GENSCAN 1.0	Date run:  4-Nov-116	Time: 20:39:40

Sequence gi568815587f:44494663_44719123 : 224461 bp : 49.17% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   6331   6413   83  0  2   93   82    90 0.700   9.34
 1.02 Intr +  28757  28963  207  2  0 -102   25   437 0.256  16.59
 1.03 Intr +  43349  43424   76  2  1   43   70    59 0.032  -0.88
 1.04 Intr +  43710  43830  121  2  1   69   81    74 0.528   4.87
 1.05 Term +  43856  44007  152  0  2   88   53    75 0.358   2.07
 1.06 PlyA +  44244  44249    6                               1.05

 2.03 PlyA -  44673  44668    6                               1.05
 2.02 Term -  46031  45745  287  0  2   67   46   163 0.545   5.57
 2.01 Init -  48043  47665  379  1  1   67   50   325 0.308  23.67
 2.00 Prom -  49220  49181   40                              -7.86

 3.04 PlyA -  50981  50976    6                               1.05
 3.03 Term -  52176  52025  152  1  2   84   47    60 0.025  -0.43
 3.02 Intr -  54820  54717  104  0  2   90  115    10 0.031   3.72
 3.01 Init -  57391  57093  299  1  2   22   71   455 0.445  33.89
 3.00 Prom -  59292  59253   40                              -5.76

 4.00 Prom +  65164  65203   40                              -2.26
 4.01 Init +  66785  66793    9  1  0   89  113     9 0.239   3.51
 4.02 Intr +  74157  74385  229  2  1   55   59   137 0.319   4.94
 4.03 Intr +  76148  76284  137  0  2    3   80    94 0.232   0.39
 4.04 Intr +  84002  84090   89  1  2   99   10    64 0.232  -1.53
 4.05 Intr +  85007  85232  226  2  1   78   68    90 0.397   3.99
 4.06 Intr +  90481  90634  154  0  1   86   20    90 0.169   1.65
 4.07 Intr +  92813  92894   82  0  1   84  115    60 0.160   7.00
 4.08 Intr +  98700  98833  134  0  2   67   76    37 0.150   0.69
 4.09 Intr +  99981 100063   83  1  2  138   78    20 0.899   5.36
 4.10 Intr + 105496 105568   73  0  1  132   57    66 0.801   6.88
 4.11 Intr + 110396 110520  125  0  2  136  105   227 0.987  29.50
 4.12 Intr + 110693 110767   75  1  0  108  121   121 0.991  17.11
 4.13 Intr + 112168 112286  119  0  2   71   55    48 0.130  -0.94
 4.14 Intr + 114166 114351  186  1  0   93   95    28 0.143   2.80
 4.15 Intr + 117026 117131  106  2  1   85   89    61 0.746   6.12
 4.16 Intr + 120610 120711  102  0  0  137   94   198 0.997  25.67
 4.17 Intr + 123500 123703  204  1  0   63   53   233 0.962  16.70
 4.18 Intr + 123978 124061   84  2  0  121   25   162 0.940  13.22
 4.19 Term + 124387 124464   78  0  0  137   54    81 0.941   7.36
 4.20 PlyA + 124945 124950    6                              -0.45

 5.04 PlyA - 125227 125222    6                               1.05
 5.03 Term - 127227 127067  161  1  2   63   55    63 0.363  -1.40
 5.02 Intr - 128881 128774  108  2  0  109   49    49 0.432   3.36
 5.01 Init - 130506 130422   85  0  1   98   44   119 0.640   7.51
 5.00 Prom - 150272 150233   40                              -3.06

 6.00 Prom + 150275 150314   40                              -8.36
 6.01 Init + 151391 151468   78  1  0   67  110    53 0.554   6.46
 6.02 Term + 158028 158141  114  2  0  118   45    47 0.698   1.97
 6.03 PlyA + 160040 160045    6                               1.05

 7.08 PlyA - 162373 162368    6                               1.05
 7.07 Term - 169566 169472   95  1  2   85   43    62 0.102  -0.61
 7.06 Intr - 191524 191442   83  0  2   99   78    23 0.644   1.68
 7.05 Intr - 191761 191702   60  0  0   86  115    90 0.918   9.35
 7.04 Intr - 196597 196466  132  0  0   71   56    52 0.155   0.06
 7.03 Intr - 201651 201604   48  2  0  140   54    33 0.272   2.90
 7.02 Intr - 214450 214364   87  0  0  108   82     4 0.054   0.89
 7.01 Init - 214816 214734   83  1  2   83   91    18 0.060   0.16

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 114233 114351  119  1  2   73   95   114 0.806   8.35


