GENSCAN 1.0	Date run:  3-Nov-116	Time: 03:15:22

Sequence gi568815576f:28681060_28886323 : 205264 bp : 45.40% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.12 PlyA -    727    722    6                              -0.45
 1.11 Term -   6927   6838   90  0  0   81   43    54 0.535  -2.08
 1.10 Intr -   8156   8076   81  2  0  105   66    59 0.680   5.23
 1.09 Intr -  15928  15842   87  1  0   44  116    17 0.444   0.27
 1.08 Intr -  18878  18779  100  1  1  118   98   102 0.977  14.31
 1.07 Intr -  22507  22446   62  1  2   94   87    68 0.964   4.83
 1.06 Intr -  29000  28947   54  2  0   74  103    48 0.942   4.08
 1.05 Intr -  30958  30850  109  0  1  105   92    74 0.999   9.79
 1.04 Intr -  38426  38336   91  0  1   97   94    26 0.959   3.15
 1.03 Intr -  44065  43918  148  1  1   55   85    43 0.742   0.51
 1.02 Intr -  44308  44184  125  2  2   88   73   124 0.752  11.20
 1.01 Init -  53662  53344  319  1  1   63   91   176 0.864  12.90
 1.00 Prom -  54065  54026   40                              -4.66

 2.00 Prom +  54520  54559   40                              -4.46
 2.01 Init +  61037  61272  236  1  2   50   72   130 0.496   3.21
 2.02 Intr +  62823  62919   97  0  1   84   70    64 0.719   4.21
 2.03 Intr +  63556  63645   90  0  0   59   61   125 0.992   7.09
 2.04 Intr +  64805  64949  145  1  1   79   62   172 0.683  13.56
 2.05 Term +  76019  76110   92  0  2  101   32    63 0.082  -0.12
 2.06 PlyA +  76135  76140    6                               1.05

 3.00 Prom +  80338  80377   40                              -5.36
 3.01 Init +  91791  91975  185  2  2   72   89   146 0.996  10.50
 3.02 Intr +  92666  92719   54  2  0   99   80    76 0.976   5.99
 3.03 Intr +  99889 100113  225  1  0   99   99   133 0.978  12.60
 3.04 Intr + 102449 102586  138  2  0   46   92   125 0.863   8.28
 3.05 Term + 102697 102730   34  1  1   90   50     8 0.386  -5.74
 3.06 PlyA + 102969 102974    6                               1.05

 4.05 PlyA - 104039 104034    6                               1.05
 4.04 Term - 114673 114116  558  1  0   88   49   167 0.909   7.15
 4.03 Intr - 116146 116018  129  1  0   76   94   112 0.941  11.49
 4.02 Intr - 118094 117998   97  1  1  123   83   123 0.909  15.31
 4.01 Init - 119465 119239  227  2  2   74   64   246 0.978  17.21
 4.00 Prom - 121748 121709   40                              -5.26

 5.00 Prom + 122073 122112   40                              -4.36
 5.01 Sngl + 145048 145371  324  0  0   87   32   136 0.654   3.90
 5.02 PlyA + 149434 149439    6                               1.05

 6.00 Prom + 150661 150700   40                              -4.86
 6.01 Init + 152954 153197  244  1  1  103   74    97 0.530   7.70
 6.02 Term + 155950 156083  134  2  2  100   38    75 0.529   1.95
 6.03 PlyA + 157689 157694    6                               1.05

 7.00 Prom + 161500 161539   40                              -6.36
 7.01 Init + 163334 163467  134  1  2   56   56   466 0.407  39.81
 7.02 Intr + 202704 203007  304  0  1  107   70   496 0.571  46.29

