Result of FASTA (omim) for pF1KB6763
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6763, 113 aa
  1>>>pF1KB6763 113 - 113 aa - 113 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5664+/-0.000282; mu= 14.0553+/- 0.018
 mean_var=54.9561+/-10.587, 0's: 0 Z-trim(118.3): 57  B-trim: 136 in 2/50
 Lambda= 0.173008
 statistics sampled from 30988 (31046) to 30988 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.756), E-opt: 0.2 (0.364), width:  16
 Scan time:  3.760

The best scores are:                                      opt bits E(85289)
NP_116741 (OMIM: 601393) C-C motif chemokine 15 pr ( 113)  754 195.2 1.8e-50
NP_665905 (OMIM: 602494) C-C motif chemokine 23 is ( 120)  541 142.1   2e-34
NP_005055 (OMIM: 602494) C-C motif chemokine 23 is ( 137)  312 85.0 3.5e-17
NP_116738 (OMIM: 601392) C-C motif chemokine 14 is ( 109)  269 74.2   5e-14
NP_066286 (OMIM: 601395,609423) C-C motif chemokin (  93)  243 67.6 3.9e-12
NP_001001437 (OMIM: 609468) C-C motif chemokine 3- (  93)  243 67.6 3.9e-12
NP_002974 (OMIM: 182283,609423) C-C motif chemokin (  92)  235 65.6 1.6e-11
NP_116739 (OMIM: 601392) C-C motif chemokine 14 is (  93)  220 61.9 2.1e-10
NP_002979 (OMIM: 603757) C-C motif chemokine 18 pr (  89)  202 57.4 4.6e-09
NP_996890 (OMIM: 603782) C-C motif chemokine 4-lik (  92)  198 56.4 9.4e-09
NP_002976 (OMIM: 187011) C-C motif chemokine 5 iso (  91)  190 54.4 3.7e-08
NP_002975 (OMIM: 182284) C-C motif chemokine 4 pre (  92)  190 54.4 3.7e-08
NP_006264 (OMIM: 158106) C-C motif chemokine 7 pre (  99)  176 50.9 4.5e-07
NP_002978 (OMIM: 601520) C-C motif chemokine 17 pr (  94)  171 49.7   1e-06
XP_011521558 (OMIM: 601520) PREDICTED: C-C motif c ( 122)  171 49.7 1.3e-06
XP_016879019 (OMIM: 601520) PREDICTED: C-C motif c ( 123)  171 49.7 1.3e-06
NP_002981 (OMIM: 602957) C-C motif chemokine 22 pr (  93)  168 48.9 1.7e-06
XP_016879020 (OMIM: 602957) PREDICTED: C-C motif c (  93)  168 48.9 1.7e-06
NP_005399 (OMIM: 601391) C-C motif chemokine 13 pr (  98)  168 48.9 1.8e-06
NP_005614 (OMIM: 602283) C-C motif chemokine 8 pre (  99)  164 47.9 3.6e-06
XP_016867161 (OMIM: 604697) PREDICTED: C-C motif c (  94)  163 47.7 4.1e-06
NP_006063 (OMIM: 604697) C-C motif chemokine 26 pr (  94)  163 47.7 4.1e-06
NP_002982 (OMIM: 602495) C-C motif chemokine 24 pr ( 119)  163 47.7 4.9e-06
XP_011514761 (OMIM: 602495) PREDICTED: C-C motif c ( 119)  163 47.7 4.9e-06
XP_011514762 (OMIM: 602495) PREDICTED: C-C motif c ( 119)  163 47.7 4.9e-06
XP_016867160 (OMIM: 604697) PREDICTED: C-C motif c ( 148)  163 47.8 5.8e-06
NP_006265 (OMIM: 602227) C-C motif chemokine 19 pr (  98)  160 46.9 7.1e-06
NP_001278397 (OMIM: 610757) C-C motif chemokine 4- (  87)  158 46.4 9.1e-06
NP_002977 (OMIM: 600807,601156,609423) eotaxin pre (  97)  148 43.9 5.6e-05
NP_002980 (OMIM: 602737) C-C motif chemokine 21 pr ( 134)  147 43.8 8.6e-05
XP_011516306 (OMIM: 602737) PREDICTED: C-C motif c ( 145)  147 43.8 9.1e-05
NP_002972 (OMIM: 182281) C-C motif chemokine 1 pre (  96)  142 42.4 0.00016
NP_004581 (OMIM: 601394) C-C motif chemokine 16 pr ( 120)  142 42.5 0.00019
XP_005258077 (OMIM: 601394) PREDICTED: C-C motif c ( 120)  142 42.5 0.00019
NP_002973 (OMIM: 158105,182940,607948,609423) C-C  (  99)  139 41.7 0.00027
NP_002986 (OMIM: 600250) lymphotactin precursor [H ( 114)  136 41.0 0.00051
XP_011508167 (OMIM: 600250) PREDICTED: lymphotacti ( 114)  136 41.0 0.00051
NP_003166 (OMIM: 604828) cytokine SCM-1 beta precu ( 114)  136 41.0 0.00051
NP_001278401 (OMIM: 610757) C-C motif chemokine 4- (  96)  135 40.7 0.00052
NP_001278404 (OMIM: 610757) C-C motif chemokine 4- ( 103)  128 39.0  0.0019
NP_001278400 (OMIM: 610757) C-C motif chemokine 4- ( 103)  122 37.5  0.0053


