intr -  18113  17926  188  0  2   65   56    50 0.009  -2.01
 1.05 Intr -  18492  18324  169  0  1   20  101   108 0.231   3.90
 1.04 Intr -  22085  21961  125  0  2   59   87    66 0.422   2.98
 1.03 Intr -  24017  23836  182  1  2   90   14   145 0.090   5.89
 1.02 Intr -  35313  34926  388  1  1  -55   43   348 0.063   8.92
 1.01 Init -  36161  36086   76  2  1   96   84    67 0.986   8.40
 1.00 Prom -  42595  42556   40                              -8.15

 2.00 Prom +  44665  44704   40                              -4.25
 2.01 Sngl +  54199  54492  294  0  0   56   48   191 0.674   7.35
 2.02 PlyA +  54797  54802    6                               1.05

 3.00 Prom +  59018  59057   40                              -2.85
 3.01 Init +  71315  71461  147  1  0   69  106   100 0.438  10.04
 3.02 Term +  83201  83434  234  1  0   23   42   207 0.265   4.94
 3.03 PlyA +  83497  83502    6                               1.05

 4.15 PlyA -  84022  84017    6                               1.05
 4.14 Term - 100142  99998  145  1  1   72   42   116 0.613   1.80
 4.13 Intr - 100808 100750   59  2  2   28   97    56 0.613  -2.74
 4.12 Intr - 101607 101525   83  1  2  107   75    -6 0.663  -1.56
 4.11 Intr - 102864 102767   98  2  2   83   95   113 0.978  10.23
 4.10 Intr - 105859 105807   53  1  2   81  116    16 0.989   0.49
 4.09 Intr - 106156 105978  179  2  2   95   94   143 0.978  14.32
 4.08 Intr - 106562 106379  184  2  1   48  -14   145 0.585  -1.26
 4.07 Intr - 109275 109198   78  0  0   79   70    41 0.528   0.23
 4.06 Intr - 111701 111576  126  2  0  113   66    24 0.800   2.66
 4.05 Intr - 116352 116275   78  0  0  115   91    80 0.997   9.83
 4.04 Intr - 117126 117013  114  0  0  110   10   141 0.996   8.22
 4.03 Intr - 121870 121759  112  0  1   60   89    35 0.593   0.26
 4.02 Intr - 127224 127085  140  0  2   21   70   144 0.532   4.24
 4.01 Init - 127626 127573   54  0  0   84   81   138 0.705  14.03
 4.00 Prom - 133667 133628   40                              -7.75

 5.00 Prom + 134260 134299   40                              -5.75
 5.01 Init + 139594 139642   49  0  1   86   58    41 0.524   0.06
 5.02 Intr + 142043 142423  381  0  0  101   47   160 0.865   7.16
 5.03 Intr + 149622 149881  260  1  2   99   25   204 0.056  11.46
 5.04 Intr + 159244 159266   23  0  2   93   86     9 0.002  -3.38
 5.05 Intr + 173210 173298   89  2  2   88   36    88 0.002   2.30
 5.06 Intr + 189238 189361  124  2  1   79   75    74 0.000   3.92
 5.07 Intr + 197451 197561  111  0  0   76   60    75 0.004   2.08
 5.08 Intr + 207899 207989   91  2  1  123   99    69 0.556  10.58
 5.09 Intr + 211269 211415  147  2  0   91   88    33 0.392   3.11
 5.10 Term + 219357 219560  204  2  0   22   40   133 0.034  -1.71
 5.11 PlyA + 219634 219639    6                               1.05

 6.03 PlyA - 221270 221265    6                               1.05
 6.02 Term - 222165 221890  276  0  0   70   38   262 0.528  13.88
 6.01 Intr - 225928 225875   54  1  0   55   32   111 0.439   0.46

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  10908  10897   12  0  0   96   86    14 0.921   1.29
S.002 Term -  35313  34847  467  1  2  -55   41   361 0.907  11.29
S.003 Sngl - 187814 187470  345  2  0   90   28   160 0.801   5.99


