GENSCAN 1.0	Date run:  4-Nov-116	Time: 23:21:11

Sequence gi568815597r:229331502_229533115 : 201614 bp : 43.96% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.06 PlyA -    291    286    6                               1.05
 1.05 Term -   9990   9839  152  1  2  102   42    95 0.899   4.37
 1.04 Intr -  11012  10598  415  2  1   70   80   691 0.869  60.18
 1.03 Intr -  11297  11162  136  1  1   86   76   -17 0.511  -2.53
 1.02 Intr -  11544  11411  134  0  2   75   94    65 0.912   5.24
 1.01 Init -  13876  13778   99  1  0   63   64    61 0.559   1.46
 1.00 Prom -  22945  22906   40                              -5.56

 2.00 Prom +  34864  34903   40                              -2.86
 2.01 Init +  36720  36777   58  2  1   74   88    27 0.598   2.85
 2.02 Intr +  45184  45223   40  2  1  104  101     4 0.293   0.58
 2.03 Intr +  45996  46207  212  0  2  101   42    59 0.151   1.16
 2.04 Term +  47423  47541  119  0  2   73   44   124 0.214   5.20
 2.05 PlyA +  51699  51704    6                               1.05

 3.00 Prom +  63049  63088   40                              -2.46
 3.01 Init +  71803  71856   54  0  0   88   95   -28 0.153  -0.82
 3.02 Intr +  76243  76367  125  0  2   42  116   143 0.890  11.88
 3.03 Intr +  80007  80091   85  0  1  133   73    15 0.617   4.32
 3.04 Term +  84164  84358  195  1  0   55   33   109 0.251  -0.49
 3.05 PlyA +  85139  85144    6                               1.05

 4.27 PlyA -  85847  85842    6                               1.05
 4.26 Term - 100141  99998  144  1  0   88   42   316 0.999  24.91
 4.25 Intr - 100401 100220  182  1  2  105   98   366 0.999  38.89
 4.24 Intr - 100684 100493  192  2  0  128   97   522 0.999  56.56
 4.23 Intr - 100930 100769  162  2  0   92   85   406 0.999  40.65
 4.22 Intr - 101379 101055  325  0  1   85  117   668 0.999  64.75
 4.21 Intr - 101626 101486  141  1  0  101   71   274 0.989  27.55
 4.20 Intr - 103381 103266  116  2  2   62   40    90 0.015   1.77
 4.19 Intr - 113501 113413   89  1  2   81  115    86 0.939  10.21
 4.18 Intr - 117553 117489   65  1  2   16   81    52 0.292  -5.18
 4.17 Intr - 119104 119024   81  1  0   51  107    57 0.435   3.73
 4.16 Intr - 129268 129110  159  1  0   79  116    43 0.949   6.38
 4.15 Intr - 132175 132042  134  2  2   92   64   160 0.954  14.36
 4.14 Intr - 133374 133123  252  1  0   75   88   316 0.995  27.71
 4.13 Intr - 134018 133919  100  2  1   88   57    34 0.985  -0.02
 4.12 Intr - 135255 135133  123  0  0   88   82    77 0.991   7.88
 4.11 Intr - 139281 139079  203  1  2    0   94   141 0.307   4.90
 4.10 Intr - 146259 146096  164  2  2   90   90    54 0.516   5.42
 4.09 Intr - 152644 152553   92  1  2  105   75    48 0.948   3.99
 4.08 Intr - 155027 154870  158  0  2  109   80    32 0.645   4.23
 4.07 Intr - 156112 155935  178  1  1   62   85    40 0.319   0.59
 4.06 Intr - 164546 164391  156  2  0   89   86     1 0.513   0.21
 4.05 Intr - 166805 166635  171  2  0   98   98   -14 0.514   0.74
 4.04 Intr - 169362 169255  108  0  0   61   96    18 0.180   0.38
 4.03 Intr - 170601 170498  104  1  2   80   90    52 0.328   4.49
 4.02 Intr - 174657 174539  119  2  2   21  100    66 0.271   1.21
 4.01 Init - 176748 176567  182  0  2   62  115    80 0.247   4.82
 4.00 Prom - 184317 184278   40                              -6.16

