GENSCAN 1.0	Date run:  5-Nov-116	Time: 00:34:25

Sequence gi568815580f:46005216_46228122 : 222907 bp : 43.48% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Term +  23157  23497  341  1  2   39   40   529 0.132  37.90
 1.02 PlyA +  25121  25126    6                               1.05

 2.05 PlyA -  25365  25360    6                               1.05
 2.04 Term -  34611  34593   19  2  1  107   54    20 0.806  -1.71
 2.03 Intr -  34832  34732  101  2  2  107  102   197 0.847  21.91
 2.02 Intr -  35253  35211   43  2  1   58   94    46 0.108   0.44
 2.01 Init -  41173  41079   95  1  2   71   20   109 0.088   2.26
 2.00 Prom -  53076  53037   40                              -5.46

 3.00 Prom +  55716  55755   40                              -4.46
 3.01 Init +  61314  61385   72  2  0   60  105    10 0.310   0.97
 3.02 Intr +  65721  65855  135  2  0   53   96    68 0.343   4.86
 3.03 Intr +  66635  66710   76  1  1  112   64    37 0.875   2.79
 3.04 Term +  67062  67318  257  1  2   89   36   161 0.821   6.75
 3.05 PlyA +  67787  67792    6                               1.05

 4.11 PlyA -  67976  67971    6                               1.05
 4.10 Term -  79148  79067   82  1  1   90   37    77 0.954  -0.03
 4.09 Intr -  79439  79289  151  0  1  101   80   139 0.999  13.62
 4.08 Intr -  81042  80898  145  0  1   79   87   112 0.969  10.06
 4.07 Intr -  82017  81793  225  0  0   86   67   212 0.985  17.08
 4.06 Intr -  82277  82126  152  0  2   48   48   212 0.999  13.08
 4.05 Intr -  83042  82894  149  1  2   59   67   148 0.999   9.68
 4.04 Intr -  84517  84351  167  1  2   83   38   223 0.998  15.56
 4.03 Intr -  84781  84608  174  1  0   81  100   235 0.999  24.14
 4.02 Intr -  86636  86467  170  0  2   77   94   105 0.189   9.67
 4.01 Init -  93016  92800  217  1  1   84   49   268 0.109  19.36
 4.00 Prom -  93217  93178   40                              -7.96

 5.00 Prom +  93710  93749   40                              -6.76
 5.01 Init +  99011  99064   54  1  0   43   98    49 0.872   2.69
 5.02 Intr +  99979 100153  175  0  1   66  100   142 0.469  12.71
 5.03 Intr + 117441 117490   50  1  2  100  111    -4 0.358   1.50
 5.04 Intr + 120529 120576   48  0  0   80   94    28 0.671   1.48
 5.05 Intr + 121123 121258  136  0  1   66   64    73 0.296   2.84
 5.06 Term + 152275 152564  290  2  2   87   55   100 0.290   2.14
 5.07 PlyA + 154480 154485    6                               1.05

 6.04 PlyA - 155883 155878    6                               1.05
 6.03 Term - 158818 158692  127  0  1   48   49   116 0.726   1.46
 6.02 Intr - 159327 159290   38  0  2  104  113    56 0.719   6.76
 6.01 Init - 160652 160605   48  2  0   70   58    38 0.366  -2.03
 6.00 Prom - 166588 166549   40                              -4.46

 7.02 PlyA - 167785 167780    6                               1.05
 7.01 Sngl - 168566 167985  582  2  0   22   41   454 0.554  30.28
 7.00 Prom - 192664 192625   40                              -2.56

 8.00 Prom + 198315 198354   40                              -4.26
 8.01 Init + 210672 211380  709  2  1   79   80   556 0.651  48.99
 8.02 Term + 215564 215628   65  0  2   75   42    31 0.352  -4.75
 8.03 PlyA + 217430 217435    6                               1.05

 9.02 PlyA - 218500 218495    6                               1.05
 9.01 Term - 221203 221127   77  2  2  106   32    98 0.826   4.00

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  23057  23497  441  1  0  -55   40   607 0.847  36.86
S.002 Term +  92688  93121  434  1  2   92   46   373 0.818  28.96


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815580f:46005216_46228122|GENSCAN_predicted_peptide_1|113_aa
XKTAGQAKRGEGRGETAPAAEPPDAGEDKPAVEWCLEELVFGDVEDDEDTLLRRLRGPWV
QGHEDLGDSEAENEAKGNCAPQKKPIWVDEEDEDEEMVDMMNNRFRKDNDEKC