>>NP_116741 (OMIM: 601393) C-C motif chemokine 15 prepro  (113 aa)
 initn: 754 init1: 754 opt: 754  Z-score: 1026.9  bits: 195.2 E(85289): 1.8e-50
Smith-Waterman score: 754; 100.0% identity (100.0% similar) in 113 aa overlap (1-113:1-113)

               10        20        30        40        50        60
pF1KB6 MKVSVAALSCLMLVAVLGSQAQFTNDAETELMMSKLPLENPVVLNSFHFAADCCTSYISQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 MKVSVAALSCLMLVAVLGSQAQFTNDAETELMMSKLPLENPVVLNSFHFAADCCTSYISQ
               10        20        30        40        50        60

               70        80        90       100       110   
pF1KB6 SIPCSLMKSYFETSSECSKPGVIFLTKKGRQVCAKPSGPGVQDCMKKLKPYSI
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 SIPCSLMKSYFETSSECSKPGVIFLTKKGRQVCAKPSGPGVQDCMKKLKPYSI
               70        80        90       100       110   

>>NP_665905 (OMIM: 602494) C-C motif chemokine 23 isofor  (120 aa)
 initn: 541 init1: 308 opt: 541  Z-score: 739.2  bits: 142.1 E(85289): 2e-34
Smith-Waterman score: 541; 74.5% identity (88.2% similar) in 110 aa overlap (1-109:1-110)

               10        20        30        40         50         
pF1KB6 MKVSVAALSCLMLVAVLGSQAQFTNDAETELMMSKLPLENPVVLNSFH-FAADCCTSYIS
       ::::::::::::::..:::::. :.:::::.:::::::::::.:. ::  .:::: ::  
NP_665 MKVSVAALSCLMLVTALGSQARVTKDAETEFMMSKLPLENPVLLDRFHATSADCCISYTP
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB6 QSIPCSLMKSYFETSSECSKPGVIFLTKKGRQVCAKPSGPGVQDCMKKLKPYSI      
       .::::::..:::::.::::::::::::::::. ::.::   :: ::. ::          
NP_665 RSIPCSLLESYFETNSECSKPGVIFLTKKGRRFCANPSDKQVQVCMRMLKLDTRIKTRKN
               70        80        90       100       110       120

>>NP_005055 (OMIM: 602494) C-C motif chemokine 23 isofor  (137 aa)
 initn: 524 init1: 308 opt: 312  Z-score: 429.5  bits: 85.0 E(85289): 3.5e-17
Smith-Waterman score: 498; 64.6% identity (77.2% similar) in 127 aa overlap (1-109:1-127)

               10        20        30        40                    
pF1KB6 MKVSVAALSCLMLVAVLGSQAQFTNDAETELMMSKLPLENPVVLN---------------
       ::::::::::::::..:::::. :.:::::.:::::::::::.:.               
NP_005 MKVSVAALSCLMLVTALGSQARVTKDAETEFMMSKLPLENPVLLDMLWRRKIGPQMTLSH
               10        20        30        40        50        60