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815576f:28681060_28886323|GENSCAN_predicted_peptide_1|421_aa
MSRESDVEAQQSHGSSACSQPHGSVTQSQGSSSQSQGISSSSTSTMPNSSQSSHSSSGTL
SSLETVSTQELYSIPEDQEPEDQEPEEPTPAPWARLWALQDGFANLECVNDNYWFGRDKS
CEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNGTFVNTELVGKGKR
RPLNNNSEIALSLSRNKVFVFFDLTVDDQSVYPKALRDEYIMSKTLGSGACGEVKLAFER
KTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAEDYYIV
LELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEE
DCLIKDEDMKRKFQDLLSEENESTALPQVLAQPSTSRKRPREGEAEGAETTKRPAVCAAV
L

>gi568815576f:28681060_28886323|GENSCAN_predicted_CDS_1|1266_bp
atgtctcgggagtcggatgttgaggctcagcagtctcatggcagcagtgcctgttcacag
ccccatggcagcgttacccagtcccaaggctcctcctcacagtcccagggcatatccagc
tcctctaccagcacgatgccaaactccagccagtcctctcactccagctctgggacactg
agctccttagagacagtgtccactcaggaactctattctattcctgaggaccaagaacct
gaggaccaagaacctgaggagcctacccctgccccctgggctcgattatgggcccttcag
gatggatttgccaatcttgaatgtgtgaatgacaactactggtttgggagggacaaaagc
tgtgaatattgctttgatgaaccactgctgaaaagaacagataaataccgaacatacagc
aagaaacactttcggattttcagggaagtgggtcctaaaaactcttacattgcatacata
gaagatcacagtggcaatggaacctttgtaaatacagagcttgtagggaaaggaaaacgc
cgtcctttgaataacaattctgaaattgcactgtcactaagcagaaataaagtttttgtc
ttttttgatctgactgtagatgatcagtcagtttatcctaaggcattaagagatgaatac
atcatgtcaaaaactcttggaagtggtgcctgtggagaggtaaagctggctttcgagagg
aaaacatgtaagaaagtagccataaagatcatcagcaaaaggaagtttgctattggttca
gcaagagaggcagacccagctctcaatgttgaaacagaaatagaaattttgaaaaagcta
aatcatccttgcatcatcaagattaaaaacttttttgatgcagaagattattatattgtt
ttggaattgatggaagggggagagctgtttgacaaagtggtggggaataaacgcctgaaa
gaagctacctgcaagctctatttttaccagatgctcttggctgtgcagtaccttcatgaa
aacggtattatacaccgtgacttaaagccagagaatgttttactgtcatctcaagaagag
gactgtcttataaaggatgaagacatgaagagaaagtttcaagatcttctgtctgaggaa
aatgaatccacagctctaccccaggttctagcccagccttctactagtcgaaagcggccc
cgtgaaggggaagccgagggtgccgagaccacaaagcgcccagctgtgtgtgctgctgtg
ttgtga

>gi568815576f:28681060_28886323|GENSCAN_predicted_peptide_2|219_aa
MWRGRAGALLRVWGFWPTGVPRRRPLSCDAASQAGSNYPRCWNCGGPWGPGREDRFFCPQ
CRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKH
STLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESEAA
MKEIESIVKDDFEEAKEILTKMRYFSNIEEKIKLKKIPL

>gi568815576f:28681060_28886323|GENSCAN_predicted_CDS_2|660_bp
atgtggcgggggagagccggggctttgctccgggtgtgggggttttggccgacaggggtt
cccagaaggagaccgctaagctgcgatgctgcgtcgcaggcgggaagcaattatccccgc
tgttggaactgcggcggcccatggggccccgggcgggaggacaggttcttctgcccacag
tgccgagcgctgcaggcacctgaccccactcgagactacttcagccttatggactgcaac
cgttccttcagagttgatacagcgaagctccagcacaggtaccagcaactgcagcgtctt
gtccacccagatttcttcagccagaggtctcagactgaaaaggacttctcagagaagcat
tcgaccctggtgaatgatgcctataagaccctcctggcccccctgagcagaggactgtac
cttctaaagctccatggaatagagattcctgaaaggacagattatgaaatggacaggcaa
ttcctcatagaaataatggaaatcaatgaaaaactcgcagaagctgaaagtgaagctgcc
atgaaagagattgaatccattgtcaaagatgactttgaagaagccaaggaaattttgaca
aagatgagatacttttcaaatatagaagaaaagatcaagttaaagaagattcccctttaa

