GENSCAN 1.0	Date run:  4-Nov-116	Time: 20:26:55

Sequence gi568815594f:40235468_40454517 : 219050 bp : 44.11% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Sngl +   7920   8495  576  2  0   78   40   815 0.993  69.87
 1.02 PlyA +   9647   9652    6                               1.05

 2.03 PlyA -  12291  12286    6                               1.05
 2.02 Term -  20500  20433   68  2  2   70   42    85 0.483   0.20
 2.01 Init -  26001  25935   67  0  1    8   98   119 0.481   4.15
 2.00 Prom -  46179  46140   40                              -1.56

 3.02 PlyA -  46633  46628    6                               1.05
 3.01 Sngl -  59620  59159  462  1  0   98   42   429 0.524  35.46
 3.00 Prom -  61667  61628   40                              -4.46

 4.00 Prom +  63312  63351   40                              -4.26
 4.01 Init +  71862  72023  162  2  0   68   76   126 0.656   9.13
 4.02 Intr +  72810  72861   52  2  1   92   99    36 0.662   3.58
 4.03 Intr +  74859  75024  166  1  1   92   50    31 0.474  -1.28
 4.04 Term +  76998  77169  172  0  1   91   43    74 0.481   0.50
 4.05 PlyA +  78700  78705    6                               1.05

 5.05 PlyA -  79476  79471    6                               1.05
 5.04 Term -  93694  93567  128  2  2   46   36   142 0.565   3.24
 5.03 Intr -  94358  94283   76  2  1   53  110    66 0.919   4.39
 5.02 Intr -  95643  95518  126  0  0   75   89   112 0.991  10.88
 5.01 Init -  95840  95790   51  2  0   58   44    65 0.938  -1.72
 5.00 Prom -  97255  97216   40                              -6.06

 6.00 Prom +  98929  98968   40                              -6.56
 6.01 Init + 100001 100064   64  1  1   63   78     4 0.884  -1.65
 6.02 Intr + 100360 100505  146  2  2   27  101   165 0.978  11.70
 6.03 Intr + 101743 101897  155  0  2   39  108   146 0.944  10.57
 6.04 Term + 105096 105183   88  0  1   55   46    92 0.664  -1.17
 6.05 PlyA + 105635 105640    6                               1.05

 7.00 Prom + 109146 109185   40                              -1.66
 7.01 Init + 113242 113354  113  0  2   73   74    58 0.897   2.58
 7.02 Intr + 113415 113947  533  0  2   89   95   632 0.997  56.57
 7.03 Term + 118512 119053  542  1  2   65   38   391 0.235  26.22
 7.04 PlyA + 119539 119544    6                               1.05

 8.00 Prom + 119635 119674   40                              -4.86
 8.01 Init + 124413 124453   41  2  2   61  105    11 0.264  -0.24
 8.02 Intr + 128228 128359  132  2  0  116   65    61 0.353   6.36
 8.03 Term + 140427 140457   31  0  1  117   42    43 0.050  -0.07
 8.04 PlyA + 142736 142741    6                               1.05

 9.05 PlyA - 146291 146286    6                               1.05
 9.04 Term - 161342 161259   84  2  0   95   44    59 0.401  -0.15
 9.03 Intr - 164005 163985   21  1  0  108   72    19 0.242   0.04
 9.02 Intr - 168974 168943   32  0  2  103  100    32 0.238   3.75
 9.01 Init - 171744 171618  127  0  1   81   98    22 0.184   2.83
 9.00 Prom - 172150 172111   40                              -4.56

10.00 Prom + 182755 182794   40                              -2.96
10.01 Init + 183866 183940   75  1  0   68   80   107 0.414   8.99
10.02 Term + 184205 184300   96  1  0   79   34    17 0.267  -6.63
10.03 PlyA + 184548 184553    6                               1.05

11.05 PlyA - 185256 185251    6                               1.05
11.04 Term - 190676 190437  240  2  0  100   54   314 0.994  25.23
11.03 Intr - 197395 197184  212  2  2  100   80   237 0.962  22.73
11.02 Intr - 201180 200974  207  1  0   27   82   110 0.469   3.35
11.01 Intr - 203457 202304 1154  2  2  135   96  3198 0.788 313.97

