Result of FASTA (ccds) for pF1KB7341
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7341, 1844 aa
  1>>>pF1KB7341 1844 - 1844 aa - 1844 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9210+/-0.00109; mu= 13.1351+/- 0.066
 mean_var=138.7680+/-27.039, 0's: 0 Z-trim(106.9): 29  B-trim: 2 in 1/52
 Lambda= 0.108875
 statistics sampled from 9253 (9267) to 9253 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.619), E-opt: 0.2 (0.285), width:  16
 Scan time:  6.830

The best scores are:                                      opt bits E(32554)
CCDS11260.1 ATAD5 gene_id:79915|Hs108|chr17        (1844) 11910 1883.7       0


>>CCDS11260.1 ATAD5 gene_id:79915|Hs108|chr17             (1844 aa)
 initn: 11910 init1: 11910 opt: 11910  Z-score: 10108.5  bits: 1883.7 E(32554):    0
Smith-Waterman score: 11910; 100.0% identity (100.0% similar) in 1844 aa overlap (1-1844:1-1844)

               10        20        30        40        50        60
pF1KB7 MVGVLAMAAAAAPPPVKDCEIEPCKKRKKDDDTSTCKTITKYLSPLGKTRDRVFAPPKPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MVGVLAMAAAAAPPPVKDCEIEPCKKRKKDDDTSTCKTITKYLSPLGKTRDRVFAPPKPS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 NILDYFRKTSPTNEKTQLGKECKIKSPESVPVDSNKDCTTPLEMFSNVEFKKKRKRVNLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NILDYFRKTSPTNEKTQLGKECKIKSPESVPVDSNKDCTTPLEMFSNVEFKKKRKRVNLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 HQLNNIKTENEAPIEISSDDSKEDYSLNNDFVESSTSVLRYKKQVEVLAENIQDTKSQPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HQLNNIKTENEAPIEISSDDSKEDYSLNNDFVESSTSVLRYKKQVEVLAENIQDTKSQPN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 TMTSLQNSKKVNPKQGTTKNDFKKLRKRKCRDVVDLSESLPLAEELNLLKKDGKDTKQME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TMTSLQNSKKVNPKQGTTKNDFKKLRKRKCRDVVDLSESLPLAEELNLLKKDGKDTKQME
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 NTTSHANSRDNVTEAAQLNDSIITVSYEEFLKSHKENKVEEIPDSTMSICVPSETVDEIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NTTSHANSRDNVTEAAQLNDSIITVSYEEFLKSHKENKVEEIPDSTMSICVPSETVDEIV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 KSGYISESENSEISQQVRFKTVTVLAQVHPIPPKKTGKIPRIFLKQKQFEMENSLSDPEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KSGYISESENSEISQQVRFKTVTVLAQVHPIPPKKTGKIPRIFLKQKQFEMENSLSDPEN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 EQTVQKRKSNVVIQEEELELAVLEAGSSEAVKPKCTLEERQQFMKAFRQPASDALKNGVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EQTVQKRKSNVVIQEEELELAVLEAGSSEAVKPKCTLEERQQFMKAFRQPASDALKNGVK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 KSSDKQKDLNEKCLYEVGRDDNSKKIMENSGIQMVSKNGNLQLHTDKGSFLKEKNKKLKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KSSDKQKDLNEKCLYEVGRDDNSKKIMENSGIQMVSKNGNLQLHTDKGSFLKEKNKKLKK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB7 KNKKTLDTGAIPGKNREGNTQKKETTFFLKEKQYQNRMSLRQRKTEFFKSSTLFNNESLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KNKKTLDTGAIPGKNREGNTQKKETTFFLKEKQYQNRMSLRQRKTEFFKSSTLFNNESLV
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB7 YEDIANDDLLKVSSLCNNNKLSRKTSIPVKDIKLTQSKAESEASLLNVSTPKSTRRSGRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YEDIANDDLLKVSSLCNNNKLSRKTSIPVKDIKLTQSKAESEASLLNVSTPKSTRRSGRI
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB7 SSTPTTETIRGIDSDDVQDNSQLKASTQKAANLSEKHSLYTAELITVPFDSESPIRMKFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SSTPTTETIRGIDSDDVQDNSQLKASTQKAANLSEKHSLYTAELITVPFDSESPIRMKFT
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB7 RISTPKKSKKKSNKRSEKSEATDGGFTSQIRKASNTSKNISKAKQLIEKAKALHISRSKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RISTPKKSKKKSNKRSEKSEATDGGFTSQIRKASNTSKNISKAKQLIEKAKALHISRSKV
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB7 TEEIAIPLRRSSRHQTLPERKKLSETEDSVIIIDSSPTALKHPEKNQKKLQCLNDVLGKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TEEIAIPLRRSSRHQTLPERKKLSETEDSVIIIDSSPTALKHPEKNQKKLQCLNDVLGKK
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB7 LNTSTKNVPGKMKVAPLFLVRKAQKAADPVPSFDESSQDTSEKSQDCDVQCKAKRDFLMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LNTSTKNVPGKMKVAPLFLVRKAQKAADPVPSFDESSQDTSEKSQDCDVQCKAKRDFLMS
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB7 GLPDLLKRQIAKKAAALDVYNAVSTSFQRVVHVQQKDDGCCLWHLKPPSCPLLTKFKELN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GLPDLLKRQIAKKAAALDVYNAVSTSFQRVVHVQQKDDGCCLWHLKPPSCPLLTKFKELN
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KB7 TKVIDLSKCGIALGEFSTLNSKLKSGNSAAVFMRTRKEFTEEVRNLLLEEIRWSNPEFSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TKVIDLSKCGIALGEFSTLNSKLKSGNSAAVFMRTRKEFTEEVRNLLLEEIRWSNPEFSL
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KB7 KKYFPLLLKKQIEHQVLSSECHSKQELEADVSHKETKRKLVEAENSKSKRKKPNEYSKNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KKYFPLLLKKQIEHQVLSSECHSKQELEADVSHKETKRKLVEAENSKSKRKKPNEYSKNL
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KB7 EKTNRKSEELSKRNNSSGIKLDSSKDSGTEDMLWTEKYQPQTASELIGNELAIKKLHSWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EKTNRKSEELSKRNNSSGIKLDSSKDSGTEDMLWTEKYQPQTASELIGNELAIKKLHSWL
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KB7 KDWKRRAELEERQNLKGKRDEKHEDFSGGIDFKGSSDDEEESRLCNTVLITGPTGVGKTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KDWKRRAELEERQNLKGKRDEKHEDFSGGIDFKGSSDDEEESRLCNTVLITGPTGVGKTA
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KB7 AVYACAQELGFKIFEVNASSQRSGRQILSQLKEATQSHQVDKQGVNSQKPCFFNSYYIGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AVYACAQELGFKIFEVNASSQRSGRQILSQLKEATQSHQVDKQGVNSQKPCFFNSYYIGK
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KB7 SPKKISSPKKVVTSPRKVPPPSPKSSGPKRALPPKTLANYFKVSPKPKNNEEIGMLLENN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SPKKISSPKKVVTSPRKVPPPSPKSSGPKRALPPKTLANYFKVSPKPKNNEEIGMLLENN
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
pF1KB7 KGIKNSFEQKQITQTKSTNATNSNVKDVGAEEPSRKNATSLILFEEVDVIFDEDAGFLNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KGIKNSFEQKQITQTKSTNATNSNVKDVGAEEPSRKNATSLILFEEVDVIFDEDAGFLNA
             1270      1280      1290      1300      1310      1320