             50        60        70        80        90       100  
pF1KB6 --SFH-FAADCCTSYISQSIPCSLMKSYFETSSECSKPGVIFLTKKGRQVCAKPSGPGVQ
         .::  .:::: ::  .::::::..:::::.::::::::::::::::. ::.::   ::
NP_005 AAGFHATSADCCISYTPRSIPCSLLESYFETNSECSKPGVIFLTKKGRRFCANPSDKQVQ
               70        80        90       100       110       120

            110         
pF1KB6 DCMKKLKPYSI      
        ::. ::          
NP_005 VCMRMLKLDTRIKTRKN
              130       

>>NP_116738 (OMIM: 601392) C-C motif chemokine 14 isofor  (109 aa)
 initn: 267 init1: 216 opt: 269  Z-score: 372.9  bits: 74.2 E(85289): 5e-14
Smith-Waterman score: 269; 36.4% identity (75.5% similar) in 110 aa overlap (1-109:1-107)

               10         20        30        40        50         
pF1KB6 MKVSVAALSCLMLVAV-LGSQAQFTNDAETELMMSKLPLENPVVLNSFHFAADCCTSYIS
       ::.::::.  ..:... ::.... ....  .  . :. :.  .: . .:  ..:: .: .
NP_116 MKISVAAIPFFLLITIALGTKTESSSQTGGKPKVVKIQLK--LVGGPYH-PSECCFTYTT
               10        20        30        40           50       

      60        70        80        90       100       110   
pF1KB6 QSIPCSLMKSYFETSSECSKPGVIFLTKKGRQVCAKPSGPGVQDCMKKLKPYSI
        .:: . . .:.::.:.:::::..:.::.:..::..::   ::: .: .:    
NP_116 YKIPRQRIMDYYETNSQCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN  
        60        70        80        90       100           

>>NP_066286 (OMIM: 601395,609423) C-C motif chemokine 3-  (93 aa)
 initn: 280 init1: 233 opt: 243  Z-score: 338.8  bits: 67.6 E(85289): 3.9e-12
Smith-Waterman score: 243; 48.3% identity (69.0% similar) in 87 aa overlap (27-109:6-90)

               10        20        30        40        50          
pF1KB6 MKVSVAALSCLMLVAVLGSQAQFTNDAETELMMSKLPLENPVVLNSFHFAAD----CCTS
                                 :   ...  . : : :.  :  .:::    :: :
NP_066                      MQVSTAALAVLLCTMALCNQVL--SAPLAADTPTACCFS
                                    10        20          30       

         60        70        80        90       100       110   
pF1KB6 YISQSIPCSLMKSYFETSSECSKPGVIFLTKKGRQVCAKPSGPGVQDCMKKLKPYSI
       : :..:: ... .::::::.::::.::::::.:::::: ::   ::  .. :.    
NP_066 YTSRQIPQNFIADYFETSSQCSKPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA 
        40        50        60        70        80        90    

>>NP_001001437 (OMIM: 609468) C-C motif chemokine 3-like  (93 aa)
 initn: 280 init1: 233 opt: 243  Z-score: 338.8  bits: 67.6 E(85289): 3.9e-12
Smith-Waterman score: 243; 48.3% identity (69.0% similar) in 87 aa overlap (27-109:6-90)

               10        20        30        40        50          
pF1KB6 MKVSVAALSCLMLVAVLGSQAQFTNDAETELMMSKLPLENPVVLNSFHFAAD----CCTS
                                 :   ...  . : : :.  :  .:::    :: :
NP_001                      MQVSTAALAVLLCTMALCNQVL--SAPLAADTPTACCFS
                                    10        20          30       

         60        70        80        90       100       110   
pF1KB6 YISQSIPCSLMKSYFETSSECSKPGVIFLTKKGRQVCAKPSGPGVQDCMKKLKPYSI
       : :..:: ... .::::::.::::.::::::.:::::: ::   ::  .. :.    
NP_001 YTSRQIPQNFIADYFETSSQCSKPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA 
        40        50        60        70        80        90    

>>NP_002974 (OMIM: 182283,609423) C-C motif chemokine 3   (92 aa)
 initn: 275 init1: 233 opt: 235  Z-score: 328.1  bits: 65.6 E(85289): 1.6e-11
Smith-Waterman score: 237; 42.2% identity (66.1% similar) in 109 aa overlap (1-109:1-89)