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815594f:40235468_40454517|GENSCAN_predicted_peptide_1|191_aa
MLSSIKCVLVGDSAVGKTSLLVRFTSETFPEAYKPTVYENTGVDVFMDGIQISLGLWDTA
GNDAFRSIRPLSYQQADVVLMCYSVANHNSFLNLKNKWIGEIRSNLPCTPVLVVATQTDQ
REMGPHRASCVNAMEGKKLAQDVRAKGYLECSALSNRGVQQVFECAVRTAVNQARRRNRR
RLFSINECKIF

>gi568815594f:40235468_40454517|GENSCAN_predicted_CDS_1|576_bp
atgctgagttccatcaagtgcgtgttggtgggcgactctgctgtggggaaaacctctctg
ttggtgcgcttcacctccgagaccttcccggaggcctacaagcccacagtgtacgagaac
acaggggtggacgtcttcatggatggcatccagatcagcctgggcctctgggacacagcc
ggcaatgacgccttcagaagcatccggcccctgtcctaccagcaggcagacgtggtgctg
atgtgctactctgtggccaaccataactcattcctgaacttgaagaacaagtggattggt
gaaattaggagcaacttgccctgtacccctgtgctggtggtggccacccagactgaccag
cgggagatggggccccacagggcctcctgcgtcaatgccatggaagggaagaaactggcc
caggatgtcagagccaagggctacctggagtgctcagcccttagcaatcggggagtacag
caggtgtttgagtgcgccgtccgaactgccgtcaaccaggccaggagacgaaacagaagg
aggctcttctccatcaatgagtgcaagatcttctaa

>gi568815594f:40235468_40454517|GENSCAN_predicted_peptide_2|44_aa
MGAAAAALLLVVLSGSPLATLSGSSRASDESIIEWKKGSLEQEI

>gi568815594f:40235468_40454517|GENSCAN_predicted_CDS_2|135_bp
atgggagctgctgctgctgcactcttgctggtggtgctaagcggcagtcccctagccacg
ctgtcagggtcatccagagcatcagatgaaagcatcatcgaatggaaaaaagggagtttg
gagcaagagatctaa

>gi568815594f:40235468_40454517|GENSCAN_predicted_peptide_3|153_aa
MEMEAEMEMEVEMEMEAEMEMEAEMEMEVEMEMEAEMEMEAQMEMEMEAEMEMEMEAEME
MEMEAEMEMKMEAEMEMEMEVEMEAEMEMEMEVEMEAEIEVEMEAQMEMEIEAEMEMEAE
MEMEMEAEMEMEMEAEMEMEMEAEMEMEIEAEM

>gi568815594f:40235468_40454517|GENSCAN_predicted_CDS_3|462_bp
atggagatggaggcagagatggagatggaggtggagatggagatggaggcagagatggag
atggaggcagagatggagatggaggtggagatggaaatggaggcagagatggagatggag
gcacagatggagatggagatggaggcagaaatggagatggagatggaggcagagatggag
atggagatggaggcagagatggagatgaagatggaggcagagatggagatggagatggag
gtggagatggaggcagagatggagatggagatggaggtggagatggaggcagagatagag
gtggagatggaggcacagatggagatggagatagaggcagagatggagatggaggcagaa
atggagatggagatggaggcagagatggagatggagatggaggcagagatggagatggag
atggaggcagagatggagatggagattgaggcagagatgtag

>gi568815594f:40235468_40454517|GENSCAN_predicted_peptide_4|183_aa
MPPRPLWFYRLMFVLELEQDEVGNEAYRVTRDGGSSRKDRVIWFLEGILEISSYMGQLKL
REKWLDQGPTAETTQDCYGGSLITRFLPSCSILFNTWLLPRGPKWLLQLQAWFSVSVTGQ
EERNREGMTFSFRQTKPESKEKGSRKLRDLILKQGHRSQCEGATPGQIGHNLSTKVIKDS
NGM