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815583r:49027953_49255578|GENSCAN_predicted_peptide_1|666_aa
MGKEEQERKKEKLDGPGQSSREGSACGKLRKSPKIVKRNVKDEAQDKTIAGRHTSRWTSR
GTRCLKKTQAAGLREDVEGSMLVEEHMTDGTWAGYGLAERGGVWLGQSEESRGCRVAQIQ
GKTISLLALPFAESYFYSIKPCTNSPSPHMIQFFRDFVPCIPAAPAMAKRDQGTARAMAS
EGVSPKIWQLPCGIEPVGEQESRIEFGNLCLDFRGCFQLEAGLSWGKGEVLTWNKVCVTF
TRFHPRQKKKSSSENLKWRSRIGVAASQIGAEVRNPVWTRAGGHGESGPRRCLHRLARAR
CGCRHHGPSPHGAGGGLAVAASPLLGEGVRRLQVVPALLGGGLITSSSLPASPIPFSSGM
CFQGGKAFEGFSPRKTNVKLSAEVEPFIPQKKSPDTFMIPMALPNDNGSVSGVEPTPIPS
YLITCYPFVQENQSNRQFPLYNNDIRWQQPNPNPTGPYFAYPIISAQPPVSTEYTYYQLM
PAPCAQVMGFYHPFPTPYSNTFQAANTVNAITTECTERPSQLGQVFPLSSHRSRNSNRGS
VVPKQQLLQQHIKSKRPLVKNVATQKETNAAGPDSRSKIVLLVDASQQTDFPSDIANKSL
SETTATMLWKSKGRRRRASHPTAESSSEQGASEADIDSDSGYCSPKHSNNQPAAGALRNP
DSGTMN

>gi568815583r:49027953_49255578|GENSCAN_predicted_CDS_1|1998_bp
atggggaaggaagagcaggagagaaagaaggagaaacttgatgggccgggacagagcagc
agagaagggtcagcatgtgggaagcttaggaagagccctaaaatagtcaagaggaatgtg
aaagatgaggcccaggacaagaccatagcaggcaggcacacaagccgctggacgtcgaga
ggaacacgttgtttgaagaagacacaagcagctggactgcgagaggacgtggaggggagc
atgctggtggaagagcacatgacagacggcacgtgggcaggctatggactggcagaacgg
ggaggagtttggctggggcagtccgaggagagccggggctgccgagtggcccaaatccag
gggaaaaccatctcgcttttggctctcccatttgctgagagctacttctactcaataaaa
ccttgcactaattctccaagcccacacatgatccaattcttccgggactttgtgccctgc
atcccagccgctccagccatggctaaaagggaccaaggtacagctcgagccatggcttca
gagggtgtaagccccaagatttggcagcttccatgtggtattgagcctgtgggtgaacag
gagtcaagaattgagtttgggaatctctgcctagatttcagaggatgcttccagcttgaa
gcaggactgagctggggaaaaggagaagttttgacgtggaataaagtttgtgtgaccttc
acgagatttcatccaaggcagaaaaagaaatcatcttcagagaatttgaagtggcgtagc
cgaatcggtgtcgcggccagccagataggggcggaggtccggaacccagtctggacccga
gcggggggccatggagaaagcggcccgaggcgctgtttacaccgactagcgcgggcccgt
tgcggctgcaggcaccatggaccgagcccccacggagcaggcggagggctcgccgttgcc
gcttctcccctgcttggtgaaggggtcagaaggctccaagttgtccctgctctcctggga
ggagggcttataacttctagtagtctccccgcttcccccattcccttcagctctggaatg
tgttttcaaggtggaaaggcgtttgaaggcttctcacccagaaagactaatgtcaagctg
tcagctgaggtggagccatttattccccagaagaagagtcctgatacatttatgatccct
atggctctcccaaatgataatggaagtgtttctggtgtggaaccaactccaattcccagc
tacctgattacttgttacccatttgtgcaggaaaaccagtccaatagacagtttccttta
tataacaatgatatacgatggcaacaacccaatccaaaccctactggaccatactttgcc
tatcccattatatctgctcagccgcctgtttctacagagtatacatattatcagctgatg
ccagcaccatgtgcccaggttatgggtttctatcatccttttcctacaccttactccaac
acctttcaggctgcaaatactgtaaatgctatcaccacagaatgcactgagcgtccaagt
cagcttggacaggtcttcccattgtccagccatcgaagcagaaacagtaacagaggatca
gtggtcccaaaacaacagcttttacaacagcacataaaaagcaaaaggccgctggtgaaa
aatgtagctactcagaaagaaacaaatgcagcaggtcctgatagtcgatcaaaaattgtg
cttctggtagatgcttcacagcaaactgatttcccatcagatatcgctaacaagtctctc
tcagagaccactgcaacaatgctctggaagtccaagggcaggagaagaagagcatcccac
cctactgctgaatcttctagtgagcagggggctagtgaagccgacattgacagtgatagt
ggttactgcagtcccaaacacagcaacaaccagcctgcagcaggggctttgagaaatcct
gattctgggaccatgaat

>gi568815583r:49027953_49255578|GENSCAN_predicted_peptide_2|97_aa
MELRIFHKKVKFKVMPEGQGGVNSIKRLFKEPSAQREQCSRTLRQKGEEVQADQASWNTV
SKGDKIQRGESEQRDNHTGFEATIMVGGCVLRRVGNY

