GENSCAN 1.0 Date run: 3-Nov-116 Time: 09:19:53 Sequence gi568815583f:63177624_63405778 : 228155 bp : 43.19% C+G : Isochore 2 (43 - 51 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Init + 11546 11645 100 1 1 71 14 100 0.548 1.33 1.02 Intr + 11985 12125 141 1 0 65 85 304 0.746 28.12 1.03 Intr + 30584 30658 75 0 0 121 56 16 0.123 1.19 1.04 Intr + 72022 72082 61 2 1 95 101 50 0.031 4.79 1.05 Intr + 72745 72854 110 1 2 67 28 56 0.012 -2.57 1.06 Intr + 76444 76541 98 2 2 84 82 13 0.153 0.03 1.07 Intr + 77884 77961 78 0 0 90 87 69 0.851 6.75 1.08 Intr + 78882 78971 90 2 0 95 94 62 0.973 7.69 1.09 Intr + 82004 82069 66 1 0 95 94 55 0.889 5.90 1.10 Term + 92263 92475 213 0 0 96 44 43 0.316 -2.07 1.11 PlyA + 93946 93951 6 1.05 2.00 Prom + 99390 99429 40 -5.26 2.01 Init + 99577 99658 82 0 1 99 70 156 0.935 14.03 2.02 Intr + 99909 100113 205 1 1 52 76 228 0.910 16.26 2.03 Intr + 101538 101708 171 0 0 99 106 60 0.945 7.96 2.04 Intr + 108935 109005 71 2 2 70 115 41 0.798 3.83 2.05 Intr + 124722 124849 128 1 2 72 109 91 0.666 10.00 2.06 Term + 127991 128158 168 1 0 114 37 44 0.508 -0.22 2.07 PlyA + 128261 128266 6 1.05 3.15 PlyA - 128857 128852 6 1.05 3.14 Term - 132113 131862 252 2 0 89 32 126 0.310 2.74 3.13 Intr - 144093 143894 200 1 2 67 95 108 0.851 8.47 3.12 Intr - 161322 161196 127 0 1 87 100 117 0.975 13.05 3.11 Intr - 162822 162665 158 1 2 100 93 199 0.999 21.33 3.10 Intr - 163160 163097 64 2 1 127 100 60 0.867 9.39 3.09 Intr - 164474 164379 96 2 0 76 94 97 0.998 9.31 3.08 Intr - 167996 167854 143 0 2 94 107 255 0.999 28.07 3.07 Intr - 169086 168907 180 1 0 64 94 221 0.999 20.14 3.06 Intr - 176052 175936 117 1 0 53 79 54 0.131 1.44 3.05 Intr - 182315 182241 75 0 0 28 84 92 0.132 2.29 3.04 Intr - 190747 190629 119 0 2 134 24 63 0.438 4.61 3.03 Intr - 191203 191032 172 2 1 21 94 95 0.325 2.40 3.02 Intr - 198055 198035 21 2 0 118 111 -5 0.220 2.32 3.01 Init - 204097 204013 85 1 1 91 55 148 0.222 10.91 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815583f:63177624_63405778|GENSCAN_predicted_peptide_1|343_aa MRELRGSDSEVLDLEGVCTQRNNKVKFPRLDQQKGRSEKMAKTYDYLFKLLLIGDSGVGK TCLLFRFSEDAFNTTFISTIGILNSNPGTLNICAGWTVATFSAGQWTQRVRKDSEQSRQR TTEEPCPATIISYLTTSTTSTAVAHLPVIPLTTILPAGRKESDLCSLAKLTFFHSIQRSL VQHQQEIYNVSAICQGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMND KRQVSKERGEKLAIDYGIKFLETSAKSSANVEEVGHVLIPGTSECYFIWQKGLCRGDRVK DHEMGDYLDPSGPNVILGVLLMRGQEESEESHVMMDAEGEKVL >gi568815583f:63177624_63405778|GENSCAN_predicted_CDS_1|1032_bp