Result of FASTA (omim) for pF1KB6741
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6741, 98 aa
  1>>>pF1KB6741 98 - 98 aa - 98 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8262+/-0.0003; mu= 11.3340+/- 0.019
 mean_var=53.7689+/-10.722, 0's: 0 Z-trim(118.0): 70  B-trim: 508 in 1/49
 Lambda= 0.174908
 statistics sampled from 30536 (30606) to 30536 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.359), width:  16
 Scan time:  4.140

The best scores are:                                      opt bits E(85289)
NP_005399 (OMIM: 601391) C-C motif chemokine 13 pr (  98)  652 171.6 1.8e-43
NP_002973 (OMIM: 158105,182940,607948,609423) C-C  (  99)  449 120.4 4.7e-28
NP_005614 (OMIM: 602283) C-C motif chemokine 8 pre (  99)  431 115.9 1.1e-26
NP_006264 (OMIM: 158106) C-C motif chemokine 7 pre (  99)  422 113.6 5.3e-26
NP_002977 (OMIM: 600807,601156,609423) eotaxin pre (  97)  406 109.5 8.6e-25
NP_066286 (OMIM: 601395,609423) C-C motif chemokin (  93)  272 75.7 1.2e-14
NP_001001437 (OMIM: 609468) C-C motif chemokine 3- (  93)  272 75.7 1.2e-14
NP_996890 (OMIM: 603782) C-C motif chemokine 4-lik (  92)  270 75.2 1.8e-14
NP_002975 (OMIM: 182284) C-C motif chemokine 4 pre (  92)  265 74.0 4.2e-14
NP_002974 (OMIM: 182283,609423) C-C motif chemokin (  92)  240 67.6 3.3e-12
NP_116739 (OMIM: 601392) C-C motif chemokine 14 is (  93)  236 66.6 6.8e-12
NP_001278397 (OMIM: 610757) C-C motif chemokine 4- (  87)  233 65.9 1.1e-11
XP_011514761 (OMIM: 602495) PREDICTED: C-C motif c ( 119)  222 63.2 9.7e-11
XP_011514762 (OMIM: 602495) PREDICTED: C-C motif c ( 119)  222 63.2 9.7e-11
NP_002982 (OMIM: 602495) C-C motif chemokine 24 pr ( 119)  222 63.2 9.7e-11
NP_116738 (OMIM: 601392) C-C motif chemokine 14 is ( 109)  218 62.1 1.8e-10
NP_006063 (OMIM: 604697) C-C motif chemokine 26 pr (  94)  216 61.6 2.3e-10
XP_016867161 (OMIM: 604697) PREDICTED: C-C motif c (  94)  216 61.6 2.3e-10
NP_002976 (OMIM: 187011) C-C motif chemokine 5 iso (  91)  215 61.3 2.6e-10
XP_016867160 (OMIM: 604697) PREDICTED: C-C motif c ( 148)  216 61.7 3.3e-10
NP_002972 (OMIM: 182281) C-C motif chemokine 1 pre (  96)  193 55.8 1.3e-08
NP_004581 (OMIM: 601394) C-C motif chemokine 16 pr ( 120)  190 55.1 2.6e-08
XP_005258077 (OMIM: 601394) PREDICTED: C-C motif c ( 120)  190 55.1 2.6e-08
NP_002979 (OMIM: 603757) C-C motif chemokine 18 pr (  89)  188 54.5 2.9e-08
NP_002978 (OMIM: 601520) C-C motif chemokine 17 pr (  94)  173 50.7 4.2e-07
XP_011521558 (OMIM: 601520) PREDICTED: C-C motif c ( 122)  173 50.8 5.2e-07
XP_016879019 (OMIM: 601520) PREDICTED: C-C motif c ( 123)  173 50.8 5.2e-07
NP_002981 (OMIM: 602957) C-C motif chemokine 22 pr (  93)  171 50.2 5.9e-07
XP_016879020 (OMIM: 602957) PREDICTED: C-C motif c (  93)  171 50.2 5.9e-07
NP_116741 (OMIM: 601393) C-C motif chemokine 15 pr ( 113)  168 49.5 1.2e-06
NP_005055 (OMIM: 602494) C-C motif chemokine 23 is ( 137)  167 49.3 1.6e-06
XP_011508167 (OMIM: 600250) PREDICTED: lymphotacti ( 114)  166 49.0 1.7e-06
NP_002986 (OMIM: 600250) lymphotactin precursor [H ( 114)  166 49.0 1.7e-06
NP_003166 (OMIM: 604828) cytokine SCM-1 beta precu ( 114)  166 49.0 1.7e-06
NP_001278400 (OMIM: 610757) C-C motif chemokine 4- ( 103)  164 48.5 2.2e-06
NP_002980 (OMIM: 602737) C-C motif chemokine 21 pr ( 134)  165 48.8 2.3e-06
XP_011516306 (OMIM: 602737) PREDICTED: C-C motif c ( 145)  165 48.8 2.4e-06
NP_665905 (OMIM: 602494) C-C motif chemokine 23 is ( 120)  163 48.3 2.9e-06
NP_002987 (OMIM: 601880) fractalkine isoform 1 pre ( 397)  165 49.0 5.7e-06
NP_001278401 (OMIM: 610757) C-C motif chemokine 4- (  96)  155 46.2 9.9e-06
NP_001278398 (OMIM: 610757) C-C motif chemokine 4- (  64)  153 45.6   1e-05
NP_001278399 (OMIM: 610757) C-C motif chemokine 4- (  64)  153 45.6   1e-05
NP_001278402 (OMIM: 610757) C-C motif chemokine 4- (  86)  153 45.7 1.3e-05
NP_001278404 (OMIM: 610757) C-C motif chemokine 4- ( 103)  153 45.7 1.5e-05
NP_006265 (OMIM: 602227) C-C motif chemokine 19 pr (  98)  144 43.4 6.9e-05
NP_001265665 (OMIM: 187011) C-C motif chemokine 5  ( 154)  145 43.8 8.5e-05
NP_000575 (OMIM: 146930) interleukin-8 precursor [ (  99)  142 42.9 9.9e-05
NP_000600 (OMIM: 600835,609423) stromal cell-deriv (  93)  133 40.6 0.00045
NP_954637 (OMIM: 600835,609423) stromal cell-deriv (  89)  131 40.1 0.00062
NP_001029058 (OMIM: 600835,609423) stromal cell-de ( 119)  131 40.2 0.00079


