GENSCAN 1.0	Date run:  4-Nov-116	Time: 20:32:16

Sequence gi568815597r:162274051_162476790 : 202740 bp : 43.09% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   8894   8941   48  1  0   81   94    18 0.818   2.66
 1.02 Intr +  13294  13386   93  0  0   95  115   112 0.763  14.76
 1.03 Intr +  26598  26656   59  2  2   87  110    72 0.435   6.98
 1.04 Intr +  58967  59075  109  2  1  100   98   107 0.941  13.19
 1.05 Intr +  69785  69926  142  1  1  117   96   166 0.973  20.23
 1.06 Intr +  80539  80562   24  2  0   98   77    30 0.580   0.90
 1.07 Intr +  81137  81303  167  0  2  124  102   139 0.995  18.58
 1.08 Intr +  82910  83086  177  1  0  138   17   156 0.869  13.62
 1.09 Intr +  91354  91519  166  0  1  141   74   222 0.999  25.63
 1.10 Term +  93002  93417  416  0  2  113   43   721 0.997  65.52
 1.11 PlyA +  94879  94884    6                               1.05

 2.05 PlyA -  96239  96234    6                               1.05
 2.04 Term - 100566  99998  569  1  2  108   44   674 0.652  59.58
 2.03 Intr - 100874 100683  192  0  0   68   28    86 0.324   0.06
 2.02 Intr - 101353 101240  114  2  0   76   94    35 0.832   3.32
 2.01 Init - 102740 102638  103  2  1   59   97    31 0.765   0.36
 2.00 Prom - 103731 103692   40                              -3.86

 3.00 Prom + 105221 105260   40                              -5.66
 3.01 Init + 106672 106681   10  0  1   78   65    21 0.469  -1.68
 3.02 Intr + 107841 108168  328  1  1  108  105   218 0.885  20.26
 3.03 Term + 109132 109633  502  1  1   73   43   229 0.902  10.85
 3.04 PlyA + 110729 110734    6                              -1.75

 4.07 PlyA - 112690 112685    6                              -0.45
 4.06 Term - 112864 112816   49  0  1  105   55    10 0.211  -3.82
 4.05 Intr - 113466 113336  131  0  2   98   99    49 0.224   6.49
 4.04 Intr - 116715 116518  198  0  0    5   23   155 0.091   0.25
 4.03 Intr - 125037 124957   81  0  0  121   -8    68 0.314   0.33
 4.02 Intr - 128752 128689   64  0  1   96  110    40 0.719   5.72
 4.01 Init - 137966 137833  134  2  2   54   80    97 0.620   5.12
 4.00 Prom - 141488 141449   40                              -3.56

 5.00 Prom + 154470 154509   40                              -4.06
 5.01 Init + 159368 159572  205  1  1   97   44   180 0.059  11.81
 5.02 Intr + 171589 171831  243  2  0   68   70   230 0.418  16.67
 5.03 Intr + 172699 172811  113  2  2  150   47    12 0.904   3.40
 5.04 Term + 175216 175479  264  0  0   64   37   275 0.916  15.51
 5.05 PlyA + 175563 175568    6                               1.05

 6.00 Prom + 176561 176600   40                              -4.96
 6.01 Sngl + 177464 178909 1446  1  0   74   43   545 0.850  42.34
 6.02 PlyA + 178961 178966    6                               1.05

 7.00 Prom + 179175 179214   40                             -10.55
 7.01 Sngl + 179331 179978  648  2  0   58   47   275 0.735  16.58
 7.02 PlyA + 180022 180027    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl + 159368 159697  330  1  0   97   44   201 0.870  10.92
S.002 Init + 170593 170641   49  0  1   99  113     9 0.910   3.87