>gi568815580f:46005216_46228122|GENSCAN_predicted_CDS_1|342_bp
ncgaaaaccgccggccaggccaagcgcggcgagggaagaggagagacggctccggcagcg
gaaccgcccgacgctggagaagacaaaccggccgtggagtggtgcctggaggagctggtc
ttcggcgatgtcgaggacgacgaggacacgctgctgcggcgtctgcggggtccgtgggtt
caaggacatgaagacttgggagactcagaagcggagaatgaagcaaaaggtaattgtgca
cctcaaaagaagccaatttgggtggatgaagaagatgaagatgaggaaatggttgacatg
atgaacaatcggtttcggaaagataatgatgaaaaatgctag

>gi568815580f:46005216_46228122|GENSCAN_predicted_peptide_2|85_aa
MRGTGWRCSTELDVRMLSSGTRNPVGGFGDCGLSKVNMTVISICYQSADILSTIGYDNII
QHLNNGRKNCKEFEDFLKERLWNDT

>gi568815580f:46005216_46228122|GENSCAN_predicted_CDS_2|258_bp
atgagaggaacgggctggagatgcagcacagaactagatgtgcggatgctcagcagcggg
acccgtaaccctgttggtggctttggagactgcggtctgtcgaaggtcaacatgactgtg
atcagcatttgttatcagagtgcagacatcctcagcaccatcggctatgacaacattatc
caacatctgaacaatggccgcaagaactgcaaagagtttgaagactttctaaaagaaagg
ttatggaatgatacctga

>gi568815580f:46005216_46228122|GENSCAN_predicted_peptide_3|179_aa
MEKKFLSSTSCCVFSVGHKVSHQKSLFPTVPAMGSPSPPFYLKNSQASRESHLWCPWFLC
EAATTLHPREHALLGARAAEGGPWSPSPRDSRARDSTSAFHTRAGKPPPGPKPLPIATAA
VGALRSLRETWAGPSALTRPGAAARTRTQAHLKPHSVGPRSIYQPEASCLLLEVFGYWK

>gi568815580f:46005216_46228122|GENSCAN_predicted_CDS_3|540_bp
atggagaagaagttcctctcttcaacaagttgctgtgttttctccgttggtcacaaggtc
tctcaccagaagagcctttttcccacagtgcctgccatgggatcccccagtcctccattc
tacctgaaaaactcgcaagcctcccgtgagagccatctgtggtgcccttggttcctctgt
gaggctgccaccaccctgcaccctagggagcacgcgctgctgggggcgcgggcggcagag
ggtgggccctggagtccgagcccccgggactcgcgggcacgcgactcaacttctgcgttc
cacactcgcgcagggaagccgcccccgggtcctaaaccactcccgattgcgacggccgcc
gtcggcgctctgcgctccctgcgcgagacctgggcgggaccctcggcgctcacccggcca
ggggctgcagcccgcacccggacccaggcccatttaaagccccacagcgtcgggccacga
tcaatatatcagcccgaagctagctgcctccttctggaagtctttgggtattggaaataa

>gi568815580f:46005216_46228122|GENSCAN_predicted_peptide_4|543_aa
MLSVRVAAAVVRALPRRAGLVSTEGRHDAGGRVGLQGGGAPARALSAGGRGAVANAAILH
PWLLRLDRAGDTGTAEMSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQAEE
MVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDAL
GNAIDGKGPIGSKTRRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDR
QTGKTSIAIDTIINQKRFNDGSDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIV
VSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGR
EAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQVA
GTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYA
GVRGYLDKLEPSKITKFENAFLSHVVSQHQALLGTIRADGKISEQSDAKLKEIVTNFLAG
FEA