>gi568815594f:40235468_40454517|GENSCAN_predicted_CDS_4|552_bp
atgcccccaaggccactgtggttctacagacttatgtttgtgctcgagttagagcaggat
gaggttggaaatgaagcttacagagttacaagggacggcggtagttccagaaaggacagg
gtcatctggtttttggaaggcatcttggagatttcatcgtacatggggcagttgaagctc
agagagaagtggcttgaccaaggcccaacggcagagacaacccaagactgttatggcggc
tccctgatcaccaggtttcttccatcttgttccattctcttcaacacatggcttctacct
cgtggcccaaaatggctgctccagctccaagcttggttcagcgtttcagtcactggtcag
gaggaaaggaacagagaagggatgactttcagcttcaggcagaccaagcctgaatcaaag
gagaagggatccagaaagttacgtgatctgattttaaagcaaggacacaggagccagtgt
gaaggggctacccctgggcaaatcggacacaatttgagcaccaaagtaattaaggacagc
aatgggatgtga

>gi568815594f:40235468_40454517|GENSCAN_predicted_peptide_5|126_aa
MRRRMAGPGLTPTAAQPGDRDSVVDEELEFPDIGDGGNCGYSQARGWQGEQQGNGSEVQP
LLTAICTNHTCLLAANGAPEFPSPVDSLQWILTLFGIKAKILTGNYKAVRDVSPDFPSPT
LSPSLM

>gi568815594f:40235468_40454517|GENSCAN_predicted_CDS_5|381_bp
atgcgcagacgcatggcagggccagggctgactcccactgcagctcagccaggtgaccgt
gatagtgtcgtggatgaggaattagagtttccagatataggtgatggtgggaactgtggc
tacagccaggccaggggctggcagggtgagcagcaggggaatgggtcagaagttcaacca
ttgctgactgccatctgcaccaaccacacttgcctcctagcagccaacggtgcccctgaa
ttcccttctccagtggattctctccagtggattctcaccttatttggaataaaagccaaa
atccttactggcaactacaaggccgtacgtgatgtctcccccgactttccttctccaaca
ctctccccctcgctcatgtag

>gi568815594f:40235468_40454517|GENSCAN_predicted_peptide_6|150_aa
MNWSHSCISFCWIYFAASRLRAAETADGKYAQKLFNDLFEDYSNALRPVEDTDKVLNVTL
QITLSQIKDMDERNQILTAYLWIRQIWHDAYLTWDRDQYDGLDSIRIPSDLVWRPDIVLY
NKYNIIASQKQVQNIIGNTMGFLSCGKKEK

>gi568815594f:40235468_40454517|GENSCAN_predicted_CDS_6|453_bp
atgaactggtcccattcctgcatctccttttgctggatctactttgctgcttccagactg
agagctgcagagacggcagatggaaaatatgctcagaagttgtttaatgacctttttgaa
gattattctaatgctcttcgtccagtggaagatacagataaagtcctgaatgtgaccctg
cagattacgctctctcagattaaggatatggatgaaagaaaccaaattctgactgcttat
ttgtggatccgccaaatctggcacgatgcctatctcacgtgggaccgagatcagtacgat
ggcctagactccatcaggatccccagtgacctcgtgtggaggccagacatcgtcttatat
aacaaatacaatatcattgcttctcagaagcaggtacagaacatcataggcaacacaatg
ggcttcctgagttgtggcaagaaggagaaatag

>gi568815594f:40235468_40454517|GENSCAN_predicted_peptide_7|395_aa
MEEKDKLELIPDFRATVTGKMVVHCQNTEVMGTVSCLGADDESSEPVNTNVVLRYDGLIT
WDAPAITKSSCVVDVTYFPFDNQQCNLTFGSWTYNGNQVDIFNALDSGDLSDFIEDVEWE
VHGMPAVKNVISYGCCSEPYPDVTFTLLLKRRSSFYIVNLLIPCVLISFLAPLSFYLPAA
SGEKVSLGVTILLAMTVFQLMVAEIMPASENVPLIGKYYIATMALITASTALTIMVMNIH
FCGAEARPVPHWARVVILKYMSRVLFVYDVGESCLSPHHSRERDHLTKVYSKLPESNLKA
ARNKDLSRKKDMNKRLKNDLGCQGKNPQEAESYCAQYKVLTRNIEYIAKCLKDHKATNSK
GSEWKKVAKVIDRFFMWIFFIMVFVMTILIIARAD

