Result of FASTA (ccds) for pF1KB6725
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6725, 92 aa
  1>>>pF1KB6725 92 - 92 aa - 92 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7300+/-0.000607; mu= 11.4339+/- 0.036
 mean_var=51.9061+/-10.387, 0's: 0 Z-trim(110.6): 47  B-trim: 182 in 1/49
 Lambda= 0.178018
 statistics sampled from 11717 (11766) to 11717 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.361), width:  16
 Scan time:  1.250

The best scores are:                                      opt bits E(32554)
CCDS11307.1 CCL3 gene_id:6348|Hs108|chr17          (  92)  612 164.1 1.1e-41
CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17      (  93)  574 154.3 9.6e-39
CCDS11308.1 CCL4 gene_id:6351|Hs108|chr17          (  92)  395 108.4 6.6e-25
CCDS11306.1 CCL18 gene_id:6362|Hs108|chr17         (  89)  375 103.2 2.3e-23
CCDS32627.2 CCL4L2 gene_id:9560|Hs108|chr17        (  87)  344 95.3 5.5e-21
CCDS11300.1 CCL5 gene_id:6352|Hs108|chr17          (  91)  332 92.2 4.9e-20
CCDS32624.1 CCL14 gene_id:6358|Hs108|chr17         (  93)  318 88.6   6e-19
CCDS45652.1 CCL14 gene_id:6358|Hs108|chr17         ( 109)  290 81.4   1e-16
CCDS77002.1 CCL4L2 gene_id:9560|Hs108|chr17        (  96)  251 71.4 9.3e-14
CCDS77001.1 CCL4L2 gene_id:9560|Hs108|chr17        ( 103)  243 69.4 4.1e-13
CCDS76999.1 CCL4L2 gene_id:9560|Hs108|chr17        (  64)  239 68.2 5.6e-13
CCDS77004.1 CCL4L2 gene_id:9560|Hs108|chr17        (  64)  239 68.2 5.6e-13
CCDS77000.1 CCL4L2 gene_id:9560|Hs108|chr17        ( 103)  241 68.8 5.8e-13
CCDS11281.1 CCL13 gene_id:6357|Hs108|chr17         (  98)  240 68.6 6.7e-13
CCDS77003.1 CCL4L2 gene_id:9560|Hs108|chr17        (  86)  239 68.3 7.2e-13
CCDS59282.1 CCL23 gene_id:6368|Hs108|chr17         ( 120)  240 68.6 7.9e-13
CCDS11305.1 CCL23 gene_id:6368|Hs108|chr17         ( 137)  240 68.6 8.9e-13
CCDS5578.1 CCL26 gene_id:10344|Hs108|chr7          (  94)  237 67.8 1.1e-12
CCDS11304.1 CCL15 gene_id:6359|Hs108|chr17         ( 113)  235 67.3 1.8e-12
CCDS11303.1 CCL16 gene_id:6360|Hs108|chr17         ( 120)  232 66.6 3.3e-12
CCDS11278.1 CCL7 gene_id:6354|Hs108|chr17          (  99)  225 64.7 9.8e-12
CCDS34670.1 CCL24 gene_id:6369|Hs108|chr7          ( 119)  223 64.2 1.6e-11
CCDS11279.1 CCL11 gene_id:6356|Hs108|chr17         (  97)  218 62.9 3.3e-11
CCDS11280.1 CCL8 gene_id:6355|Hs108|chr17          (  99)  216 62.4 4.8e-11
CCDS11277.1 CCL2 gene_id:6347|Hs108|chr17          (  99)  214 61.9 6.9e-11


>>CCDS11307.1 CCL3 gene_id:6348|Hs108|chr17               (92 aa)
 initn: 612 init1: 612 opt: 612  Z-score: 861.8  bits: 164.1 E(32554): 1.1e-41
Smith-Waterman score: 612; 100.0% identity (100.0% similar) in 92 aa overlap (1-92:1-92)