>gi568815580f:46005216_46228122|GENSCAN_predicted_CDS_4|1632_bp
atgctgtccgtgcgcgttgctgcggccgtggtccgcgcccttcctcggcgggccggactg
gtgagcaccgaaggccggcatgatgcaggcggccgggtggggctgcagggtggtggtgcg
ccggctcgggcgctctctgcaggagggcgaggggctgtggcgaatgccgccatcttgcac
ccgtggcttctccggctggacagagcaggcgacacagggactgctgagatgtcctctatt
cttgaagagcgtattcttggagctgatacctctgttgatcttgaagaaactgggcgtgtc
ttaagtattggtgatggtattgcccgcgtacatgggctgaggaatgttcaagcagaagaa
atggtagagttttcttcaggcttaaagggtatgtccttgaacttggaacctgacaatgtt
ggtgttgtcgtgtttggaaatgataaactaattaaggaaggagatatagtgaagaggaca
ggagccattgtggacgttccagttggtgaggagctgttgggtcgtgtagttgatgccctt
ggtaatgctattgatggaaagggtccaattggttccaagacgcgtaggcgagttggtctg
aaagcccccggtatcattcctcgaatttcagtgcgggaaccaatgcagactggcattaag
gctgtggatagcttggtgccaattggtcgtggtcagcgtgaactgattattggtgaccga
cagactgggaaaacctcaattgctattgacacaatcattaaccagaaacgtttcaatgat
ggatctgatgaaaagaagaagctgtactgtatttatgttgctattggtcaaaagagatcc
actgttgcccagttggtgaagagacttacagatgcagatgccatgaagtacaccattgtg
gtgtcggctacggcctcggatgctgccccacttcagtacctggctccttactctggctgt
tccatgggagagtattttagagacaatggcaaacatgctttgatcatctatgacgactta
tccaaacaggctgttgcttaccgtcagatgtctctgttgctccgccgaccccctggtcgt
gaggcctatcctggtgatgtgttctacctacactcccggttgctggagagagcagccaaa
atgaacgatgcttttggtggtggctccttgactgctttgccagtcatagaaacacaggct
ggtgatgtgtctgcttacattccaacaaatgtcatttccatcactgacggacaggtagca
ggtaccatgaagctggaattggctcagtatcgtgaggttgctgcttttgcccagttcggt
tctgacctcgatgctgccactcaacaacttttgagtcgtggcgtgcgtctaactgagttg
ctgaagcaaggacagtattctcccatggctattgaagaacaagtggctgttatctatgcg
ggtgtaaggggatatcttgataaactggagcccagcaagattacaaagtttgagaatgct
ttcttgtctcatgtcgtcagccagcaccaagccttgttgggcactatcagggctgatgga
aagatctcagaacaatcagatgcaaagctgaaagagattgtaacaaatttcttggctgga
tttgaagcttaa

>gi568815580f:46005216_46228122|GENSCAN_predicted_peptide_5|250_aa
MPEPSTSLAQGLNGQESQVAAWLKKIFGDHPIPQYEVNPRTTEILHHLSERNRVRDRDVY
LVIEDLKQKASEYESEARHYYSLFTDERTIEKLNPSLAQVKIEEAKRELWKKGNILRDIE
YSRQKEFAKAYKLKHGGLTQAVASDKVRLLRNMKCLSTCNPECPRRETPGQVIPTGNCNN
DWRVNVDQGVSWGTIQKRRVRKKLQHKMEIRGKNEVSGAIIICLPDAHSKSICRDTGLKQ
RKRFNCSVTE

>gi568815580f:46005216_46228122|GENSCAN_predicted_CDS_5|753_bp
atgccagagccttcgaccagccttgcacaggggctcaacggccaggagtctcaggttgct
gcgtggttaaaaaaaatatttggagatcatcctattccacagtatgaggtgaacccacgg
accacagagattttacatcacctttcagaacgcaacagggtccgggacagggatgtctac
ctggtaatagaggacttgaagcagaaagcaagtgaatacgagtcagaagctaggcattat
tattccctttttacagatgagaggactatagagaagttgaatccgtctcttgctcaagtg
aaaattgaagaagcaaagcgagaactatggaaaaaggggaatatattgagagatatagaa
tattctaggcaaaaagaatttgcaaaggcatataagctgaaacatggaggacttactcaa
gctgtagcaagtgataaagtccggctgcttagaaacatgaaatgtttgtccacatgcaat
ccagagtgtcccaggagggaaaccccggggcaggtgatacctacaggcaactgcaacaat
gactggagggtaaatgtggaccaaggtgtgagctggggcaccatacaaaagagaagggtg
aggaagaagctgcagcacaaaatggagattagagggaaaaacgaggttagtggagccatc
atcatctgcttgcccgatgcacacagcaagtcaatatgccgagacaccgggttgaagcag
agaaagaggtttaactgtagtgtcactgaatga

>gi568815580f:46005216_46228122|GENSCAN_predicted_peptide_6|70_aa
MGFSMLVRLVLSSRPQVAVKAAIPPDTRRTGLNLETHHNSRGGRCRIGTCRMEKLIPKST
KDFLEEEAFD