>>NP_005399 (OMIM: 601391) C-C motif chemokine 13 precur  (98 aa)
 initn: 652 init1: 652 opt: 652  Z-score: 901.5  bits: 171.6 E(85289): 1.8e-43
Smith-Waterman score: 652; 100.0% identity (100.0% similar) in 98 aa overlap (1-98:1-98)

               10        20        30        40        50        60
pF1KB6 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTSRCPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTSRCPQ
               10        20        30        40        50        60

               70        80        90        
pF1KB6 KAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
       ::::::::::::::::::::::::::::::::::::::
NP_005 KAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
               70        80        90        

>>NP_002973 (OMIM: 158105,182940,607948,609423) C-C moti  (99 aa)
 initn: 267 init1: 259 opt: 449  Z-score: 624.6  bits: 120.4 E(85289): 4.7e-28
Smith-Waterman score: 449; 64.6% identity (89.9% similar) in 99 aa overlap (1-98:1-99)

               10        20        30        40        50          
pF1KB6 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYV-ITTSRCP
       :::::.::::::..:.: :::::::::.:.: :::..:...:::.::: ::  ::.:.::
NP_002 MKVSAALLCLLLIAATFIPQGLAQPDAINAPVTCCYNFTNRKISVQRLASYRRITSSKCP
               10        20        30        40        50        60

      60        70        80        90        
pF1KB6 QKAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
       ..::::.: ..::::::::.::::. : :: ....: ::
NP_002 KEAVIFKTIVAKEICADPKQKWVQDSMDHLDKQTQTPKT
               70        80        90         

>>NP_005614 (OMIM: 602283) C-C motif chemokine 8 precurs  (99 aa)
 initn: 429 init1: 245 opt: 431  Z-score: 600.1  bits: 115.9 E(85289): 1.1e-26
Smith-Waterman score: 431; 62.2% identity (88.8% similar) in 98 aa overlap (1-97:1-98)

               10        20        30        40        50          
pF1KB6 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYV-ITTSRCP
       :::::.:::::::.:.:.::::::::....: ::::.  ..:: .:::.::. ::. .::
NP_005 MKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLESYTRITNIQCP
               10        20        30        40        50        60

      60        70        80        90        
pF1KB6 QKAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
       ..::::.:: :::.::::::.::.. :::: .  ..:: 
NP_005 KEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP
               70        80        90         

>>NP_006264 (OMIM: 158106) C-C motif chemokine 7 precurs  (99 aa)
 initn: 420 init1: 231 opt: 422  Z-score: 587.8  bits: 113.6 E(85289): 5.3e-26
Smith-Waterman score: 422; 64.3% identity (85.7% similar) in 98 aa overlap (1-97:1-98)

               10        20        30        40        50          
pF1KB6 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTS-RCP
       ::.::.:::::: .:::.::::::: ..:. .:::. : .:::  :::.::  ::: .::
NP_006 MKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLESYRRTTSSHCP
               10        20        30        40        50        60