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:162274051_162476790|GENSCAN_predicted_peptide_1|466_aa
MNFMVKNEGDLLPMKQYEFKAKNIKKKKVSIMVSVDGVKVILKKKKKKKEWTWDESKMLV
MQDPIYRIFYVSHDSQDLKIFSYIARDGASNIFRCNVFKSKKKSQAMRIVRTVGQAFEVC
HKLSLQHTQQNADGQEDGESERNSNSSGDPGVFLASAVGRQLTGAERASTATAEETDIDA
VEVPLPGNDVLEFSRGVTDLDAVGKEGGSHTGSKVSHPQEPMLTASPRMLLPSSSSKPPG
LGTETPLSTHHQMQLLQQLLQQQQQQTQVAVAQVHLLKDQLAAEAAARLEAQARVHQLLL
QNKDMLQHISLLVKQVQELELKLSGQNAMGSQDSLLEITFRSGALPVLCDPTTPKPEDLH
SPPLGAGLADFAHPAGSPLGRRDCLVKLECFRFLPPEDTPPPAQGEALLGGLELIKFRES
GIASEYESNTDESEERDSWSQEELPRLLNVLQRQELGDGLDDEIAV

>gi568815597r:162274051_162476790|GENSCAN_predicted_CDS_1|1401_bp
atgaattttatggttaagaatgagggagacctgcttcctatgaagcagtatgagtttaaa
gccaagaacatcaagaagaagaaagtgagcattatggtttcagtggatggagtgaaagtg
attctgaagaagaagaaaaagaaaaaggaatggacgtgggatgagagcaagatgctggtg
atgcaggaccccatctacaggatcttctatgtctctcatgattcccaagacttgaagatc
ttcagctatatcgctcgagatggtgccagcaatatcttcaggtgtaacgtctttaaatcc
aagaagaagagccaagctatgagaatcgttcggacggtggggcaggcctttgaggtctgc
cacaagctgagcctgcagcacacgcagcagaatgcagatggccaggaagatggagagagc
gagaggaacagcaacagctcaggagacccaggcgtcttcctggcttctgctgttggccgc
cagctcactggagccgagagggcctccacggccactgcagaggagactgacatcgatgcg
gtggaggtcccacttccagggaatgatgtcctggaattcagccgaggtgtgactgatcta
gatgctgtagggaaggaaggaggctctcacacaggctccaaggtttcgcacccccaggag
cccatgctgacagcctcacccaggatgctgctcccttcttcttcctcgaagcctccaggc
ctgggcacagagacaccgctgtccactcaccaccagatgcagctcctccagcagctcctc
cagcagcagcagcagcagacacaagtggctgtggcccaggtacacttgctgaaggaccag
ttggctgctgaggctgcggcgcggctggaggcccaggctcgcgtgcatcagcttttgctg
cagaacaaggacatgctccagcacatctccctgctggtcaagcaggtgcaagagctggaa
ctgaagctgtcaggacagaacgccatgggctcccaggacagcttgctggagatcaccttc
cgctccggagccctgcccgtgctctgtgaccccacgacccctaagccagaggacctgcat
tcgccgccgctgggcgcgggcttggctgactttgcccaccctgcgggcagccccttaggt
aggcgcgactgcttggtgaagctggagtgctttcgctttcttccgcccgaggacaccccg
cccccagcgcagggcgaggcgctcctgggcggtctggagctcatcaagttccgagagtca
ggcatcgcctcggagtacgagtccaacacggacgagagcgaggagcgcgactcgtggtcc
caggaggagctgccgcgcctgctgaatgtcctgcagaggcaggaactgggcgacggcctg
gatgatgagatcgccgtgtag

>gi568815597r:162274051_162476790|GENSCAN_predicted_peptide_2|325_aa
MENFSLLSISGPPISSSALSAFPDIMFSRATSLPDIAKTAVPTEASSPAQALPPQYQSII
VRQGIQNTALSPEESVDMVSPGGEGLDKYQGLPTKSSLSCPKIQRPFVPLEKECSEKECP
RLLLPLSCVCSQNCNRDCSLGDTQHGEKLRRNCTIYRPWFSPYSYFVCADKESQLEAYDF
PEVQQDEGKWDNCLSEDMAENICSSSSSPENTCPREATKKSRHGLDSITSQDILMASRWH
PAQQNGYKCVACCRMYPTLDFLKSHIKRGFREGFSCKVYYRKLKALWSKEQKARLGDRLS
SGSCQAFNSPAEHLRQIGGEAYLCL

