Result of FASTA (omim) for pF1KB6463
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6463, 322 aa
  1>>>pF1KB6463 322 - 322 aa - 322 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8707+/-0.000324; mu= 10.5518+/- 0.020
 mean_var=149.4150+/-30.058, 0's: 0 Z-trim(120.8): 6  B-trim: 1309 in 2/54
 Lambda= 0.104925
 statistics sampled from 36541 (36558) to 36541 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.766), E-opt: 0.2 (0.429), width:  16
 Scan time:  8.280

The best scores are:                                      opt bits E(85289)
NP_057651 (OMIM: 611883) BRCA2 and CDKN1A-interact ( 322) 2108 330.2 3.5e-90
NP_510869 (OMIM: 611883) BRCA2 and CDKN1A-interact ( 292) 1883 296.1 5.8e-80
NP_510868 (OMIM: 611883) BRCA2 and CDKN1A-interact ( 314) 1695 267.7 2.3e-71


>>NP_057651 (OMIM: 611883) BRCA2 and CDKN1A-interacting   (322 aa)
 initn: 2108 init1: 2108 opt: 2108  Z-score: 1740.1  bits: 330.2 E(85289): 3.5e-90
Smith-Waterman score: 2108; 100.0% identity (100.0% similar) in 322 aa overlap (1-322:1-322)

               10        20        30        40        50        60
pF1KB6 MASRSKRRAVESGVPQPPDPPVQRDEEEEKEVENEDEDDDDSDKEKDEEDEVIDEEVNIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MASRSKRRAVESGVPQPPDPPVQRDEEEEKEVENEDEDDDDSDKEKDEEDEVIDEEVNIE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 FEAYSLSDNDYDGIKKLLQQLFLKAPVNTAELTDLLIQQNHIGSVIKQTDVSEDSNDDMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 FEAYSLSDNDYDGIKKLLQQLFLKAPVNTAELTDLLIQQNHIGSVIKQTDVSEDSNDDMD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EDEVFGFISLLNLTERKGTQCVEQIQELVLRFCEKNCEKSMVEQLDKFLNDTTKPVGLLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 EDEVFGFISLLNLTERKGTQCVEQIQELVLRFCEKNCEKSMVEQLDKFLNDTTKPVGLLL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SERFINVPPQIALPMYQQLQKELAGAHRTNKPCGKCYFYLLISKTFVEAGKNNSKKKPSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 SERFINVPPQIALPMYQQLQKELAGAHRTNKPCGKCYFYLLISKTFVEAGKNNSKKKPSN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 KKKAALMFANAEEEFFYEEQGKPEVLGGPDTRRGLEPVPIQHNGGSRGQVTALVSLKAGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 KKKAALMFANAEEEFFYEEQGKPEVLGGPDTRRGLEPVPIQHNGGSRGQVTALVSLKAGL
              250       260       270       280       290       300

              310       320  
pF1KB6 IQSRSTLSDFQGTFMTVGIALS
       ::::::::::::::::::::::
NP_057 IQSRSTLSDFQGTFMTVGIALS
              310       320  

>>NP_510869 (OMIM: 611883) BRCA2 and CDKN1A-interacting   (292 aa)
 initn: 2183 init1: 1883 opt: 1883  Z-score: 1556.5  bits: 296.1 E(85289): 5.8e-80
Smith-Waterman score: 1883; 99.7% identity (99.7% similar) in 286 aa overlap (1-286:1-286)

               10        20        30        40        50        60
pF1KB6 MASRSKRRAVESGVPQPPDPPVQRDEEEEKEVENEDEDDDDSDKEKDEEDEVIDEEVNIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_510 MASRSKRRAVESGVPQPPDPPVQRDEEEEKEVENEDEDDDDSDKEKDEEDEVIDEEVNIE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 FEAYSLSDNDYDGIKKLLQQLFLKAPVNTAELTDLLIQQNHIGSVIKQTDVSEDSNDDMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_510 FEAYSLSDNDYDGIKKLLQQLFLKAPVNTAELTDLLIQQNHIGSVIKQTDVSEDSNDDMD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EDEVFGFISLLNLTERKGTQCVEQIQELVLRFCEKNCEKSMVEQLDKFLNDTTKPVGLLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_510 EDEVFGFISLLNLTERKGTQCVEQIQELVLRFCEKNCEKSMVEQLDKFLNDTTKPVGLLL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SERFINVPPQIALPMYQQLQKELAGAHRTNKPCGKCYFYLLISKTFVEAGKNNSKKKPSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_510 SERFINVPPQIALPMYQQLQKELAGAHRTNKPCGKCYFYLLISKTFVEAGKNNSKKKPSN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 KKKAALMFANAEEEFFYEEQGKPEVLGGPDTRRGLEPVPIQHNGGSRGQVTALVSLKAGL
       :::::::::::::::::::::::::::::::::::::::::::: :              
NP_510 KKKAALMFANAEEEFFYEEQGKPEVLGGPDTRRGLEPVPIQHNGWSVPPVLE        
              250       260       270       280       290          

              310       320  
pF1KB6 IQSRSTLSDFQGTFMTVGIALS

>>NP_510868 (OMIM: 611883) BRCA2 and CDKN1A-interacting   (314 aa)
 initn: 1995 init1: 1695 opt: 1695  Z-score: 1402.3  bits: 267.7 E(85289): 2.3e-71
Smith-Waterman score: 1695; 99.6% identity (100.0% similar) in 259 aa overlap (1-259:1-259)

               10        20        30        40        50        60
pF1KB6 MASRSKRRAVESGVPQPPDPPVQRDEEEEKEVENEDEDDDDSDKEKDEEDEVIDEEVNIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_510 MASRSKRRAVESGVPQPPDPPVQRDEEEEKEVENEDEDDDDSDKEKDEEDEVIDEEVNIE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 FEAYSLSDNDYDGIKKLLQQLFLKAPVNTAELTDLLIQQNHIGSVIKQTDVSEDSNDDMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_510 FEAYSLSDNDYDGIKKLLQQLFLKAPVNTAELTDLLIQQNHIGSVIKQTDVSEDSNDDMD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EDEVFGFISLLNLTERKGTQCVEQIQELVLRFCEKNCEKSMVEQLDKFLNDTTKPVGLLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_510 EDEVFGFISLLNLTERKGTQCVEQIQELVLRFCEKNCEKSMVEQLDKFLNDTTKPVGLLL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SERFINVPPQIALPMYQQLQKELAGAHRTNKPCGKCYFYLLISKTFVEAGKNNSKKKPSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_510 SERFINVPPQIALPMYQQLQKELAGAHRTNKPCGKCYFYLLISKTFVEAGKNNSKKKPSN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 KKKAALMFANAEEEFFYEEQGKPEVLGGPDTRRGLEPVPIQHNGGSRGQVTALVSLKAGL
       ::::::::::::::::::.                                         
NP_510 KKKAALMFANAEEEFFYEKAILKFNYSVQEESDTCLGGKWSFDDVPMTPLRTVMLIPGDK
              250       260       270       280       290       300




322 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:04:42 2016 done: Fri Nov  4 23:04:44 2016
 Total Scan time:  8.280 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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