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815587f:44494663_44719123|GENSCAN_predicted_peptide_1|212_aa
MDVGECLVKMKVEIMVMPKIVNKLPEARRRRKKKKKKKKKKEKEKEKEKEKEKEKEKEKE
KEKKKKKKKKKKKRQEEHFRQRNHSMRRAQDIDDLQSASASEEKRPAAYPDVLMPAQKSV
SKDCPRFGGEETKAQRGNGRSWCPPLGVELKPGGSKQPVACSGPPSSPTQNNSDLLVPRR
PQVSSDRQWAWTAVSRAQTAVSETRATPAGDK

>gi568815587f:44494663_44719123|GENSCAN_predicted_CDS_1|639_bp
atggacgtgggagaatgccttgtaaagatgaaggtggagattatggtgatgccaaagatt
gtcaacaaactaccagaagctagaagaagaagaaagaagaagaagaagaagaagaagaag
aaggagaaggagaaggagaaggagaaggagaaggagaaggagaaggagaaggagaaggag
aaggagaagaagaagaagaagaagaagaagaagaagaagaggcaggaagagcatttcagg
cagaggaaccacagcatgcgcagagcccaggatatcgacgatctacaaagcgcgtctgcc
tctgaggaaaagagacctgcagcctacccggatgtgctcatgccagcgcagaagagtgtg
tccaaggattgcccccgctttggaggggaggaaaccaaggctcagagaggaaatgggcgc
tcctggtgtcccccgctgggagtagaactcaagcctggaggctccaagcagcctgtggcc
tgctctgggcctccttcctccccgacgcagaacaactcggatctgctggtcccacggcgt
cctcaggtctcatcggaccgtcagtgggcctggacagcagtgagcagggcccagacggcc
gtttcagagacaagggcgacacctgctggagataagtga

>gi568815587f:44494663_44719123|GENSCAN_predicted_peptide_2|221_aa
MVVLLVTLMVGEVVITLMAMITMLMMVSDENYVVAMVMRMVMVFAMVVMMEMVAMVMTME
VAVAIAMMMQMLVATVMMGVMTVVMRRMVKCDGEVMRGHYGDDNDGGGGDSDDCVADDGG
DPDDNNDAKRKEAQGEESGPGPCCHGEAGDQESGESPLLRKGLRILALDIQPKSDLSRFV
KWPCYIRLQRQRAILYKWLKVPPVINQFTQDLDHQLLSCLS

>gi568815587f:44494663_44719123|GENSCAN_predicted_CDS_2|666_bp
atggtggtgttactagtgacactgatggtgggagaggtggtgataacattgatggcaatg
ataacaatgctgatgatggtatctgatgagaattatgtggttgctatggtgatgaggatg
gtaatggtgtttgctatggtggtgatgatggagatggttgctatggtgatgacgatggag
gtggcggttgctatagcgatgatgatgcagatgctggttgctacagtgatgatgggagtg
atgactgtagtgatgagaagaatggtgaagtgtgatggtgaggtaatgagaggtcattat
ggtgatgataatgatggtggtggtggtgatagtgatgattgtgttgctgatgatggtggt
gatcctgatgacaacaatgatgccaagaggaaagaagcgcagggggaagaaagtggcccc
ggcccctgctgtcatggagaagcaggagaccaagaaagtggtgaatcccctctgttaaga
aaaggcctaagaattttggcactggacatccagcccaaaagtgacctcagccgctttgtg
aaatggccctgctatatcaggttgcagcggcagagagccatcctctataagtggctgaaa
gtgccccctgtgattaaccagttcacccaggacctggaccaccagctactcagctgccta
agctga

>gi568815587f:44494663_44719123|GENSCAN_predicted_peptide_3|184_aa
MSSASPPTPSSFSPLPLQSTITTFTITKTISIVFVIITIIIIIPIITALTKVIMNDIIDI
ITAIFIIVITIIISIFITNNSSFAITIPTHGMTLSPWTVSDSIPLSGTKTSRPAERNVMG
TGSKNFASGITRADGRGSSKGFHLAFTTIIALTLPVRESMWGYCQLLSMSMPIMHAGTGE
MTTG

>gi568815587f:44494663_44719123|GENSCAN_predicted_CDS_3|555_bp
atgtcatcagcgtcaccaccaacaccatcatcattctcaccactaccattacaatccact
atcaccaccttcacaatcaccaagaccatctctattgtgtttgtcatcatcaccatcatc
atcatcatccccatcatcactgcattaaccaaagtcatcatgaatgacatcatcgacatc
atcactgccatcttcatcatcgtcatcacaattattatcagcatcttcattaccaacaac
agtagctttgccatcactattcccacccatggaatgactctcagtccatggactgtcagt
gacagcattcctctctctggaactaagacctctaggccagcagaacgtaatgtcatggga
acagggagcaaaaattttgctagtgggatcactagggctgatggtagaggcagctctaag
ggcttccatttggcctttaccaccataatagcccttaccctaccagtcagggagtcaatg
tgggggtactgccagctgctaagtatgtctatgccaattatgcatgctggcactggggaa
atgaccacaggatga