>gi568815597r:162274051_162476790|GENSCAN_predicted_CDS_2|978_bp
atggagaacttctcactcctcagcatctctggacctccaatctcttcctccgccctgagt
gcttttcccgacattatgttctctcgtgccaccagcctgccagacattgcaaagacagca
gtacccactgaggcatccagcccagctcaggccctgccaccccagtaccaaagcatcatt
gtcaggcaagggatacagaacacagcgctctcaccagaggagtcagtggacatggtgtct
ccaggaggggaaggcctcgacaaataccaaggcttaccaactaaaagcagcctctcctgc
cccaagatccaacggccctttgtacccctagaaaaagaatgcagtgagaaggaatgccct
cggctgctcttaccactgtcttgcgtctgctctcagaactgcaatcgtgactgcagcttg
ggggatacccagcacggagagaagctgaggcggaactgcactatctaccggccctggttc
tccccctacagctacttcgtgtgtgcagacaaagagagccagctggaggcctatgacttc
ccagaggtgcagcaggatgagggcaagtgggacaactgcctttctgaggacatggctgag
aacatctgttcgtcctcttcctccccagagaacacttgccctcgagaagccaccaagaaa
tccaggcatggcctggactccatcacatcccaggacatcctaatggcttccaggtggcac
ccagcacagcagaatggctacaagtgcgtggcctgctgccgcatgtaccccaccctggac
ttcctcaagagccacatcaagaggggcttcagggagggcttcagctgcaaggtgtactac
cgcaagctcaaagccctctggagcaaggagcagaaggcccggctgggagacaggctctcc
tccggcagctgccaggccttcaatagtcctgctgaacaccttaggcaaattggcggtgaa
gcctacttatgtctctag

>gi568815597r:162274051_162476790|GENSCAN_predicted_peptide_3|279_aa
MAKFDHGMFENLNTALTPKLQASRSFPHLSKPVAPGSAPLGSGEPGGPGLWVGSSQHLKN
LGKAMGAKVNDFLRRKEPSSLGSVGVTEINKTAGAQLASGTDAAPEAWLEDERSVLQETF
PRLDPPPPITRKRTPRALKTTQDMLISSQPVLSSLEYGTEPSPGQAQDSAPTAQPDVPAD
ASQPEATMEREERGKVLPNGEVSLSVPDLIHKDSQDESKLKMTECRRASSPSLIERNGFK
LSLSPISLAESWEDGSPPPQARTSSLDNEGPHPDLLSFE

>gi568815597r:162274051_162476790|GENSCAN_predicted_CDS_3|840_bp
atggccaagtttgaccacggcatgtttgagaatttgaacacagccctcactccaaagctc
caggccagccgctccttcccccacttgtccaagcccgtggcccccggctctgcccctctg
ggctctggtgagcctggggggccaggactctgggtgggcagcagccagcacctcaagaac
ctgggcaaagccatgggggccaaagtgaatgacttcctgaggagaaaggagccctccagc
ctgggcagtgtgggtgtgacagagatcaacaagactgcaggagcacagctggccagtggg
actgacgcggctccagaggcttggctagaggatgaaaggtcagtcctgcaagaaacattt
cctcggctggatcctccacctcccataaccagaaagcgaacccctcgggccctgaagacc
acccaggacatgctgatttcatcacagcctgtcctcagcagtctggagtatgggacagag
ccatcacctgggcaggcccaggactccgctcccactgcccagcctgacgtcccagcagac
gcttcacagccagaggccaccatggaaagagaagagagaggcaaagttctgcccaatgga
gaggtttccctgtcagtacctgacctaatccacaaggatagccaggacgaatccaagcta
aagatgactgagtgcagaagggcctcctcccccagccttatcgagaggaatggcttcaaa
ctcagcttgagccccatcagcctggctgagtcctgggaggatggcagcccccctcctcag
gcacggacctccagcctcgacaatgagggccctcacccagacctgctgtcctttgaatag

>gi568815597r:162274051_162476790|GENSCAN_predicted_peptide_4|218_aa
MDLPYYHGRLTKQDCETLLLKEGVDGNFLLRDSESIPGVLCLCVSFKNIVYTYRIFREKH
GYYRIQTAEGSPKQVFPSLKELISKFEKPNQGMCIFIELLQYARHCAGNRGVRDEDGMVP
APELRDLGERSMRMKRLSMTHGEYRDGGTHRMLRERREGEDKGLANSQLCGSSGSLDLTL
AQGQQRGKGTPGQLFSEPPSLRRLTKENANILQPTSQP

