Result of FASTA (ccds) for pF1KE0486
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0486, 180 aa
  1>>>pF1KE0486 180 - 180 aa - 180 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8996+/-0.000721; mu= 14.1395+/- 0.043
 mean_var=52.9170+/-10.738, 0's: 0 Z-trim(107.9): 14  B-trim: 571 in 1/50
 Lambda= 0.176310
 statistics sampled from 9831 (9840) to 9831 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.302), width:  16
 Scan time:  2.060

The best scores are:                                      opt bits E(32554)
CCDS14025.1 CENPM gene_id:79019|Hs108|chr22        ( 180) 1160 302.5 8.9e-83
CCDS77682.1 CENPM gene_id:79019|Hs108|chr22        ( 146)  953 249.8 5.3e-67
CCDS46720.1 CENPM gene_id:79019|Hs108|chr22        ( 107)  668 177.3 2.7e-45
CCDS77681.1 CENPM gene_id:79019|Hs108|chr22        (  73)  461 124.6 1.4e-29
CCDS46719.1 CENPM gene_id:79019|Hs108|chr22        (  58)  296 82.5 4.8e-17
CCDS77683.1 CENPM gene_id:79019|Hs108|chr22        ( 125)  291 81.4 2.3e-16


>>CCDS14025.1 CENPM gene_id:79019|Hs108|chr22             (180 aa)
 initn: 1160 init1: 1160 opt: 1160  Z-score: 1599.5  bits: 302.5 E(32554): 8.9e-83
Smith-Waterman score: 1160; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KE0 MSVLRPLDKLPGLNTATILLVGTEDALLQQLADSMLKEDCASELKVHLAKSLPLPSSVNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MSVLRPLDKLPGLNTATILLVGTEDALLQQLADSMLKEDCASELKVHLAKSLPLPSSVNR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PRIDLIVFVVNLHSKYSLQNTEESLRHVDASFFLGKVCFLATGAGRESHCSIHRHTVVKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PRIDLIVFVVNLHSKYSLQNTEESLRHVDASFFLGKVCFLATGAGRESHCSIHRHTVVKL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 AHTYQSPLLYCDLEVEGFRATMAQRLVRVLQICAGHVPGVSALNLLSLLRSSEGPSLEDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 AHTYQSPLLYCDLEVEGFRATMAQRLVRVLQICAGHVPGVSALNLLSLLRSSEGPSLEDL
              130       140       150       160       170       180

>>CCDS77682.1 CENPM gene_id:79019|Hs108|chr22             (146 aa)
 initn: 953 init1: 953 opt: 953  Z-score: 1316.4  bits: 249.8 E(32554): 5.3e-67
Smith-Waterman score: 953; 100.0% identity (100.0% similar) in 146 aa overlap (35-180:1-146)

           10        20        30        40        50        60    
pF1KE0 RPLDKLPGLNTATILLVGTEDALLQQLADSMLKEDCASELKVHLAKSLPLPSSVNRPRID
                                     ::::::::::::::::::::::::::::::
CCDS77                               MLKEDCASELKVHLAKSLPLPSSVNRPRID
                                             10        20        30

           70        80        90       100       110       120    
pF1KE0 LIVFVVNLHSKYSLQNTEESLRHVDASFFLGKVCFLATGAGRESHCSIHRHTVVKLAHTY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LIVFVVNLHSKYSLQNTEESLRHVDASFFLGKVCFLATGAGRESHCSIHRHTVVKLAHTY
               40        50        60        70        80        90

          130       140       150       160       170       180
pF1KE0 QSPLLYCDLEVEGFRATMAQRLVRVLQICAGHVPGVSALNLLSLLRSSEGPSLEDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 QSPLLYCDLEVEGFRATMAQRLVRVLQICAGHVPGVSALNLLSLLRSSEGPSLEDL
              100       110       120       130       140      

>>CCDS46720.1 CENPM gene_id:79019|Hs108|chr22             (107 aa)
 initn: 668 init1: 668 opt: 668  Z-score: 926.7  bits: 177.3 E(32554): 2.7e-45
Smith-Waterman score: 668; 99.1% identity (100.0% similar) in 106 aa overlap (1-106:1-106)