>gi568815580f:46005216_46228122|GENSCAN_predicted_CDS_6|213_bp
atggggttctccatgttggtcaggctggtcttgagctcccgacctcaggtggcagtcaaa
gcggccattcccccagacaccagaagaacagggctcaacctagaaacacatcacaatagc
agagggggtcgatgcagaatagggacatgtcgcatggagaaattaattcccaagagcacc
aaggacttcttggaagaggaagcttttgactag

>gi568815580f:46005216_46228122|GENSCAN_predicted_peptide_7|193_aa
MQAKDNAFSKGQRSLFCALLSTHPLLKPFRKQLAVSESQSRSSGEPVPFSPRFFADADSW
ARGDSAELFSGSGTNICSSFCPGTLQALQIDRHLLVGRGPLGRPRSAPNSASAVALRFAV
SPGEGGGNEVDPNPEEGEEGAGPLAGGAFPKEEQEMLKTYLKTQDLAKDPRSPKAKQCFE
KKNNNNKALRRKM

>gi568815580f:46005216_46228122|GENSCAN_predicted_CDS_7|582_bp
atgcaagccaaggacaatgccttcagcaaaggacagcgctcccttttctgtgcgctgctc
agtactcaccccctcctgaagcccttccgaaagcagcttgcggtgtctgaatcccagagt
cgctccagcggagagcccgtgcccttctctccccgctttttcgcggatgccgatagctgg
gctcggggagactcggctgagctcttctcgggcagcggcaccaatatctgctcaagtttc
tgtccgggcaccttgcaggccttgcagatcgaccgccacctgctggtgggacgtggcccg
ctggggagaccccgctctgccccgaattccgcctctgcagtcgccctccgatttgcagtc
agccctggggagggtgggggaaacgaggtggacccgaaccccgaagaaggggaggagggc
gcaggcccactggcgggtggagcgtttcccaaggaggagcaggagatgctgaagacatat
ctcaagactcaagatctggccaaggacccgcgctcccccaaagcaaagcagtgttttgag
aagaaaaataataataataaagctttgaggaggaaaatgtaa

>gi568815580f:46005216_46228122|GENSCAN_predicted_peptide_8|257_aa
MEEAVGKVEELIESEAPPKASEQETAKEEDGSVELESQVQKDGVADSTVISSMPCLLMEL
RRDSSESQLASTESDKPTTGRVYESDSSNHCMLSPSSSGHLADSDTLSSAEENEPSQAET
AVEGDPSGVSGATVGRKSRRSRSESETSTMAAKKNRQSSDKQNGRVAKVKGHRSQKHKER
IRLLRQKREAAARKKYNLLQDSSTSDSDLTCDSSTSSSDDDEEVSGSSKTITAEIPGYEH
LRLLTTYCHTAILPYCF

>gi568815580f:46005216_46228122|GENSCAN_predicted_CDS_8|774_bp
atggaggaggcagtgggaaaagttgaagaactcattgagtccgaagccccaccaaaagca
tctgaacaagagacagccaaggaggaagatggatctgtagaactggaatctcaagttcag
aaagatggtgtagcggattctacagttatttcttcaatgccctgcttgttgatggaactg
agaagggactcttctgagtctcagttagcatccacagagagtgacaagcctacaactggc
cgagtttatgagagtgactcctctaatcactgcatgctttccccttcctctagtggtcac
ctggctgattcagatacgttgtcttccgcagaagagaatgaaccctctcaggcagaaacg
gcggtagaaggagacccttcaggagtgtctggtgccacagttgggcgcaagtctaggcgg
tcccgatctgaaagtgaaacttccactatggctgccaagaaaaaccggcaatccagtgat
aaacagaatggccgagtcgccaaggttaaaggtcatcggagccaaaagcacaaggagagg
atcaggctactgaggcagaaacgggaggctgctgcaaggaagaaatataacctgctgcag
gacagtagtaccagtgatagtgacctgacttgtgactcaagcacgagctcatcagatgat
gatgaagaggtttcagggagcagcaagacaatcactgcagagataccagggtatgaacac
ttaaggctcttgaccacatactgccatactgccatactgccatactgcttttaa

>gi568815580f:46005216_46228122|GENSCAN_predicted_peptide_9|25_aa
XILYNRVPEIPLADAYQIIALGTEL

>gi568815580f:46005216_46228122|GENSCAN_predicted_CDS_9|78_bp
ngtatcctttacaacagagtaccagaaattccactggctgatgcctaccagattattgcc
ttgggcactgagctttaa