>gi568815597r:162274051_162476790|GENSCAN_predicted_CDS_4|657_bp
atggatctgccttactaccatggacgtctgaccaagcaagactgtgagaccttgctgctc
aaggaaggggtggatggcaactttcttttaagagacagcgagtcgataccaggagtcctg
tgcctctgtgtctcgtttaaaaatattgtctacacataccgaatcttcagagagaaacac
gggtattacaggatacagactgcagaaggttctccaaaacaggtctttccaagcctaaag
gaactgatctccaaatttgaaaaaccaaatcaggggatgtgcatctttatcgagctcctg
caatatgccagacactgtgctgggaaccgaggagtcagggatgaagatggcatggtccct
gcccctgagctcagagacctgggggagagaagcatgaggatgaagcgactttctatgaca
catggagagtaccgtgatggaggaacacataggatgctacgggaacgcagagaaggggag
gataaaggcctggccaattctcagctgtgtgggtcctctggatccttggatctgacactg
gcccaggggcagcaaaggggcaaagggactccaggccagctcttctctgagccaccttct
ctccgcaggcttacaaaggaaaatgccaacatacttcagccaacaagtcagccttga

>gi568815597r:162274051_162476790|GENSCAN_predicted_peptide_5|274_aa
MPEPSPASVGSCAAPASPTSAAPCSKAPSPTDHPRADECERMARDWQAAPPAAPVQDPLD
EASWAPESGERIQFITWLCNGTSFAFLEPYEGKSPKIYVTHPKWQKRLSFTQSYSPQLSN
LEMENIGFYSAQIATETSAKLSSYTLRIFSSKAAEGTYCPVKWIFLGNRLLLLVFLGVLR
TWHIQAQECSSSPAMEQSWMENDFDELREEGFRRSNYFELKEEVQTHGKEVKNLEKRLDE
LLTRITNAEKSLKDLKKLKTTARELRDKCTSFSS

>gi568815597r:162274051_162476790|GENSCAN_predicted_CDS_5|825_bp
atgcctgagccttcccccgcctccgtgggctcctgtgcagccccagcctccccgacgagc
gccgccccctgctccaaggcgcccagtcccaccgaccacccaagggctgatgagtgcgag
cgcatggcgcgggactggcaggcagctccacctgcagccccagtgcaggatccactggat
gaagccagctgggctcctgagtctggagagaggatccagttcatcacttggctttgcaat
ggaacatcttttgccttcctagaaccctatgaaggcaaaagtccaaaaatctacgtgact
catccgaaatggcaaaagcgactgagcttcacccagtcctactccccgcagctcagcaac
ctggagatggaaaacataggcttttacagtgcccagatagccacagagacctctgcaaag
ctgtccagttacactctgaggatattcagttccaaggcagctgaaggcacctattgccca
gtgaaatggattttcctggggaacaggcttcttctccttgtgttccttggtgtcctacga
acttggcatattcaggcacaggaatgcagctcctcaccagcaatggaacaaagctggatg
gagaatgactttgatgagttgagagaagaaggcttcagacgatcaaactactttgagcta
aaggaggaagttcaaacccatggcaaagaagttaaaaaccttgaaaaaagattagatgaa
ttgctaactagaataacaaatgcagagaagtccttaaaagacctgaagaagctgaaaacc
acagcacgagaactacgtgacaaatgcacaagcttcagtagctga

>gi568815597r:162274051_162476790|GENSCAN_predicted_peptide_6|481_aa
MGGRAEALLTSQTGLPGRGAPHFPDRAAGQRCSSLPRRGGQAEALLTSQTMGGWAIMGDF
NTPLSTLDRSRRQKVNKDIRELNSALHQADLIDIYRTLHPFSIHTECISTEYTFFSAPHS
TYSKIDHIVGSKALLSKCKRTEITTNCLLDHSAIKLGLRIKKLTQNRSTTWKLNNLLLND
YWVHNEMKAEIKMFFETKENKDTTYQNLWDTFKAVCRGKFIALNAHKRKQERSKIDTLTS
QLKELEKQEQTHSKASRRQEITKIRAELKEIETQKTLQKINESRNWFFEKINRIDRLLAR
LIKKKREKNQIDAIENDKGDITTNPTEIQTTIREYYKHLYANKLENLEEMDKFLDTYTLP
RLNQEEVESLNTPITGSEIEAIINSLPNKKCPGPEAFTAEFYQRYKKELVPFLLKVLQSI
EKEGILPISFYEASIILIPKSGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKAYP
P