      60        70        80        90        
pF1KB6 QKAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
       ..::::.::: ::::::: .::::..:::: .:..: : 
NP_006 REAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL
               70        80        90         

>>NP_002977 (OMIM: 600807,601156,609423) eotaxin precurs  (97 aa)
 initn: 411 init1: 214 opt: 406  Z-score: 566.1  bits: 109.5 E(85289): 8.6e-25
Smith-Waterman score: 406; 64.3% identity (87.8% similar) in 98 aa overlap (1-97:1-96)

               10        20        30        40        50          
pF1KB6 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYV-ITTSRCP
       :::::.:: :::..:::.::::: : .  ::.::::.....:: ::::.::  ::...::
NP_002 MKVSAALLWLLLIAAAFSPQGLAGPAS--VPTTCCFNLANRKIPLQRLESYRRITSGKCP
               10        20          30        40        50        

      60        70        80        90        
pF1KB6 QKAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
       ::::::.:::.:.::::::.::::. ::.: .:. : : 
NP_002 QKAVIFKTKLAKDICADPKKKWVQDSMKYLDQKSPTPKP
       60        70        80        90       

>>NP_066286 (OMIM: 601395,609423) C-C motif chemokine 3-  (93 aa)
 initn: 285 init1: 263 opt: 272  Z-score: 383.6  bits: 75.7 E(85289): 1.2e-14
Smith-Waterman score: 272; 42.7% identity (76.4% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KB6 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTSRCPQ
       :.::.. : .:: : :.  : :. : : ..:..:::...:..:  . . .:  :.:.: .
NP_066 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
               10        20        30        40        50        60

               70        80        90        
pF1KB6 KAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
        .::: :: :...::::.:.:::.:.. :         
NP_066 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA     
               70        80        90        

>>NP_001001437 (OMIM: 609468) C-C motif chemokine 3-like  (93 aa)
 initn: 285 init1: 263 opt: 272  Z-score: 383.6  bits: 75.7 E(85289): 1.2e-14
Smith-Waterman score: 272; 42.7% identity (76.4% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KB6 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTSRCPQ
       :.::.. : .:: : :.  : :. : : ..:..:::...:..:  . . .:  :.:.: .
NP_001 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
               10        20        30        40        50        60

               70        80        90        
pF1KB6 KAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
        .::: :: :...::::.:.:::.:.. :         
NP_001 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA     
               70        80        90        

>>NP_996890 (OMIM: 603782) C-C motif chemokine 4-like pr  (92 aa)
 initn: 287 init1: 270 opt: 270  Z-score: 381.0  bits: 75.2 E(85289): 1.8e-14
Smith-Waterman score: 270; 41.6% identity (76.4% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KB6 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTSRCPQ
       ::. ...: ::...:::   .:. : . . :..:::.....:.  . . .:  :.: : :
NP_996 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
               10        20        30        40        50        60

               70        80        90        
pF1KB6 KAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
        ::.:.:: ::..::::.:.:::.:.  :         
NP_996 PAVVFQTKRGKQVCADPSESWVQEYVYDLELN      
               70        80        90        

>>NP_002975 (OMIM: 182284) C-C motif chemokine 4 precurs  (92 aa)
 initn: 289 init1: 265 opt: 265  Z-score: 374.2  bits: 74.0 E(85289): 4.2e-14
Smith-Waterman score: 265; 40.4% identity (76.4% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KB6 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTSRCPQ
       ::. ...: ::...:::   .:. : . . :..:::.....:.  . . .:  :.: : :
NP_002 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
               10        20        30        40        50        60

               70        80        90        
pF1KB6 KAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
        ::.:.:: .:..::::.:.:::.:.  :         
NP_002 PAVVFQTKRSKQVCADPSESWVQEYVYDLELN      
               70        80        90        

>>NP_002974 (OMIM: 182283,609423) C-C motif chemokine 3   (92 aa)
 initn: 244 init1: 196 opt: 240  Z-score: 340.1  bits: 67.6 E(85289): 3.3e-12
Smith-Waterman score: 240; 39.3% identity (75.3% similar) in 89 aa overlap (1-89:1-88)

               10        20        30        40        50        60
pF1KB6 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTSRCPQ
       :.::.. : .:: : :.  : ..   : ..:..:::...:..:  . . .:  :.:.: .
NP_002 MQVSTAALAVLLCTMALCNQ-FSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
               10        20         30        40        50         

               70        80        90        
pF1KB6 KAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
        .::: :: ....::::.:.:::.:.. :         
NP_002 PGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA     
      60        70        80        90       




98 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:43:40 2016 done: Fri Nov  4 23:43:41 2016
 Total Scan time:  4.140 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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