Result of FASTA (ccds) for
pF1KB6132
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6132, 628 aa
1>>>pF1KB6132 628 - 628 aa - 628 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7212+/-0.000833; mu= 14.0769+/- 0.050
mean_var=155.0316+/-31.421, 0's: 0 Z-trim(112.0): 89 B-trim: 62 in 2/53
Lambda= 0.103006
statistics sampled from 12733 (12832) to 12733 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.732), E-opt: 0.2 (0.394), width: 16
Scan time: 4.170
The best scores are: opt bits E(32554)
CCDS12644.1 BCAM gene_id:4059|Hs108|chr19 ( 628) 4242 642.6 4.6e-184
CCDS42575.1 BCAM gene_id:4059|Hs108|chr19 ( 588) 3952 599.5 4.1e-171
CCDS31690.1 MCAM gene_id:4162|Hs108|chr11 ( 646) 634 106.5 1.2e-22
>>CCDS12644.1 BCAM gene_id:4059|Hs108|chr19 (628 aa)
initn: 4242 init1: 4242 opt: 4242 Z-score: 3418.1 bits: 642.6 E(32554): 4.6e-184
Smith-Waterman score: 4242; 100.0% identity (100.0% similar) in 628 aa overlap (1-628:1-628)
10 20 30 40 50 60
pF1KB6 MEPPDAPAQARGAPRLLLLAVLLAAHPDAQAEVRLSVPPLVEVMRGKSVILDCTPTGTHD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MEPPDAPAQARGAPRLLLLAVLLAAHPDAQAEVRLSVPPLVEVMRGKSVILDCTPTGTHD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 HYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 HYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 RDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 PKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 YSLPEGRHGRLDSPTFHLTLHYPTEHVQFWVGSPSTPAGWVREGDTVQLLCRGDGSPSPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 YSLPEGRHGRLDSPTFHLTLHYPTEHVQFWVGSPSTPAGWVREGDTVQLLCRGDGSPSPE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 YTLFRLQDEQEEVLNVNLEGNLTLEGVTRGQSGTYGCRVEDYDAADDVQLSKTLELRVAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 YTLFRLQDEQEEVLNVNLEGNLTLEGVTRGQSGTYGCRVEDYDAADDVQLSKTLELRVAY
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 LDPLELSEGKVLSLPLNSSAVVNCSVHGLPTPALRWTKDSTPLGDGPMLSLSSITFDSNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LDPLELSEGKVLSLPLNSSAVVNCSVHGLPTPALRWTKDSTPLGDGPMLSLSSITFDSNG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB6 TYVCEASLPTVPVLSRTQNFTLLVQGSPELKTAEIEPKADGSWREGDEVTLICSARGHPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TYVCEASLPTVPVLSRTQNFTLLVQGSPELKTAEIEPKADGSWREGDEVTLICSARGHPD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB6 PKLSWSQLGGSPAEPIPGRQGWVSSSLTLKVTSALSRDGISCEASNPHGNKRHVFHFGTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PKLSWSQLGGSPAEPIPGRQGWVSSSLTLKVTSALSRDGISCEASNPHGNKRHVFHFGTV
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB6 SPQTSQAGVAVMAVAVSVGLLLLVVAVFYCVRRKGGPCCRQRREKGAPPPGEPGLSHSGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SPQTSQAGVAVMAVAVSVGLLLLVVAVFYCVRRKGGPCCRQRREKGAPPPGEPGLSHSGS
550 560 570 580 590 600
610 620
pF1KB6 EQPEQTGLLMGGASGGARGGSGGFGDEC
::::::::::::::::::::::::::::
CCDS12 EQPEQTGLLMGGASGGARGGSGGFGDEC
610 620
>>CCDS42575.1 BCAM gene_id:4059|Hs108|chr19 (588 aa)
initn: 3952 init1: 3952 opt: 3952 Z-score: 3185.5 bits: 599.5 E(32554): 4.1e-171
Smith-Waterman score: 3952; 100.0% identity (100.0% similar) in 588 aa overlap (1-588:1-588)
10 20 30 40 50 60
pF1KB6 MEPPDAPAQARGAPRLLLLAVLLAAHPDAQAEVRLSVPPLVEVMRGKSVILDCTPTGTHD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MEPPDAPAQARGAPRLLLLAVLLAAHPDAQAEVRLSVPPLVEVMRGKSVILDCTPTGTHD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 HYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 HYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 RDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 PKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 YSLPEGRHGRLDSPTFHLTLHYPTEHVQFWVGSPSTPAGWVREGDTVQLLCRGDGSPSPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 YSLPEGRHGRLDSPTFHLTLHYPTEHVQFWVGSPSTPAGWVREGDTVQLLCRGDGSPSPE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 YTLFRLQDEQEEVLNVNLEGNLTLEGVTRGQSGTYGCRVEDYDAADDVQLSKTLELRVAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 YTLFRLQDEQEEVLNVNLEGNLTLEGVTRGQSGTYGCRVEDYDAADDVQLSKTLELRVAY