               10        20        30        40        50        60
pF1KB6 MKVSVAALSCLMLVAVLGSQAQFTNDAETELMMSKLPLENPVVLNSFHFAADCCTSYISQ
       :.::.:::. :. . .: .:  :.         ..:  ..:..         :: :: :.
NP_002 MQVSTAALAVLLCTMALCNQ--FS---------ASLAADTPTA---------CCFSYTSR
               10        20                   30                 40

               70        80        90       100       110   
pF1KB6 SIPCSLMKSYFETSSECSKPGVIFLTKKGRQVCAKPSGPGVQDCMKKLKPYSI
       .:: ... .::::::.:::::::::::..::::: ::   ::  .. :.    
NP_002 QIPQNFIADYFETSSQCSKPGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA 
               50        60        70        80        90   

>>NP_116739 (OMIM: 601392) C-C motif chemokine 14 isofor  (93 aa)
 initn: 273 init1: 216 opt: 220  Z-score: 307.8  bits: 61.9 E(85289): 2.1e-10
Smith-Waterman score: 237; 35.5% identity (67.3% similar) in 110 aa overlap (1-109:1-91)

               10         20        30        40        50         
pF1KB6 MKVSVAALSCLMLVAV-LGSQAQFTNDAETELMMSKLPLENPVVLNSFHFAADCCTSYIS
       ::.::::.  ..:... ::.... .         :. :         .:  ..:: .: .
NP_116 MKISVAAIPFFLLITIALGTKTESS---------SRGP---------YH-PSECCFTYTT
               10        20                          30         40 

      60        70        80        90       100       110   
pF1KB6 QSIPCSLMKSYFETSSECSKPGVIFLTKKGRQVCAKPSGPGVQDCMKKLKPYSI
        .:: . . .:.::.:.:::::..:.::.:..::..::   ::: .: .:    
NP_116 YKIPRQRIMDYYETNSQCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN  
              50        60        70        80        90     

>>NP_002979 (OMIM: 603757) C-C motif chemokine 18 precur  (89 aa)
 initn: 236 init1: 202 opt: 202  Z-score: 283.8  bits: 57.4 E(85289): 4.6e-09
Smith-Waterman score: 202; 50.9% identity (71.9% similar) in 57 aa overlap (53-109:30-86)

             30        40        50        60        70        80  
pF1KB6 FTNDAETELMMSKLPLENPVVLNSFHFAADCCTSYISQSIPCSLMKSYFETSSECSKPGV
                                     ::  : : .:: ... .: ::: .: ::::
NP_002  MKGLAAALLVLVCTMALCSCAQVGTNKELCCLVYTSWQIPQKFIVDYSETSPQCPKPGV
                10        20        30        40        50         

             90       100       110   
pF1KB6 IFLTKKGRQVCAKPSGPGVQDCMKKLKPYSI
       :.:::.:::.:: :.   ::  .. ::    
NP_002 ILLTKRGRQICADPNKKWVQKYISDLKLNA 
      60        70        80          

>>NP_996890 (OMIM: 603782) C-C motif chemokine 4-like pr  (92 aa)
 initn: 246 init1: 197 opt: 198  Z-score: 278.2  bits: 56.4 E(85289): 9.4e-09
Smith-Waterman score: 202; 37.6% identity (59.6% similar) in 109 aa overlap (1-109:1-90)

               10        20        30        40        50        60
pF1KB6 MKVSVAALSCLMLVAVLGSQAQFTNDAETELMMSKLPLENPVVLNSFHFAADCCTSYISQ
       ::. :..:: :.:::.      : . : .  : :  :               :: :: ..
NP_996 MKLCVTVLSLLVLVAA------FCSLALSAPMGSDPPTA-------------CCFSYTAR
               10              20        30                     40 

               70        80        90       100       110   
pF1KB6 SIPCSLMKSYFETSSECSKPGVIFLTKKGRQVCAKPSGPGVQDCMKKLKPYSI
       ..: ... .:.:::: ::.:.:.: ::.:.:::: ::   ::. .  :.    
NP_996 KLPRNFVVDYYETSSLCSQPAVVFQTKRGKQVCADPSESWVQEYVYDLELN  
              50        60        70        80        90    




113 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:51:09 2016 done: Fri Nov  4 23:51:09 2016
 Total Scan time:  3.760 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com