>gi568815594f:40235468_40454517|GENSCAN_predicted_CDS_7|1188_bp
atggaggagaaggacaaattagagttgattccagacttccgagccacagtgacaggcaaa
atggtggtccattgccaaaacactgaagtgatggggacagtgagctgtctgggggctgat
gatgaatcttcagagcctgtgaacaccaatgtggtcctgcggtatgatgggctgatcacc
tgggatgcaccggccatcaccaaaagctcctgtgtggtggatgtcacctacttccctttt
gacaaccagcagtgcaacctgacttttggttcctggacctacaatggcaatcaggtggac
atattcaacgccttggacagcggagatctctctgacttcattgaagatgtggaatgggag
gtccatggcatgcccgctgtgaagaatgtgatctcctatggctgctgctctgagccttac
ccggatgtcacattcaccctccttctgaagaggaggtcctcgttctatatcgtcaacctc
ctcatcccatgcgtcctcatatcttttctggctcctctgagtttttatctcccagcagcc
tccggagaaaaggtctccctgggagtgaccatcctgttggccatgactgtatttcagcta
atggtggcagaaatcatgccggcctcagaaaatgtgcccctgataggtaaatactacata
gccacgatggccctgatcacagcctccactgcgttgaccatcatggtgatgaatatccac
ttctgtggggccgaggcccggccggtgccacactgggccagggtggtcatcctgaaatac
atgtccagggtcttgtttgtctatgatgtgggtgaaagctgcctcagcccgcaccacagt
agagagcgggaccacctcacgaaagtttatagcaaactcccagagtctaacctgaaagca
gccaggaacaaagacctttccagaaagaaggacatgaacaaacgcttaaagaacgacctg
ggctgccagggtaagaaccctcaggaggccgagagttactgtgcacagtacaaagtgctg
acgaggaatattgagtacatcgccaagtgcctcaaagaccacaaggccaccaattccaag
gggagtgaatggaagaaggtggcgaaagtcatagaccgattcttcatgtggatttttttc
attatggtgtttgtgatgactattttgatcatagcaagagcggattag

>gi568815594f:40235468_40454517|GENSCAN_predicted_peptide_8|67_aa
MVHQRCPSANVKDCLCVSFSVSLGLRPTLYQCNRDKPGNWTVLDKLETQVLEHLKQLWHS
LIPGHPI

>gi568815594f:40235468_40454517|GENSCAN_predicted_CDS_8|204_bp
atggtccaccaaagatgtccaagtgctaatgtgaaggactgcctctgtgtctccttttcc
gtcagcttagggctcagaccaacgctttaccaatgcaaccgggacaaacctggcaactgg
actgtcttggacaaactggaaacacaagttctagaacatctgaagcaattgtggcactcg
ctcattcctggacatcctatctaa

>gi568815594f:40235468_40454517|GENSCAN_predicted_peptide_9|87_aa
MGQNKGLQAPCKSEIQQGSQVLKLQNGLLCFHVSHPGHTDAKATRAMDTTNQEIKQFFQP
SKTKEQRYDSKVAVHIVKKEYNVTRII

>gi568815594f:40235468_40454517|GENSCAN_predicted_CDS_9|264_bp
atgggccagaacaagggactacaggccccatgcaagtctgaaatccagcagggcagtcaa
gtcttaaagctccaaaatggcctcctttgcttccatgtctcacatccaggtcacactgat
gcaaaagcgacaagggccatggatacaactaatcaggaaataaaacagttcttccagcca
agtaaaaccaaggagcaaagatatgattctaaagttgcagtccatattgtcaaaaaggaa
tataatgtaaccaggatcatctga

>gi568815594f:40235468_40454517|GENSCAN_predicted_peptide_10|56_aa
MQLLYDPRGKGEGPRGWNLDLHKKQLTQGHEPYLMLNSAKVGFLHTFSSFKAATLN

>gi568815594f:40235468_40454517|GENSCAN_predicted_CDS_10|171_bp
atgcagctgctgtatgacccaagaggaaagggtgaaggtcccagaggctggaacctggac
ctgcacaagaaacagttaacacagggccatgaaccctatttaatgttgaacagtgcaaag
gttggatttcttcacactttctcctcctttaaggcagccaccctgaactga