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 LDPLELSEGKVLSLPLNSSAVVNCSVHGLPTPALRWTKDSTPLGDGPMLSLSSITFDSNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LDPLELSEGKVLSLPLNSSAVVNCSVHGLPTPALRWTKDSTPLGDGPMLSLSSITFDSNG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB6 TYVCEASLPTVPVLSRTQNFTLLVQGSPELKTAEIEPKADGSWREGDEVTLICSARGHPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TYVCEASLPTVPVLSRTQNFTLLVQGSPELKTAEIEPKADGSWREGDEVTLICSARGHPD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB6 PKLSWSQLGGSPAEPIPGRQGWVSSSLTLKVTSALSRDGISCEASNPHGNKRHVFHFGTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PKLSWSQLGGSPAEPIPGRQGWVSSSLTLKVTSALSRDGISCEASNPHGNKRHVFHFGTV
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB6 SPQTSQAGVAVMAVAVSVGLLLLVVAVFYCVRRKGGPCCRQRREKGAPPPGEPGLSHSGS
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SPQTSQAGVAVMAVAVSVGLLLLVVAVFYCVRRKGGPCCRQRREKGAP
550 560 570 580
610 620
pF1KB6 EQPEQTGLLMGGASGGARGGSGGFGDEC
>>CCDS31690.1 MCAM gene_id:4162|Hs108|chr11 (646 aa)
initn: 548 init1: 163 opt: 634 Z-score: 520.2 bits: 106.5 E(32554): 1.2e-22
Smith-Waterman score: 808; 30.0% identity (55.9% similar) in 676 aa overlap (12-627:2-640)
10 20 30 40 50
pF1KB6 MEPPDAPAQARGAPRLLLLAVLLAAH---P---DAQAEVRLSVPPLVEVMRGKSVILDCT
: :::. : :::: : . .:.. .: :::: :....: :
CCDS31 MGLPRLVC-AFLLAACCCCPRVAGVPGEAEQPAPELVEVEVGSTALLKCG
10 20 30 40
60 70 80 90 100
pF1KB6 PTGTHDHY-MLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPP--YQ--LDSQGR
. .. . ..:: :.. . : ... .:.: : :. :. : :
CCDS31 LSQSQGNLSHVDWF------------SVHKEKRTLIFRVRQGQGQSEPGEYEQRLSLQDR
50 60 70 80 90
110 120 130 140 150 160
pF1KB6 ---LVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSA
:.:... ::: ..: .. . : .: :. :: ... : . :
CCDS31 GATLALTQVTPQDERIFLC--QGKRPRSQEYRIQLRVYKAPEEPNIQVNPLGIPVNSKEP
100 110 120 130 140 150
170 180 190 200 210 220
pF1KB6 QEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRL
.:.::: .::: : :.. ::.::. :. : : ..:.:: :.::: .: : : .:
CCDS31 EEVATCVGRNGYPIPQVIWYKNGRPLK--EEKNRVHIQSSQTV-ESSGLYTLQSILKAQL
160 170 180 190 200 210
230 240 250 260 270 280
pF1KB6 RKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLHYPTEHVQFWVGSPSTPAGWVREGDT
:.:.::.:.: .: :: : : . .: . . ::::.: :. :.: ..:::
CCDS31 VKEDKDAQFYCELNYRLPSGNHMK-ESREVTVPVFYPTEKV--WL--EVEPVGMLKEGDR
220 230 240 250 260
290 300 310 320 330 340
pF1KB6 VQLLCRGDGSPSPEYTLFR----LQDEQEEVLNVNLEGNLTLEGVTRGQSGTYGCRVEDY
:.. : .::.: :.... . .. .::. : : : :.:: . . .:: : :. :
CCDS31 VEIRCLADGNPPPHFSISKQNPSTREAEEETTNDN--GVLVLEPARKEHSGRYECQGLDL
270 280 290 300 310 320
350 360 370 380 390 400
pF1KB6 DAADDVQLSKTLELRVAYLDPLELSEGKVLSLPLNSSAVVNCSVHGLPTPALRWTKDSTP
:. .. ::. :: : :.. ...: . .:: ...: ... ..: .. :
CCDS31 DTMISL-LSEPQELLVNYVSDVRVSPAAPERQE-GSSLTLTCEAESSQDLEFQWLREETG
330 340 350 360 370 380
410 420 430 440 450 460
pF1KB6 --LGDGPMLSLSSITFDSNGTYVCEASLPTVPVLSRTQNFTLLVQGSPELKTAEIEPKAD
: ::.:.: .. ...: : : ::.:..: :.::: .. . : : . : : :.
CCDS31 QVLERGPVLQLHDLKREAGGGYRCVASVPSIPGLNRTQLVNVAIFGPPWM--AFKERKV-
390 400 410 420 430 440
470 480 490 500 510
pF1KB6 GSW-REGDEVTLICSARGHPDPKLSWSQLG-GSPAEPIPGRQGWVSSSLTLKVTSALSRD
: .:. ..: : : ::: : .::. : .: . : : : :.:.. :: : .
CCDS31 --WVKENMVLNLSCEASGHPRPTISWNVNGTASEQDQDPQR---VLSTLNVLVTPELLET
450 460 470 480 490
520 530 540
pF1KB6 GISCEASNPHGNKRHVFHF--------------------GTVSPQTSQA-----------
:. : ::: :.. .. . .:.::.:
CCDS31 GVECTASNDLGKNTSILFLELVNLTTLTPDSNTTTGLSTSTASPHTRANSTSTERKLPEP
500 510 520 530 540 550
550 560 570 580 590 600
pF1KB6 ---GVAVMAVAVSVGLLLLVVAVFYCVRRKGG-PCCRQRREKGAPPPGEPG---LSHSGS
::...:: : . .: .. ::.: . .:: :: :. ... . ::.. . . ...
CCDS31 ESRGVVIVAVIVCILVLAVLGAVLYFLYKKGKLPCRRSGKQEITLPPSRKSELVVEVKSD
560 570 580 590 600 610
610 620
pF1KB6 EQPEQTGLLMGGASGGARGGSGGFGDEC
. ::. :::.: :.: . . : :..
CCDS31 KLPEEMGLLQG--SSGDKRAPGDQGEKYIDLRH
620 630 640
628 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 21:48:20 2016 done: Fri Nov 4 21:48:20 2016
Total Scan time: 4.170 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]