>gi568815597r:162274051_162476790|GENSCAN_predicted_CDS_6|1446_bp
atgggcggccgggcagaggcgctcctcacctcccagacggggctgccgggcagaggcgct
cctcacttcccagacagggcagccgggcagaggtgctcctcacttcccagacggggcggc
caggcagaggcgctcctcacatcccagacgatgggtggctgggcaataatgggagacttt
aacaccccactgtcaacattagacagatcaaggagacagaaagttaacaaggatatccgg
gaattgaactcagctctgcaccaagcagacctaatagacatctacagaactctccaccca
ttctccatccatacagaatgtatatcaacagaatatacattcttctcagcaccacacagc
acttattccaaaattgaccacatagttggtagtaaagcactcctcagcaaatgtaaaaga
acagaaattacaacaaactgtctcttagaccacagtgcaatcaagctaggactcaggatt
aagaaactcactcaaaaccgctcaactacatggaaactgaacaaccttctcctgaatgac
tactgggtacataacgaaatgaaggcagaaataaagatgttctttgaaaccaaagagaac
aaagacacaacataccagaatctctgggacacattcaaagcagtgtgtagagggaaattt
atagcactaaatgcccacaagagaaagcaggaaagatctaaaattgacaccctaacatca
caattaaaagaactagagaagcaagagcaaacacattcaaaagctagcagaaggcaagaa
ataactaagatcagagcagaactgaaggaaatagagacacaaaaaacccttcaaaaaatc
aatgaatccaggaactggtttttcgaaaagatcaacagaattgatagactgctagcaaga
ctaataaagaagaaaagagagaagaatcaaatagatgcaatagaaaatgataaaggggat
atcaccaccaatcccacagaaatacaaactaccatcagagaatactataaacacctctac
gcaaataaacttgaaaatctagaagaaatggataaattcctcgacacatacaccctccca
agactaaaccaggaagaagttgaatctctgaatacaccaataacaggctctgaaattgag
gcaataattaatagcctaccaaacaaaaaatgtccaggaccagaagcattcacagccgaa
ttctaccagaggtacaagaaggagctggtaccattccttctgaaagtattacaatcaata
gaaaaagagggaatcctccctatctcattttatgaggccagcatcatcctgataccaaag
tcaggcagagacacaacaaaaaaagagaattttagaccaatatccctgatgaacatcgat
gcaaaaatcctcaataaaatactggcaaaccgaatccagcagcacatcaaagcttatcca
ccatga

>gi568815597r:162274051_162476790|GENSCAN_predicted_peptide_7|215_aa
MIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQPFLYTNNRQTESQIMSELPFTIAS
KRIKYLGIQLTRDVKDLFKENYKPLLNEIKEDTNKWKNIPCSWIGRINIVEMAILPKVIY
RFNAIPIKIPMTFFTELEKTTLKFIWNQKRARIAKSILSQKNKAGGITLPDFKLYYKPTV
TKTAWYWYQNRDTDQWNRTESSEINNATYLQLSDL

>gi568815597r:162274051_162476790|GENSCAN_predicted_CDS_7|648_bp
atgattgtatatctagaaaaccccatcgtctcagcccaaaatctccttaagctgataagc
aacttcagcaaagtctcaggatacaaaatcaatgtgcaaaaatcacaaccattcttatac
accaacaacagacaaacagagagccaaatcatgagtgaactcccattcacaattgcttca
aagagaataaaatacctaggaatccaacttacaagggatgtgaaggacctcttcaaggag
aactacaaaccactgctcaacgaaataaaagaggatacaaacaaatggaagaacattcca
tgctcatggataggaagaatcaatatcgtggaaatggccatactgcccaaggtaatttat
agattcaatgccatccccatcaagataccaatgactttcttcacagaattggaaaaaact
actttaaagttcatatggaaccaaaaaagagcccgcattgccaagtcaatcctaagccaa
aagaacaaagctggaggcatcacactacctgacttcaaactatactacaagcctacagta
accaaaacagcatggtactggtaccaaaacagagatacagaccaatggaacagaacagag
tcctcagaaataaataatgccacatatctacaactatctgatctttga