 5.08 PlyA - 184962 184957    6                               1.05
 5.07 Term - 186909 186678  232  2  1   49   49   182 0.707   6.35
 5.06 Intr - 187374 187340   35  0  2  116   94    14 0.989   1.82
 5.05 Intr - 190134 190091   44  1  2   76  121    40 0.996   4.06
 5.04 Intr - 194615 194435  181  2  1   76   57   155 0.974  10.64
 5.03 Intr - 195807 195728   80  1  2   82  110    45 0.879   5.37
 5.02 Intr - 198907 198698  210  2  0   83  107    80 0.980   8.28
 5.01 Intr - 200230 200135   96  2  0   96   76    36 0.645   3.18

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  49535  49420  116  0  2   73   51   152 0.940   8.73
S.002 Term - 110539 110403  137  2  2  108   32    80 0.886   2.58


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:229331502_229533115|GENSCAN_predicted_peptide_1|311_aa
MQQEMYMTLRCQSRLLEDVTKTAQPTAHPTASYLERGPPRRHLAQEESARESELRFSCCA
TRASGLGAEDRPGAAGRSPSLLRSPRPSPQPPCLPPTEQPSSAARPSTPAAPVPASALGP
GRRAAGSEERLALEAADGTMSPGSGVKSEYMKRYQEPRWEEYGPCYRELLHYRLGRRLLE
QAHAPWLWDDWGPAGSSEDSASSESSGAGGPAPRCAPPSPPPPVEPATQEEAERRARGAP
EEQDAEAGDAEAEDAEDAALPDPKAPVALRVFSRHGPFTFFPAQRLAGLGTQLNASVQPG
VTNGSFQITGF

>gi568815597r:229331502_229533115|GENSCAN_predicted_CDS_1|936_bp
atgcagcaggagatgtatatgaccttgagatgccagtccaggcttctggaggatgtgacc
aagacggcccagcccacagcccaccccactgccagttatctggagcgcgggccgccgcgg
cgacatcttgctcaggaggaaagcgcgcgggagagcgagctgcgctttagctgctgcgcc
acgcgcgcctcgggcctgggcgcagaggatcggccgggcgcggcgggaaggagccccagt
ctcctgcggtcccctcgccccagcccgcagcctccctgccttccgcccactgagcagccc
tcctcggcggcgcgcccctcgaccccagcagccccggtccccgcctctgctcttggtccc
ggccgccgggctgcgggcagcgaggagcggctggcgctcgaggcggcggacggcaccatg
tccccggggagcggggtgaagagcgagtacatgaagcgctaccaggagccgcgctgggag
gagtacgggccgtgctaccgcgagctgctgcactaccgcctaggccgccggctgctggag
caggcgcacgcgccctggctctgggacgactggggcccggccggctcctcggaggactcg
gcgtcgtcagagtcgtcgggcgccgggggccccgcaccccggtgcgccccgccctcgccc
ccgccgcccgtagagccggcgacccaggaggaggcggaacggcgggcgcgcggggccccg
gaggagcaggacgcggaggccggggacgcggaggccgaggacgcggaggacgcggctctg
ccagatccgaaagcgccggtggcgctgcgcgtgttttcaaggcatggccccttcaccttc
tttcctgcccagaggcttgcagggctggggacccagttgaacgcctcagtacagcctgga
gtaaccaatggttccttccagatcactggattttaa

>gi568815597r:229331502_229533115|GENSCAN_predicted_peptide_2|142_aa
MVPGSASGEGFRLLLFVVRGQKDKEEPPSRPLREKGSLSLTHGGALSGHLCTGPLQGQMR
QPEQNPLPAWPTKEPTTLHLAQPQPKAAPTRCAFRDLPGPLECESGITVIFPCHFKTYEY
MPPVATQQYIIEHKQYLTDPSC