atgcgggaactacggggctctgattctgaggtcctggatttggaaggcgtctgcacacaa agaaataacaaagttaagttcccgcggctcgaccagcagaagggccggagcgagaagatg gcgaagacgtacgattatctcttcaagctcctgctgatcggcgactcgggggtaggcaag acctgcctcctgttccgcttctcagaggacgccttcaacaccaccttcatctccaccatc ggaatcctaaactctaacccagggaccctcaacatctgtgctgggtggactgtggccaca ttttcagctggccagtggacacagcgggtcaggaaagattccgaacaatcacgacagcgt actacagaggagccatgccctgccaccattatctcttacctcaccacctccacaacatcc actgctgtggctcatctccctgtcatccccctgaccaccattctgccagctggccggaaa gaatctgatctgtgcagccttgccaagctgactttctttcactcaatccagcggtctctg gttcaacatcagcaagagatttacaatgtttctgctatttgccagggcattatgctggtc tatgacatcacaaatgaaaaatcctttgacaatattaaaaattggatcagaaacattgaa gagcatgcctcttccgatgtcgaaagaatgatcctgggtaacaaatgtgatatgaatgac aaaagacaagtgtcaaaagaaagaggggagaagctagcaattgactatgggattaaattc ttggagacaagcgcaaaatccagtgcaaatgtagaagaggttggtcatgtcttaatcccc ggaacctctgaatgttactttatatggcaaaaaggactttgcagaggggatcgagttaag gatcatgagatgggagattatcttgatccaagtggacccaatgtaatcctaggggtcctt ctcatgagaggacaggaagagtcagaagaaagccacgtgatgatggacgcagagggagaa aaggtgctgtga >gi568815583f:63177624_63405778|GENSCAN_predicted_peptide_2|274_aa MAGALTSPRTPASGAGAAAWPWRFRTPAPHPEPHPPNPARAGSISRPQRAPGSVSAVAMT AAVFFGCAFIAFGPALALYVFTIATEPLRIIFLIAGAFFWLVSLLISSLVWFMARVIIDN KDGPTQKYLLIFGAFVSVYIQEMFRFAYYKLLKKASEGLKSINPGETAPSMRLLAYAFMT LVIILLHVFWGIVFFDGCEKKKWGILLIVLLTHLLVSAQTFISSYYGINLASAFIILVLM GTWAFLAAGGSCRSLKLCLLCQDKNFLLYNQRSR >gi568815583f:63177624_63405778|GENSCAN_predicted_CDS_2|825_bp atggctggggccctaacgtcgccgaggacgcccgcctcgggagcaggagctgcggcgtgg ccctggcgcttccggacacccgccccccaccccgagccccacccaccgaaccccgcccgc gccgggagcatctcgcgtccccaacgggcccccgggtcggtttccgcggtggccatgact gcggccgtgttcttcggctgcgccttcattgccttcgggcctgcgctcgccctttatgtc ttcaccatcgccaccgagccgttgcgtatcatcttcctcatcgccggagctttcttctgg ttggtgtctctactgatttcgtcccttgtttggttcatggcaagagtcattattgacaac aaagatggaccaacacagaaatatctgctgatctttggagcgtttgtctctgtctatatc caagaaatgttccgatttgcatattataaactcttaaaaaaagccagtgaaggtttgaag agtataaacccaggtgagacagcaccctctatgcgactgctggcctatgctttcatgacg ctggtcattatcttgctgcatgtattctggggcattgtattttttgatggctgtgagaag aaaaagtggggcatcctccttatcgttctcctgacccacctgctggtgtcagcccagacc ttcataagttcttattatggaataaacctggcgtcagcatttataatcctggtgctcatg ggcacctgggcattcttagctgcgggaggcagctgccgaagcctgaaactctgcctgctc tgccaagacaagaactttcttctttacaaccagcgctccagataa >gi568815583f:63177624_63405778|GENSCAN_predicted_peptide_3|602_aa MPRRSLHAAAVLLLVILKEQPSSPAPVNGSKWTYFAPFSHWGSIKPWNRRCSGLAGEEEG