>gi568815576f:28681060_28886323|GENSCAN_predicted_peptide_3|211_aa
MAALGRPFSGLPLSGGSDFLQPPQPAFPGRAFPPGADGAELAPRPGPRAVPSSPAGSAAR
GRVSVHCKKKHKREEEEDDDCPVRKKRITEAELCAGPNDWILCAHQDVEGHGVNPSVSGL
SIPGILDVICEEMDQTTGEPQCEVARRKLQEIEDRIIDEDEEVEADRNVNHLPSLVLSDT
MKTGLKREFDEVFTKKMIESMQLEIGFFLVH

>gi568815576f:28681060_28886323|GENSCAN_predicted_CDS_3|636_bp
atggctgcgctcggccggcccttcagcggcctccctctgagcggcggctcggacttcctg
cagccgccgcagccggccttccccggccgggccttcccgccgggggctgacggcgccgag
ttggccccgcggccgggacctcgcgcagtccctagcagtcccgctgggagtgcggcgcgc
ggacgtgtttctgttcactgtaaaaagaaacacaagcgagaggaggaggaggatgatgat
tgtccagtaagaaagaaaaggataactgaagcagagctctgtgctggtcctaatgactgg
attctttgtgcacatcaggatgtagaggggcatggagtaaatcccagtgttagtggcctt
tccatacctgggatattagatgttatttgtgaagaaatggatcagacaactggagaacca
cagtgtgaagttgcccgaaggaagcttcaggagattgaggacaggataattgatgaagat
gaagaagttgaagctgacagaaatgttaaccatctccccagtcttgtcctttctgatacc
atgaaaacaggtttgaagagggaatttgatgaagtttttacaaagaaaatgattgagtct
atgcaattggagattggctttttcctagttcattag

>gi568815576f:28681060_28886323|GENSCAN_predicted_peptide_4|336_aa
MVVVAAAPNPADGTPKVLLLSGQPASAAGAPAGQALPLMVPAQRGASPEAASGGLPQARK
RQRLTHLSPEEKALRRKLKNRVAAQTARDRKKARMSELEQQVVDLEEENQKLLLENQLLR
EKTHGLVVENQELRQRLGMDALVAEEEAEAKSDILLGILDNLDPVMFFKCPSPEPASLEE
LPEVYPEGPSSLPASLSLSVGTSSAKLEAINELIRFDHIYTKPLVLEIPSETESQANVVV
KIEEAPLSPSENDHPEFIVSVKEEPVEDDLVPELGISNLLSSSHCPKPSSCLLDAYSDCG
YGGSLSPFSDMSSLLGVNHSWEDTFANELFPQLISV

>gi568815576f:28681060_28886323|GENSCAN_predicted_CDS_4|1011_bp
atggtggtggtggcagccgcgccgaacccggccgacgggacccctaaagttctgcttctg
tcggggcagcccgcctccgccgccggagccccggccggccaggccctgccgctcatggtg
ccagcccagagaggggccagcccggaggcagcgagcggggggctgccccaggcgcgcaag
cgacagcgcctcacgcacctgagccccgaggagaaggcgctgaggaggaaactgaaaaac
agagtagcagctcagactgccagagatcgaaagaaggctcgaatgagtgagctggaacag
caagtggtagatttagaagaagagaaccaaaaacttttgctagaaaatcagcttttacga
gagaaaactcatggccttgtagttgagaaccaggagttaagacagcgcttggggatggat
gccctggttgctgaagaggaggcggaagccaagtctgatatcctgttgggcattctggac
aacttggacccagtcatgttcttcaaatgcccttccccagagcctgccagcctggaggag
ctcccagaggtctacccagaaggacccagttccttaccagcctccctttctctgtcagtg
gggacgtcatcagccaagctggaagccattaatgaactaattcgttttgaccacatatat
accaagcccctagtcttagagataccctctgagacagagagccaagctaatgtggtagtg
aaaatcgaggaagcacctctcagcccctcagagaatgatcaccctgaattcattgtctca
gtgaaggaagaacctgtagaagatgacctcgttccggagctgggtatctcaaatctgctt
tcatccagccactgcccaaagccatcttcctgcctactggatgcttacagtgactgtgga
tacgggggttccctttccccattcagtgacatgtcctctctgcttggtgtaaaccattct
tgggaggacacttttgccaatgaactctttccccagctgattagtgtctaa