>gi568815597r:229331502_229533115|GENSCAN_predicted_CDS_2|429_bp
atggtgccaggatctgcttctggggagggcttcaggctgctgctattcgtggtgagaggg
cagaaagataaagaggagcctccctccaggcctctgcgggagaagggaagtctctccctc
acccatgggggagcactgagtggccacctctgcacaggccctctgcaggggcagatgagg
cagcccgaacagaaccctctgcccgcctggccaaccaaagagcccacgacactccatctg
gcccaaccgcagccgaaggcggcaccaactcgctgcgccttcagggacttgccagggcca
cttgagtgtgaatctggcatcacagtcattttcccatgtcacttcaaaacctatgagtat
atgcctccagtggccacacagcagtacatcatagagcacaagcagtacctcacagaccca
tcatgctag

>gi568815597r:229331502_229533115|GENSCAN_predicted_peptide_3|152_aa
MEHILSTSPHVPSAWPHLERHPSRIRPRTPQLGTLTRLSRGFSGIRLQGNQLFAQTFKPS
PRAQAFKQTLGPARLFEQVSHIYHSLEAPLFTFTWTNPDTHQAQQITWAVLLQGFTDIPH
YFSQAQISTSSVTYLGIILIKTLVLSLLIVSG

>gi568815597r:229331502_229533115|GENSCAN_predicted_CDS_3|459_bp
atggagcacatattaagcacctcaccccacgtgccctcagcatggccccacctggaaagg
caccctagccggattcgccctcggacgccccagctgggcacactcacgcggctctcccgc
ggcttctcgggaattcgcctccagggcaatcagctcttcgcacaaacgttcaaaccaagc
cccagagcacaggccttcaagcagaccctgggtccagccaggctttttgagcaggtttct
catatttatcattccctcgaggcacctctcttcactttcacttggactaatcctgacacc
catcaggctcagcaaattacctgggctgtactgctgcaaggcttcacagacatcccccat
tacttcagtcaagcccaaatttcaacctcatctgttacctatctcggcataattctcata
aaaacactcgtgctctccctgctgatcgtgtccggctaa

>gi568815597r:229331502_229533115|GENSCAN_predicted_peptide_4|1299_aa
MFPAAPSPRTPGTGSRRGPLAGLGPGSTPRTASRKGLPLGSAVSSPVLFSPVGRRSSLSS
RGTPTRMFPHHSITESVNYDVKTFGSSLPVKVMEALTLAEVDDQLTINIDEGGWACLVCK
EKLIIWKIALSPITKLSVCKELQLPPSDFHWSADLVALSYSSPSGEAHSTQGGSFILSSS
GSQLIRLIPESSGKIHQHILPQGQGMLSGIGRKVSSLFGILSPSSDLTLSSVLWDRERSS
FYSLTSSNISKWELDDSSEKHAYSWDINRALKENITDAIWSEDLILCQLTVPNFSNQTAY
LYNESAVYVCSTGTGKFSLPQEKIVFNAQGTVAVLESMIGDSVLGAGACGGVPIIFSRNS
GLVSITSRENVSILAEDLEGSLASSVAGPNSESMIFETTTKNETIAQEDKIKLLKAAFLQ
YCRKDLGHAQMVVDELFSSHSDLDSDSELDRAVTQISVDLMDDYPASDPRWAESVPEGSF
PVRGTPMATRLLLCEHAEKLSAAIVLKNHHSRLSDLVNTAILIALNKREYEIPSNLTPAD
VFFREVSQVDTICECLLEHEEQVLRDAPMDSIEWAEVVINVNNILKDMLQAASHYRQNRN
SLYRREESLEKEPEYVPWTATSGPGGIRTVIIRQHEIVLKVAYPQADSNLRNIVTEQLVA
LIDCFLDGYVSQLKSVDKSSNRERYDNLEMEYLQKRSDLLSPLLSLGQYLWAASLAEKYC
DFDILVQMCEQTDNQSRLQRYMTQFADQNFSDFLFRWYLEKGKRGKLLSQPISQHGQLAN
FLQAHEHLSWLHEINSQELEKLYICEENRRANEYDFKKALDLLEYIDESITEDFCDQTCW
DFPPPTLGNHWSSSDGKDDPIEVSKDSIFVKILQKLLKDGLSPGAPAPPPRRSALASPRQ
LSILRQLRALRPPVALCAKLDTMCDEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVG
RPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRV
APEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSG
DGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKL
CYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHE
TTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK
YSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF

>gi568815597r:229331502_229533115|GENSCAN_predicted_CDS_4|3900_bp
atgttcccagccgccccttctccgcggaccccgggtaccgggtcccgaaggggcccgctg
gccggactcgggcccggctccacgccccggacggctagcaggaagggtctgcccctgggg
tctgcagtcagctccccagtgctcttctcgccggtcggccggcgtagctcgctaagctcg
cggggaacaccaacacgaatgttcccacaccactccataactgagtctgtgaactatgat
gtgaaaacgtttggatcttctcttcctgttaaagtcatggaagccctaacattggctgaa
gtcgatgaccagctgaccattaacatagatgaaggtggatgggcttgtctggtgtgcaaa
gagaagctcattatttggaagattgctctgtcacctattactaagttatccgtttgcaaa
gaacttcagctgccacctagtgatttccactggagtgccgacttagtggctctttcttac
tcttctccctcaggtgaagcacattctactcagggaggaagttttattttgtcttcatca
ggaagccaactaattcggttgatacctgagagctcaggaaagattcatcagcatatcctg
cctcaggggcaaggcatgctttcaggaattggtcgaaaagtttcttctctttttggaatt
ttatctcctagtagtgatctcacactttcaagtgttctctgggatagagagagatcaagc
ttttatagcctgacgagttcaaacatcagtaaatgggaattagatgattcttcagaaaag
catgcatacagttgggatataaatagagccctgaaggaaaacattaccgatgctatttgg
tctgaagacctgattttgtgtcagttgacggtcccaaacttttcaaaccagactgcctat
ctgtataacgaaagtgctgtctatgtgtgctccacaggaactgggaaattttctcttccc
caggagaaaattgtctttaatgcacaaggtacagtagcagttttagaaagcatgattgga
gatagtgttttaggtgctggtgcctgtggtggtgttcctatcattttttctagaaacagt
ggactggtgtctattacttcaagggaaaatgtgtctatattggcagaagacttggaaggg
tctttagcatcttcagttgctggaccaaacagtgagagtatgatttttgagaccactaca
aagaatgaaactatagcccaggaagataaaatcaagttgctgaaagctgcctttctgcaa
tactgcagaaaagatttaggtcatgctcaaatggtggttgatgagctcttttcctctcac
tctgatttggattctgattctgaactagacagggcagttacccaaatcagtgtagacctg
atggatgactacccagcatctgacccacggtgggctgagtctgtccctgagggcagtttt
ccagttagagggacaccgatggccactcgactgttgctctgtgagcatgccgaaaagctg
tcagccgccattgttctcaagaaccaccactcccggctttctgaccttgtcaacacagcc
atattgattgctttgaacaagagggagtatgaaatcccatccaacctgactcctgcagat
gtctttttcagggaggtatcccaagtagataccatctgtgagtgcttactggagcatgag
gagcaagtcttgagggatgcacctatggattccattgaatgggctgaagtggtgatcaat
gtgaacaatattctcaaggatatgctgcaggctgctagtcattatcgccaaaatagaaac
tctttgtatagaagagaagaatcactagaaaaagaacctgaatatgttccatggacggca
acaagtggtcctggtggcatccgaacggtaataatacgccagcatgagattgtcctgaag
gtggcttatccacaggcagacagcaacctccgaaacatcgtgaccgagcagctggtagcc
ctgatcgattgcttcctggatggttatgtttctcagcttaagtctgtggataaatccagt
aatcgggaaagatatgacaatctggagatggaatacctacagaaaagatcagatctctta
tctcctcttctttcactaggccagtacctgtgggctgcttctctagcagagaaatactgt
gactttgatatattggtacaaatgtgtgagcagactgacaaccagagccgactccagcgc
tacatgacccagtttgctgatcagaatttttcagactttctcttccgttggtatctggag
aaaggaaagcgaggcaaattattatctcagcccatttctcagcatggacagttggcaaat
tttttgcaagctcatgaacatctcagctggttacatgaaattaatagccaagaattagaa