               10        20        30        40        50        60
pF1KE0 MSVLRPLDKLPGLNTATILLVGTEDALLQQLADSMLKEDCASELKVHLAKSLPLPSSVNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MSVLRPLDKLPGLNTATILLVGTEDALLQQLADSMLKEDCASELKVHLAKSLPLPSSVNR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PRIDLIVFVVNLHSKYSLQNTEESLRHVDASFFLGKVCFLATGAGRESHCSIHRHTVVKL
       :::::::::::::::::::::::::::::::::::::::::::.::              
CCDS46 PRIDLIVFVVNLHSKYSLQNTEESLRHVDASFFLGKVCFLATGGGRL             
               70        80        90       100                    

              130       140       150       160       170       180
pF1KE0 AHTYQSPLLYCDLEVEGFRATMAQRLVRVLQICAGHVPGVSALNLLSLLRSSEGPSLEDL

>>CCDS77681.1 CENPM gene_id:79019|Hs108|chr22             (73 aa)
 initn: 461 init1: 461 opt: 461  Z-score: 644.7  bits: 124.6 E(32554): 1.4e-29
Smith-Waterman score: 461; 98.6% identity (100.0% similar) in 72 aa overlap (35-106:1-72)

           10        20        30        40        50        60    
pF1KE0 RPLDKLPGLNTATILLVGTEDALLQQLADSMLKEDCASELKVHLAKSLPLPSSVNRPRID
                                     ::::::::::::::::::::::::::::::
CCDS77                               MLKEDCASELKVHLAKSLPLPSSVNRPRID
                                             10        20        30

           70        80        90       100       110       120    
pF1KE0 LIVFVVNLHSKYSLQNTEESLRHVDASFFLGKVCFLATGAGRESHCSIHRHTVVKLAHTY
       :::::::::::::::::::::::::::::::::::::::.::                  
CCDS77 LIVFVVNLHSKYSLQNTEESLRHVDASFFLGKVCFLATGGGRL                 
               40        50        60        70                    

          130       140       150       160       170       180
pF1KE0 QSPLLYCDLEVEGFRATMAQRLVRVLQICAGHVPGVSALNLLSLLRSSEGPSLEDL

>>CCDS46719.1 CENPM gene_id:79019|Hs108|chr22             (58 aa)
 initn: 296 init1: 296 opt: 296  Z-score: 419.4  bits: 82.5 E(32554): 4.8e-17
Smith-Waterman score: 296; 97.9% identity (100.0% similar) in 48 aa overlap (133-180:11-58)

            110       120       130       140       150       160  
pF1KE0 GAGRESHCSIHRHTVVKLAHTYQSPLLYCDLEVEGFRATMAQRLVRVLQICAGHVPGVSA
                                     :.::::::::::::::::::::::::::::
CCDS46                     MGRVWDLPGVLKVEGFRATMAQRLVRVLQICAGHVPGVSA
                                   10        20        30        40

            170       180
pF1KE0 LNLLSLLRSSEGPSLEDL
       ::::::::::::::::::
CCDS46 LNLLSLLRSSEGPSLEDL
               50        

>>CCDS77683.1 CENPM gene_id:79019|Hs108|chr22             (125 aa)
 initn: 294 init1: 277 opt: 291  Z-score: 407.4  bits: 81.4 E(32554): 2.3e-16
Smith-Waterman score: 291; 74.2% identity (83.3% similar) in 66 aa overlap (35-100:1-64)

           10        20        30        40        50        60    
pF1KE0 RPLDKLPGLNTATILLVGTEDALLQQLADSMLKEDCASELKVHLAKSLPLPSSVNRPRID
                                     ::::::::::::::::::::::::::::::
CCDS77                               MLKEDCASELKVHLAKSLPLPSSVNRPRID
                                             10        20        30

           70        80        90       100       110       120    
pF1KE0 LIVFVVNLHSKYSLQNTEESLRHVDASFFLGKVCFLATGAGRESHCSIHRHTVVKLAHTY
       :::::::::::: ..... :   :    : . ::::                        
CCDS77 LIVFVVNLHSKYRIREARTSAFSVVK--FCSLVCFLTLAWPPQSPEHRGVPAPCGCQLLL
               40        50          60        70        80        

          130       140       150       160       170       180
pF1KE0 QSPLLYCDLEVEGFRATMAQRLVRVLQICAGHVPGVSALNLLSLLRSSEGPSLEDL
                                                               
CCDS77 GEGVFPRHRCWAGEPLQHSPAHRGEAGPHLSKPPALL                   
       90       100       110       120                        




180 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 04:54:26 2016 done: Thu Nov  3 04:54:27 2016
 Total Scan time:  2.060 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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