>gi568815583r:49027953_49255578|GENSCAN_predicted_CDS_2|294_bp
atggagctcaggatcttccataagaaagtaaaatttaaggtgatgcctgaaggccaagga
ggagttaactcaataaaaaggctctttaaagagcctagtgcccagagggaacagtgttcc
aggaccctaaggcagaaaggagaggaggtgcaggcagaccaggctagttggaatacagtg
agtaaaggtgataagattcagaggggagagagtgagcagagggacaaccatacagggttt
gaagccacaattatggttggaggctgcgtcctaagaagagtgggaaactattga

>gi568815583r:49027953_49255578|GENSCAN_predicted_peptide_3|126_aa
MKEAVMWLSRGNSIPDSEISKCNSLRRDVPGRLEKLQEDEYGRGEMNKKELNNLRTHQAT
NATAGTQARWRKAQEMTHLKQLTQVPVHAVLGPKDRHVQPSMATTGASGVVYLVSLFPVK
FHQSLH

>gi568815583r:49027953_49255578|GENSCAN_predicted_CDS_3|381_bp
atgaaggaagcagtcatgtggctgtccaggggaaatagtattccagactcagaaatcagc
aagtgcaacagcctgaggagggatgtgcctggcaggttggagaaactgcaagaagacgaa
tatggcaggggcgaaatgaacaagaaagagctcaacaacctgcgcacacaccaggccacc
aatgccactgctggcacccaagcaaggtggcggaaggcccaagaaatgacccacctgaag
caactaacacaagtgccagtgcatgctgtcctggggcccaaggacaggcatgtccagcct
tccatggccaccactggggccagtggagtagtctacctggtgtctctgttcccagtaaaa
tttcaccagagcctccactaa

>gi568815583r:49027953_49255578|GENSCAN_predicted_peptide_4|500_aa
MSDMEDDFMCDDEEDYDLALALPFRAQRSGPPLLHTGTERVRNARRSQKTGVSLLLPGLT
AKRNFVPTYGTAVRQDSESIVNGEYCFPKVHFLGLLLAVNTREYSEDSNSEPNVDLENQY
YNSKALKEDDPKAALSSFQKVLELEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLL
TYIRSAVTRNYSEKSINSILDYISTSKQLGKLYLEREEYGKLQKILRQLHQSCQTDDGED
DLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRGKFECGGK
MHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYK
NDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLI
KPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGARYTA
LDKWTNQLNSLNQAVVSKLA

>gi568815583r:49027953_49255578|GENSCAN_predicted_CDS_4|1503_bp
atgtctgacatggaggatgatttcatgtgcgatgatgaggaggactacgacctggccctg
gctttgccctttcgggcccagcgttccgggcccccacttcttcacactggaactgagcgg
gtgcgaaatgctaggagaagtcagaaaacgggggtgtccttactgctcccaggcctgact
gcgaaacgcaactttgtgccaacatatggtacagctgttagacaagactcagaaagcatt
gttaatggtgagtattgttttcctaaagtacatttcttaggacttctattggcggtaaat
acaagagaatactctgaagatagtaactccgagccaaatgtggatttggaaaatcagtac
tataattccaaagcattaaaagaagatgacccaaaagcggcattaagcagtttccaaaag
gttttggaacttgaaggtgaaaaaggagaatggggatttaaagcactgaaacaaatgatt
aagattaacttcaagttgacaaactttccagaaatgatgaatagatataagcagctattg
acctatattcggagtgcagtcacaagaaattattctgaaaaatccattaattctattctt
gattatatctctacttctaaacagcttggaaaattatatttagaacgagaggaatatgga
aagcttcaaaaaattttacgccagttacatcagtcgtgccagactgatgatggagaagat
gatctgaaaaaaggtacacagttattagaaatatatgctttggaaattcaaatgtacaca
gcacagaaaaataacaaaaaacttaaagcactctatgaacagtcacttcacatcaagtct
gccatccctcatccactgattatgggagttatcagaggcaagtttgaatgtggtggtaaa
atgcacttgagggaaggtgaatttgaaaaggcacacactgatttttttgaagccttcaag
aattatgatgaatctggaagtccaagacgaaccacttgcttaaaatatttggtcttagca
aatatgcttatgaaatcgggaataaatccatttgactcacaggaggccaagccgtacaaa
aatgatccagaaattttagcaatgacgaatttagtaagtgcctatcagaataatgacatc
actgaatttgaaaagattctaaaaacaaatcacagcaacatcatggatgatcctttcata
agagaacacattgaagagcttttgcgaaacatcagaacacaagtgcttataaaattaatt
aagccttacacaagaatacatattccttttatttctaaggagttaaacatagatgtagct
gatgtggagagcttgctggtgcagtgcatattggataacactattcatggccgaattgat
caagtcaaccaactccttgaactggatcatcagaagaggggtggtgcacgatatactgca
ctagataaatggaccaaccaactaaattctctcaaccaggctgtagtcagtaaactggct
taa