RAVGLSCQGLSGLWLCSDLTILLPAGLEPRAFRGNCWAKGAGTTVERRHHGQSLPGATPP GQEREIAPATVKGATEELSAENCLDLVCTVVESGELEDGFRGDMKSAVPSESCGLAVFSV ALATRAGLLDDPQREAGPDGENSWSKKYPSCGGLLQSPIDLHSDILQYDASLTPLEFQGY NLSANKQFLLTNNGHSVKLNLPSDMHIQGLQSRYSATQLHLHWGNPNDPHGSEHTVSGQH FAAELHIVHYNSDLYPDASTASNKSEGLAVLAVLIEMGSFNPSYDKIFSHLQHVKYKGQE AFVPGFNIEELLPERTAEYYRYRGSLTTPPCNPTVLWTVFRNPVQISQEQLLALETALYC THMDDPSPREMINNFRQVQKFDERLVYTSFSQGVPLPLSRGLPAGYLEQLQPRFRKETGP LGHRDHLPVRSSRAAIHTGDRPARGPRARIQLSQDVRGKVRSKEPLGPENVSSNNVINIA CNSLISSQSEQASNGFEYRIIIPYVSCLMARAKLNPLAALSPHQGKEREKDSIGYSESPG KS >gi568815583f:63177624_63405778|GENSCAN_predicted_CDS_3|1809_bp atgccccggcgcagcctgcacgcggcggccgtgctcctgctggtgatcttaaaggaacag ccttccagcccggccccagtgaacggttccaagtggacttattttgcgcccttttcccac tggggcagcatcaagccttggaaccgcaggtgcagcgggctggcaggtgaggaggaagga cgagctgtggggctgtcctgccagggcctttcaggcctctggctgtgctccgacttgacc attctgctacctgctggtcttgagccccgggcattcaggggcaactgctgggcgaagggt gcaggcaccacggtggagcgcaggcaccatggccagtctcttccaggggccacaccacca ggccaagaaagagagatagcacctgctacagtcaaaggagccactgaagaactttcagca gagaactgtctggatctggtgtgcactgttgtggagagtggagagctggaggatggattt agaggggacatgaagtctgcggtcccctctgagtcctgtggcttagctgtgttctctgtg gctctagccacaagagcgggactgttggatgacccccagagagaggcaggtcctgatggg gagaatagctggtccaagaagtacccgtcgtgtgggggcctgctgcagtcccccatagac ctgcacagtgacatcctccagtatgacgccagcctcacgcccctcgagttccaaggctac aatctgtctgccaacaagcagtttctcctgaccaacaatggccattcagtgaagctgaac ctgccctcggacatgcacatccagggcctccagtctcgctacagtgccacgcagctgcac ctgcactgggggaacccgaatgacccgcacggctctgagcacaccgtcagcggacagcac ttcgccgccgagctgcacattgtccattataactcagacctttatcctgacgccagcact gccagcaacaagtcagaaggcctcgctgtcctggctgttctcattgagatgggctccttc aatccgtcctatgacaagatcttcagtcaccttcaacatgtaaagtacaaaggccaggaa gcattcgtcccgggattcaacattgaagagctgcttccggagaggaccgctgaatattac cgctaccgggggtccctgaccacacccccttgcaaccccactgtgctctggacagttttc cgaaaccccgtgcaaatttcccaggagcagctgctggctttggagacagccctgtactgc acacacatggacgacccttcccccagagaaatgatcaacaacttccggcaggtccagaag ttcgatgagaggctggtatacacctccttctcccaaggagtgcccctcccgttgtcacgt ggccttcctgctgggtatctggagcagttgcagcctcgcttccggaaggaaacggggcct ctggggcacagggaccacctgccagtgcgttccagccgggctgccatccacactggagac cgccccgcacgtggtcctcgggctcggattcagctgtcgcaggatgtgaggggaaaggtt agaagcaaagagcccttgggacctgagaacgtttcatccaataacgtcatcaacatagcc tgcaacagcctcatttcaagccagagtgaacaagcatcaaatggttttgagtatcgtatc ataatcccctatgtatcctgtctgatggcaagggccaagctcaaccctttagctgcactg tctcctcaccaagggaaagaaagagaaaaggactctataggctactcagaatcaccaggt aaaagctaa