             1330      1340      1350      1360      1370      1380
pF1KB7 IKTFMATTKRPVILTTSDPTFSLMFDGCFEEIKFSTPSLLNVASYLQMICLTENFRTDVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IKTFMATTKRPVILTTSDPTFSLMFDGCFEEIKFSTPSLLNVASYLQMICLTENFRTDVK
             1330      1340      1350      1360      1370      1380

             1390      1400      1410      1420      1430      1440
pF1KB7 DFVTLLTANTCDIRKSILYLQFWIRSGGGVLEERPLTLYRGNSRNVQLVCSEHGLDNKIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DFVTLLTANTCDIRKSILYLQFWIRSGGGVLEERPLTLYRGNSRNVQLVCSEHGLDNKIY
             1390      1400      1410      1420      1430      1440

             1450      1460      1470      1480      1490      1500
pF1KB7 PKNTKKKRVDLPKCDSGCAETLFGLKNIFSPSEDLFSFLKHKITMKEEWHKFIQLLTEFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PKNTKKKRVDLPKCDSGCAETLFGLKNIFSPSEDLFSFLKHKITMKEEWHKFIQLLTEFQ
             1450      1460      1470      1480      1490      1500

             1510      1520      1530      1540      1550      1560
pF1KB7 MRNVDFLYSNLEFILPLPVDTIPETKNFCGPSVTVDASAATKSMNCLARKHSEREQPLKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MRNVDFLYSNLEFILPLPVDTIPETKNFCGPSVTVDASAATKSMNCLARKHSEREQPLKK
             1510      1520      1530      1540      1550      1560

             1570      1580      1590      1600      1610      1620
pF1KB7 SQKKKQKKTLVILDDSDLFDTDLDFPDQSISLSSVSSSSNAEESKTGDEESKARDKGNNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SQKKKQKKTLVILDDSDLFDTDLDFPDQSISLSSVSSSSNAEESKTGDEESKARDKGNNP
             1570      1580      1590      1600      1610      1620

             1630      1640      1650      1660      1670      1680
pF1KB7 ETKKSIPCPPKTTAGKKCSALVSHCLNSLSEFMDNMSFLDALLTDVREQNKYGRNDFSWT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ETKKSIPCPPKTTAGKKCSALVSHCLNSLSEFMDNMSFLDALLTDVREQNKYGRNDFSWT
             1630      1640      1650      1660      1670      1680

             1690      1700      1710      1720      1730      1740
pF1KB7 NGKVTSGLCDEFSLESNDGWTSQSSGELKAAAEALSFTKCSSAISKALETLNSCKKLGRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NGKVTSGLCDEFSLESNDGWTSQSSGELKAAAEALSFTKCSSAISKALETLNSCKKLGRD
             1690      1700      1710      1720      1730      1740

             1750      1760      1770      1780      1790      1800
pF1KB7 PTNDLTFYVSQKRNNVYFSQSAANLDNAWKRISVIKSVFSSRSLLYVGNRQASIIEYLPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PTNDLTFYVSQKRNNVYFSQSAANLDNAWKRISVIKSVFSSRSLLYVGNRQASIIEYLPT
             1750      1760      1770      1780      1790      1800

             1810      1820      1830      1840    
pF1KB7 LRNICKTEKLKEQGKSKRRFLHYFEGIHLDIPKETVNTLAADFP
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LRNICKTEKLKEQGKSKRRFLHYFEGIHLDIPKETVNTLAADFP
             1810      1820      1830      1840    




1844 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 08:50:54 2016 done: Sat Nov  5 08:50:55 2016
 Total Scan time:  6.830 Total Display time:  0.150

Function used was FASTA [36.3.4 Apr, 2011]
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