>gi568815587f:44494663_44719123|GENSCAN_predicted_peptide_4|764_aa
MPKDQTVLPQPMAEQPQVLSVVSDSEHLGPAGTPDSGLTLALAFCSKPLYPLPLPHGKLT
GGGYDLIKNIKRPGAGSVRARKSILESTIVCGRCCYPVGTQAGAWRNGTVASRKPILDII
HADPQLSVDVKFLAKSISNGKLVGPGKRRGRRMASVPARAAKCLGWLNGRFPAWEPGALC
GKHSPFIPSLAGPDLRSRPWKWVSQGHPLQELGSRHGEGSVRWRLGPVGWPLTQEQQWSS
SGTEPLQDGHMARDWIRPQRASDCWSGKQQLFQIIIIIIIVESSLLLCGRHVGTGRSGPC
DQLHWFRGSPALPMQLSQASCPGPSCPAVLAPFAPKGLKAGGWHSWIFWPLSQGSSRTGG
MGSACIKVTKYFLFLFNLIFFILGAVILGFGVWILADKSSFISVLQTSSSSLRMGAYVFI
GVGAVTMLMGFLGCIGAVNEVRCLLGLYFAFLLLILIAQVTAGALFYFNMGKLSPCTAYT
KYSVDHVTLLLSQILTRPSQGRGRIPVLQMKEPFLKSDPVSSRSPQGLPCSTSEMKSTNK
REGRRAALSRRLMLLASLPVFIIIAAIIHFMKACSYLVARVTSLHSQHRPPEHQLQAEPA
PVAMVPVAQLKQEMGGIVTELIRDYNSSREDSLQDAWDYVQAQVKCCGWVSFYNWTDNAE
LMNRPEVTYPCSCEVKGEEDNSLSVRKGFCEAPGNRTQSGNHPEDWPVYQEGCMEKVQAW
LQENLGIILGVGVGVAIIELLGMVLSICLCRHVHSEDYSKVPKY

>gi568815587f:44494663_44719123|GENSCAN_predicted_CDS_4|2295_bp
atgcccaaggaccagacagtcctccctcaacccatggctgagcagccccaagttctgagt
gttgtttcagattcggagcatctggggccagctggcacccctgattctggcttgaccttg
gccttggccttctgctccaaaccgttatacccacttcctctgccccatgggaagctcaca
gggggcggttatgacttaatcaagaacatcaaacggccaggagctggctctgtgagagcc
agaaagagcatcttggagtcaacaattgtttgtggaaggtgctgctatcctgtggggact
caagctggggcctggagaaatgggacggtggcctccaggaagcccatcctggacatcatc
catgcagacccccagctctcagtggatgtcaaattcttggctaaatccatcagcaatgga
aagttggttggccctgggaagaggagaggccggcggatggctagtgttcctgccagagct
gccaagtgtctgggctggttaaatggccgcttccctgcctgggaaccaggggccctctgt
gggaagcacagcccctttattcccagcttggcaggcccagatctccgcagtagaccatgg
aagtgggtctctcagggccaccccttgcaggagctgggctcccgtcatggagagggctca
gtacgctggagactggggcctgtgggctggccccttacccaggagcagcagtggtcatct
tctggcacggagcctctccaggatgggcacatggctagagactggatcaggcctcagagg
gcttcagactgttggtcaggaaagcaacaacttttccagatcatcatcatcatcatcata
gttgagtcctccctgctgctgtgtggacgacacgtgggcacaggcagaagtgggccctgt
gaccagctgcactggtttcgtggaagcccagctctgcccatgcagctgtcccaggccagc
tgtccaggccccagctgcccggcggtgctggctccctttgccccaaagggtctgaaggct
ggcggctggcactcctggattttctggcctctgagtcagggaagctccaggactggcggg
atgggctcagcctgtatcaaagtcaccaaatactttctcttcctcttcaacttgatcttc
tttatcctgggcgcagtgatcctgggcttcggggtgtggatcctggccgacaagagcagt
ttcatctctgtcctgcaaacctcctccagctcgcttaggatgggggcctatgtcttcatc
ggcgtgggggcagtcactatgctcatgggcttcctgggctgcatcggcgccgtcaacgag
gtccgctgcctgctggggctgtactttgctttcctgctcctgatcctcattgcccaggtg
acggccggggccctcttctacttcaacatgggcaagttgagtccatgcacagcatatacc
aagtacagtgttgaccacgttacactcctcctctcgcagatcctcactaggccctctcaa
ggtcgtgggagaatccccgtcctgcagatgaaggagccctttctaaaatctgatcctgtc
tcgagccggagcccccaggggctgccttgcagcacttcagagatgaagagcactaacaaa
cgggaagggcgtcgtgcggcactcagccggaggctgatgttgctggcatcattgccagtg
tttattattattgccgccattattcacttcatgaaggcctgtagctacctggttgccagg
gtgacctccctgcactcccagcacaggcctcctgagcatcagctccaagctgaaccagcc
cctgtggccatggtccccgtggcccagctgaagcaggagatgggcggcatcgtgactgag
ctcattcgagactacaacagcagtcgcgaggacagcctgcaggatgcctgggactacgtg
caggctcaggtgaagtgctgcggctgggtcagcttctacaactggacagacaacgctgag
ctcatgaatcgccctgaggtcacctacccctgttcctgcgaagtcaagggggaagaggac
aacagcctttctgtgaggaagggcttctgcgaggcccccggcaacaggacccagagtggc
aaccaccctgaggactggcctgtgtaccaggagggctgcatggagaaggtgcaggcgtgg
ctgcaggagaacctgggcatcatcctcggcgtgggcgtgggtgtggccatcatcgagctc
ctggggatggtcctgtccatctgcttgtgccggcacgtccattccgaagactacagcaag
gtccccaagtactga