>gi568815594f:40235468_40454517|GENSCAN_predicted_peptide_11|604_aa
XFPPAVDAFDIMTAEDSTAAMSSDSAAGSSAKVPEGVAGAPNEAALLALMERTGYSMVQE
NGQRKYGGPPPGWEGPHPQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDGK
NRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILE
EIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVD
WAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFT
SREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYSRYQKAARGGGAAEAAQQPSYVYSC
DPYTLAYYGYPYNALIGPNRDYFVKAGSIRGRGRGAAGNRAPGPRGSYLGGYSAGRGIYS
RYHEGKGKQQEKGYELVPNLEIPTVNPVAIKPGTVAIPAIGAQYSMFPAAPAPKMIEDGK
IHTVEHMISPIAVQPDPASAAAAAAAAAAAAAAVIPTVSTPPPFQGRPITPVYTVAPNVQ
RIPTAGIYGASYVPFAAPATATIATLQKNAAAAAAMYGGYAGYIPQAFPAAAIQVPIPDV
YQTY

>gi568815594f:40235468_40454517|GENSCAN_predicted_CDS_11|1815_bp
nngtttccgccagctgtggatgcctttgacattatgaccgcagaggattccaccgcagcc
atgagcagtgactcggccgccgggtcctccgccaaggtgcccgagggcgtggcgggcgcg
cccaacgaggcagcactgctggcgctgatggagcgcacgggctacagcatggtgcaagag
aacgggcagcgcaagtacggcggcccaccgcccggctgggagggcccgcacccgcagcgt
ggctgcgaggtcttcgtgggcaagatcccgcgcgacgtgtacgaggacgagctggtgccc
gtgttcgaggccgtgggccgcatctacgagctgcgcctcatgatggactttgacggcaag
aaccgcggctacgccttcgtcatgtactgccacaagcacgaggccaagcgcgcagtgcgt
gagctcaacaactacgagatccgcccgggccgcctgctcggcgtgtgctgcagcgtggac
aactgccgcctcttcatcggcgggatccccaagatgaagaagcgcgaggaaatcctggag
gagattgccaaggtcaccgagggcgtgctggacgtgatcgtctacgccagcgcggccgac
aagatgaagaaccgcggcttcgccttcgtggagtacgagagccaccgcgcggctgccatg
gctcgccgcaagctcatgcctggccgcatccagctgtggggccaccagatcgccgtggac
tgggccgaacctgagatcgacgtggacgaggacgtgatggagaccgtgaagatcctctac
gtgcgcaacctcatgatcgagaccaccgaggacaccatcaagaagagcttcggccagttc
aaccccggctgcgtggagcgcgtcaagaagatccgcgactacgccttcgtgcacttcacc
agccgcgaggatgccgtgcatgccatgaacaacctcaacggcactgagctggagggctcg
tgcctggaggtcacgctggccaagcccgtggacaaggagcagtactcgcgctaccagaag
gcagccaggggcggcggcgcggctgaggcagcgcagcagcccagctacgtgtactcctgc
gacccctacacactggcctactacggctacccctacaacgcgctcattgggcccaacagg
gactactttgtgaaagcaggcagcataagaggccgagggcgaggtgcagctggcaacaga
gccccagggcctaggggttcctacctcgggggatattctgctggtcgtggtatatatagc
cgatatcatgaagggaaaggaaagcagcaagaaaaaggatatgaactggtgccgaatttg
gaaatccctaccgtcaacccagttgccattaaacctggtacagtagccatccctgccatt
ggggctcagtattccatgtttccagcagctccagcccctaaaatgattgaagatggcaaa
atccacacagtggagcacatgatcagccccattgctgtgcagccagacccagccagtgct
gctgccgccgcagccgcggccgcagccgccgcagccgctgtcattcccactgtgtcgacg
ccaccacctttccagggccgcccaataactccagtatacacggtggctccaaacgttcag
agaattcctactgccgggatctacggggccagttacgtgccatttgctgctccagctaca
gccacgatcgccacactacagaagaacgcggcagccgcggccgccatgtatggaggatac
gcaggctacatacctcaggccttccctgctgctgccattcaggtccccatccccgacgtc
taccagacatactga