>gi568815576f:28681060_28886323|GENSCAN_predicted_peptide_5|107_aa
MDPFLTPYAKINSRWIKDLNVRPKTIKTLEENLGNTIQDIGMGKDFMSKTPKAMATKAKI
DKWDLIKLKSFCTAKETIIRVNRQPTEWEKIFTIYPSEKGLVSRIYK

>gi568815576f:28681060_28886323|GENSCAN_predicted_CDS_5|324_bp
atggatcccttccttacaccttatgcaaaaattaattctagatggattaaagacttaaat
gttagacctaaaaccataaaaaccctagaagaaaacctaggcaataccattcaggacata
ggcatgggcaaggacttcatgtctaaaacaccaaaagcaatggcaacaaaagccaaaatt
gacaaatgggatctaattaaactaaagagcttctgcacagcaaaagaaacgatcatcaga
gtgaacaggcaacctacagaatgggagaaaatttttacaatctacccatctgaaaaaggg
ctagtatccagaatctacaaataa

>gi568815576f:28681060_28886323|GENSCAN_predicted_peptide_6|125_aa
MPSVIGFSTGPAKELCEGDTLDRAYFLALGTDPWSSDAHLKSGLSCPHGMRNVSRQKGLD
LWGLLPFIPFILGEGPCQPPRNGFLHLAWENGKQLHLTLSLQLMILDEVKPPVSQFPYIK
PQRSL

>gi568815576f:28681060_28886323|GENSCAN_predicted_CDS_6|378_bp
atgcccagtgtcattggcttttctacaggacctgccaaagagctgtgtgaaggagatacc
ttagaccgagcatacttcctggccctgggcacagatccttggtcctcagacgcgcacttg
aagtccggcctcagctgcccacatgggatgaggaatgtgtcccgtcagaaaggtctagat
ctctgggggctactgccatttatcccttttattctgggagaaggtccatgtcagccacca
cgaaatggcttcctccacctggcctgggaaaatggcaagcagctccaccttacactgtcc
ttacagcttatgatcttagacgaagtgaagccccctgtttcccagtttccttatatcaag
cctcagagaagtctttga

>gi568815576f:28681060_28886323|GENSCAN_predicted_peptide_7|146_aa
MKKKKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEQAMTMRPRSGGRPGATGR
RRRRLRRRPRGLRCSRLPPPPPLPLLLGLLLAAAGPGAARAKETAFVEVVLFESSPSGDY
TTYTTGLTGRFSRAGATLSAEGEIVQ

>gi568815576f:28681060_28886323|GENSCAN_predicted_CDS_7|438_bp
atgaagaagaagaaagaagaagaagaagaagaagaagaagaagaggaagaggaagaggaa
gaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaa
gaagaacaggccatgaccatgaggccgcgctcgggcgggcgcccaggggccacgggccgc
cgccgccgccgcctgcgccgccgcccccgcggcctccggtgcagccgcctgccgccgccg
ccgccgctgccgctgctgctcgggctgctgctggcggccgcggggcccggcgcggcgcgg
gccaaggagacggcgttcgtggaggtggtgctgttcgagtcgagcccaagcggcgattac
accacctacaccaccggcctcacgggccgcttctcgcgggccggggccacgctcagcgcc
gagggcgagatcgtgcag