               10        20        30        40        50        60
pF1KB6 MQVSTAALAVLLCTMALCNQFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MQVSTAALAVLLCTMALCNQFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSKP
               10        20        30        40        50        60

               70        80        90  
pF1KB6 GVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
       ::::::::::::::::::::::::::::::::
CCDS11 GVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
               70        80        90  

>>CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17           (93 aa)
 initn: 572 init1: 460 opt: 574  Z-score: 809.0  bits: 154.3 E(32554): 9.6e-39
Smith-Waterman score: 574; 94.6% identity (97.8% similar) in 93 aa overlap (1-92:1-93)

               10        20         30        40        50         
pF1KB6 MQVSTAALAVLLCTMALCNQ-FSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
       :::::::::::::::::::: .:: :::::::::::::::::::::::::::::::::::
CCDS32 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
               10        20        30        40        50        60

      60        70        80        90  
pF1KB6 PGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
       :.:::::::.:::::::::::::::::::::::
CCDS32 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
               70        80        90   

>>CCDS11308.1 CCL4 gene_id:6351|Hs108|chr17               (92 aa)
 initn: 388 init1: 366 opt: 395  Z-score: 560.6  bits: 108.4 E(32554): 6.6e-25
Smith-Waterman score: 395; 57.6% identity (88.0% similar) in 92 aa overlap (1-91:1-92)

               10        20         30        40        50         
pF1KB6 MQVSTAALAVLLCTMALCNQ-FSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
       :.. ...:..:. . :.:.  .:: ...: :::::::::.:..:.::..::.:::: ::.
CCDS11 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
               10        20        30        40        50        60

      60        70        80        90  
pF1KB6 PGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
       :.:.: ::::.:::::::: :::.:: ::::. 
CCDS11 PAVVFQTKRSKQVCADPSESWVQEYVYDLELN 
               70        80        90   

>>CCDS11306.1 CCL18 gene_id:6362|Hs108|chr17              (89 aa)
 initn: 378 init1: 319 opt: 375  Z-score: 533.1  bits: 103.2 E(32554): 2.3e-23
Smith-Waterman score: 375; 60.9% identity (81.5% similar) in 92 aa overlap (1-92:1-89)

               10        20        30        40        50        60
pF1KB6 MQVSTAALAVLLCTMALCNQFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSKP
       :.  .::: ::.::::::   : . .. .   ::. ::: ::::.::.:: ::: :: ::
CCDS11 MKGLAAALLVLVCTMALC---SCAQVGTNKELCCLVYTSWQIPQKFIVDYSETSPQCPKP
               10           20        30        40        50       

               70        80        90  
pF1KB6 GVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
       :::.::::.::.::::...:::::.:::.:.:
CCDS11 GVILLTKRGRQICADPNKKWVQKYISDLKLNA
        60        70        80         

>>CCDS32627.2 CCL4L2 gene_id:9560|Hs108|chr17             (87 aa)
 initn: 342 init1: 212 opt: 344  Z-score: 490.2  bits: 95.3 E(32554): 5.5e-21
Smith-Waterman score: 344; 52.2% identity (83.7% similar) in 92 aa overlap (1-91:1-87)

               10         20        30        40        50         
pF1KB6 MQVSTAALAVLLCTMALCN-QFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
       :.. ...:..:. . :.:.  .:: ...: :::::::::.:..:.::..::.:::: ::.
CCDS32 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
               10        20        30        40        50        60

      60        70        80        90  
pF1KB6 PGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
       :.:.     ..:::::::: :::.:: ::::. 
CCDS32 PAVV-----GKQVCADPSESWVQEYVYDLELN 
                    70        80        

>>CCDS11300.1 CCL5 gene_id:6352|Hs108|chr17               (91 aa)
 initn: 344 init1: 323 opt: 332  Z-score: 473.3  bits: 92.2 E(32554): 4.9e-20
Smith-Waterman score: 332; 49.5% identity (81.3% similar) in 91 aa overlap (1-91:1-91)