>gi568815587f:44494663_44719123|GENSCAN_predicted_peptide_5|117_aa
MPSAVAACTFLLLPCSLFACCESYLTPKGRGLGWAPGIPQQHLAQTVLSAVGSVCWYVPV
YVWQVLYFANSFEPTLSLPGPVSHRKMEMQLDSNSGPLAPSEKAFMKRHPTALCYPS

>gi568815587f:44494663_44719123|GENSCAN_predicted_CDS_5|354_bp
atgccctccgcagtggctgcctgcactttcctcttgctgccctgctccctctttgcctgc
tgcgagtcctacctcaccccaaagggaaggggccttggatgggccccagggatcccacag
cagcacttggctcagactgtgctgtcagcagtcggcagtgtgtgctggtacgtacctgtg
tacgtgtggcaggtcctctattttgcaaacagctttgagcccaccctcagcctgccaggc
cccgtgtcgcacaggaagatggagatgcagctggactcaaactcaggtccccttgctccc
agtgagaaagcatttatgaaaagacacccaacagctctctgctacccttcctga

>gi568815587f:44494663_44719123|GENSCAN_predicted_peptide_6|63_aa
MRNEARMSAVTTSIQHSTGSFGQCVQVFNEHRASWGWGPSSHLPGTVGPEFTPILQGLGE
LKL

>gi568815587f:44494663_44719123|GENSCAN_predicted_CDS_6|192_bp
atgaggaacgaggcaaggatgtctgctgtcaccacttccattcagcacagtactggaagt
tttggccagtgcgttcaggtgtttaatgagcacagggcatcctggggatggggacccagc
agccacctgccggggaccgtgggccctgagttcactcccatattacaaggcctgggggag
ctgaagctgtga

>gi568815587f:44494663_44719123|GENSCAN_predicted_peptide_7|195_aa
MRWGRRKRGGSHRAAAGAALASAHQVHSLNNSFWLEVWVEIILYPSTHTQSPDLSSRWRN
MGLNDDLEKGPHSLLASSEFFHRLTGMEESSRLVMGLLDGALEGSLAMSPTCGGLSLPCA
VRFTAVIAFNPDNGFVSSANLFLRGISIAHPGGLLPPHPLYPGQNTATIRFLNLFPTFPA
FLFHKAAIVILARSQ

>gi568815587f:44494663_44719123|GENSCAN_predicted_CDS_7|588_bp
atgaggtggggaaggaggaagagaggtggtagccaccgagctgcagctggagcggcccta
gcatctgctcaccaggttcacagtctgaataattccttctggctggaggtgtgggtggag
atcattctttatccatctacccacacgcaatccccagatctatcatccaggtggagaaac
atggggctaaatgatgatcttgaaaagggccctcactctttactggcctcttcagaattc
ttccacaggttgactggaatggaggagtcttcccgcctagtgatggggctgctagacggg
gctctggagggttcactggccatgtccccgacctgtggaggactcagtctaccatgtgct
gtgcgctttactgctgtcattgcattcaatcctgataacggctttgtaagttctgcaaac
ctctttctacgaggtatcagtattgctcatcctggtggcctccttccacctcatcccctg
tacccaggacaaaacacggcaaccatccgatttctcaatcttttccccacctttcccgcc
tttctattccacaaagccgccattgtcatcctggcccgttctcaataa