>gi568815583r:49027953_49255578|GENSCAN_predicted_peptide_5|492_aa
MGFHHVGQAVLELLTSGRKKKTSLVSFARALRRGSCEALVPPWELRAGRRLYLTAAWREP
WLSPGRRSQRRGRLEAATSAKLQDFRRAGAVYLPEENGSCHRSLVIALGALLRHLKLQEK
EGSSEIWLQRALLRVGSRWQNILGINFTNITYISGNGGVGEYCAFSKMHSENHQECGGTY
DPTKATDLSACRCQPMHHPLLVDWFGDPLGGRIFSDSIMEWMNEDNFKHFRYCLGGVGLL
KLKEMFNSKFGSIPKFYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKTYALQ
LANTNPLYPSAVALDCHGSMNPIVDCMWEGSRLHAPYDNPMLDDLRDFSTSANNIQIDKT
KPLWHNYFLCGLKGIQEHFGLSNLTGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLG
RNLSKRNGKPLEGCELGMARCDLHGLSSFTWEYYTIPLTVAREETIRKKREEKKEKKEGR
QMVNALMELKCI

>gi568815583r:49027953_49255578|GENSCAN_predicted_CDS_5|1479_bp
atggggtttcaccatgttggccaggccgttctcgaactcctgacctcagggcgcaaaaag
aaaacctcactagtcagcttcgcacgtgctctgcgcaggggctcctgcgaggccctagtc
cctccctgggagctaagagcaggacggaggctgtacctgactgctgcttggagggaaccc
tggctgagtccagggaggaggagccagaggaggggccgattggaagcagccacctcagcg
aagctgcaggatttccgcagggcgggagctgtttatctcccggaagaaaacggctcctgt
cacagaagtctcgtgattgctctgggagctttgcttagacacttgaaactacaggagaaa
gaaggatctagcgaaatatggctacagagagccctgctacgcgtcgggtccaggtggcag
aacatcctaggtatcaactttacaaacattacttacattagtggtaacggtggagttgga
gagtattgtgccttttccaagatgcacagtgagaatcaccaggagtgtggtggaacttat
gaccctaccaaggccacggatctttcggcctgcagatgtcagcccatgcatcaccctttg
cttgtggactggtttggtgatccactgggtggcaggattttttctgacagcattatggag
tggatgaatgaggataacttcaaacattttaggtactgccttggtggtgttgggttactg
aagctaaaggagatgtttaactccaagtttggatctattcccaagttttatgttcgagca
ccaggaagagtcaacataataggagagcatatagattattgtggatattctgttcttcct
atggctgtagaacaagatgtgctaatagctgtagaacctgtgaaaacgtacgctctccaa
ctggccaatacaaatcccttgtatccatcagcagtggcattagactgtcatggaagcatg
aaccctattgtggactgcatgtgggagggatctaggttgcatgctccttatgataatcca
atgcttgatgatctgagggacttcagtactagtgctaataacatccagattgataaaacc
aagcctttgtggcacaactatttcttatgtggacttaaaggaattcaggaacactttggt
cttagtaacctgactggaatgaactgcctggtagatggaaatatcccaccaagttctggc
ctctccagctccagtgctttggtctgttgtgctggcttggtgacgctcacagtgctggga
aggaatctatccaagcgtaatggaaaacctttggagggctgtgagctggggatggcaaga
tgtgatttacatggattaagttcttttacctgggagtattataccatacccctgacagtg
gcaagagaggaaacaataagaaagaaaagagaagagaaaaaagaaaagaaggaaggaaga
caaatggtcaatgcccttatggaacttaaatgcatatag

>gi568815583r:49027953_49255578|GENSCAN_predicted_peptide_6|109_aa
FCVVVVDDDDDDDAWCFKKGYTRQQFYHKSTPNKGDRVIYNLTRPPYCYVRFPLASTGPH
ILYLSQLASNLELFKRGTGRREQRKEEVTCGMLRKVKTPPNKEEEQAIT

>gi568815583r:49027953_49255578|GENSCAN_predicted_CDS_6|330_bp
ttttgtgtagttgttgttgatgatgatgatgatgatgatgcttggtgttttaagaaaggg
tacactcgccagcagttttaccacaagagtacaccaaacaaaggagacagagtcatttat
aacctgacgcgtccaccctactgctatgtccggtttccattggctagtacgggacctcac
attctgtatttgtcccaattggctagcaacttagaactttttaaaagaggcacgggcaga
cgagaacaaaggaaggaggaagtaacttgtggaatgctgagaaaggtaaaaacacctcca
aataaggaagaggaacaggctataacctaa