               10        20        30        40        50        60
pF1KB6 MQVSTAALAVLLCTMALCNQFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSKP
       :.::.:::::.: . :::   :::  ..  : :::.: .: .:.  : .:: ::..::.:
CCDS11 MKVSAAALAVILIATALCAPASASPYSSDTTPCCFAYIARPLPRAHIKEYFYTSGKCSNP
               10        20        30        40        50        60

               70        80        90  
pF1KB6 GVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
       .:.:.:...:::::.: ..::..:...::.: 
CCDS11 AVVFVTRKNRQVCANPEKKWVREYINSLEMS 
               70        80        90  

>>CCDS32624.1 CCL14 gene_id:6358|Hs108|chr17              (93 aa)
 initn: 299 init1: 279 opt: 318  Z-score: 453.7  bits: 88.6 E(32554): 6e-19
Smith-Waterman score: 318; 48.4% identity (82.4% similar) in 91 aa overlap (1-89:1-91)

               10         20         30        40        50        
pF1KB6 MQVSTAALAV-LLCTMALCNQF-SASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCS
       :..:.::.   :: :.:: ..  :.: .   :. :::.::. .::.. : ::.::.::::
CCDS32 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
               10        20        30        40        50        60

       60        70        80        90  
pF1KB6 KPGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
       :::..:.:::...::..::..::: :..:..   
CCDS32 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN 
               70        80        90    

>>CCDS45652.1 CCL14 gene_id:6358|Hs108|chr17              (109 aa)
 initn: 292 init1: 279 opt: 290  Z-score: 413.8  bits: 81.4 E(32554): 1e-16
Smith-Waterman score: 290; 55.0% identity (91.7% similar) in 60 aa overlap (30-89:48-107)

                10        20        30        40        50         
pF1KB6  MQVSTAALAVLLCTMALCNQFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
                                     :. :::.::. .::.. : ::.::.:::::
CCDS45 LGTKTESSSQTGGKPKVVKIQLKLVGGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCSK
        20        30        40        50        60        70       

      60        70        80        90  
pF1KB6 PGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
       ::..:.:::...::..::..::: :..:..   
CCDS45 PGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN 
        80        90       100          

>>CCDS77002.1 CCL4L2 gene_id:9560|Hs108|chr17             (96 aa)
 initn: 234 init1: 212 opt: 251  Z-score: 360.5  bits: 71.4 E(32554): 9.3e-14
Smith-Waterman score: 251; 43.2% identity (76.5% similar) in 81 aa overlap (1-80:1-81)

               10         20        30        40        50         
pF1KB6 MQVSTAALAVLLCTMALCN-QFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
       :.. ...:..:. . :.:.  .:: ...: :::::::::.:..:.::..::.:::: ::.
CCDS77 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
               10        20        30        40        50        60

      60        70        80        90     
pF1KB6 PGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA   
       :.:.    :  .. : :   :               
CCDS77 PAVVAAPGRIPSTRAAPHGPWSGRGRCLPQARDKAR
               70        80        90      

>>CCDS77001.1 CCL4L2 gene_id:9560|Hs108|chr17             (103 aa)
 initn: 238 init1: 216 opt: 243  Z-score: 348.9  bits: 69.4 E(32554): 4.1e-13
Smith-Waterman score: 243; 47.7% identity (87.7% similar) in 65 aa overlap (1-64:1-65)

               10         20        30        40        50         
pF1KB6 MQVSTAALAVLLCTMALCN-QFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
       :.. ...:..:. . :.:.  .:: ...: :::::::::.:..:.::..::.:::: ::.
CCDS77 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
               10        20        30        40        50        60

      60        70        80        90            
pF1KB6 PGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA          
       :.:..                                      
CCDS77 PAVVYRESASSAAPGRIPSTRAAPHGPWSGRGRCLPQARDKAR
               70        80        90       100   




92 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:36:50 2016 done: Fri Nov  4 23:36:50 2016
 Total Scan time:  1.250 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com