aagctatatatctgtgaagaaaatagaagagctaatgaatatgatttcaagaaagctttg
gacttgttggaatatattgatgagtcaataacagaagacttctgtgaccagacgtgttgg
gatttcccacctcctacactgggcaaccactggtccagttctgatggcaaagatgatcca
attgaagtatctaaagacagtatatttgtgaagatcttacagaaacttttaaaagatggc
ctatccccgggagcccccgcgcctcctccccggcgctccgccctcgcctccccccgccag
ttgtctatcctgcgacagctgcgcgccctccggccgccggtggccctctgtgcgaaacta
gacacaatgtgcgacgaagacgagaccaccgccctcgtgtgcgacaatggctccggcctg
gtgaaagccggcttcgccggggatgacgcccctagggccgtgttcccgtccatcgtgggc
cgcccccgacaccagggcgtcatggtcggtatgggtcagaaagattcctacgtgggcgac
gaggctcagagcaagagaggtatcctgaccctgaagtaccctatcgagcacggcatcatc
accaactgggatgacatggagaagatctggcaccacaccttctacaacgagcttcgcgtg
gctcccgaggagcaccccaccctgctcaccgaggcccccctcaatcccaaggccaaccgc
gagaagatgacccagatcatgtttgagaccttcaacgtgcccgccatgtacgtggccatc
caggccgtgctgtccctctacgcctccggcaggaccaccggcatcgtgctggactccggc
gacggcgtcacccacaacgtgcccatttatgagggctacgcgctgccgcacgccatcatg
cgcctggacctggcgggccgcgatctcaccgactacctgatgaagatcctcactgagcgt
ggctactccttcgtgaccacagctgagcgcgagatcgtgcgcgacatcaaggagaagctg
tgctacgtggccctggacttcgagaacgagatggcgacggccgcctcctcctcctccctg
gaaaagagctacgagctgccagacgggcaggtcatcaccatcggcaacgagcgcttccgc
tgcccggagacgctcttccagccctccttcatcggtatggagtcggcgggcattcacgag
accacctacaacagcatcatgaagtgtgacatcgacatcaggaaggacctgtatgccaac
aacgtcatgtcggggggcaccacgatgtaccctgggatcgctgaccgcatgcagaaagag
atcaccgcgctggcacccagcaccatgaagatcaagatcatcgccccgccggagcgcaaa
tactcggtgtggatcggcggctccatcctggcctcgctgtccaccttccagcagatgtgg
atcaccaagcaggagtacgacgaggccggcccttccatcgtccaccgcaaatgcttctag

>gi568815597r:229331502_229533115|GENSCAN_predicted_peptide_5|292_aa
XLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPE
VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWL
RSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTV
VGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVL
VIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQSFISA

>gi568815597r:229331502_229533115|GENSCAN_predicted_CDS_5|879_bp
ngtctgagctctttctactcggagctgatgaaaggactgggtgcaggggggcgcctctgg
gagctcctggagagagagcccaagctgccttttaacgagggggtcatcttaaatgagaaa
agcttccagggtgctttggagtttaagaacgtgcattttgcctatccagctcgcccagag
gtgcccatatttcaggatttcagcctttccattccgtcaggatctgtcacggcactggtt
ggcccaagtggttctggcaaatcaacagtgctttcactcctgctgaggttgtacgaccct
gcttctggaactattagtcttgatggccatgacatccgtcagctaaacccagtgtggctg
agatccaaaattgggacagtgagtcaggaacccattttgttttcttgctctattgctgag
aacattgcttatggtgctgatgacccttcctctgtgaccgctgaggaaatccagagagtg
gctgaagtggccaatgcagtggccttcatccggaatttcccccaagggttcaacactgtg
gttggagaaaagggtgttctcctctcaggtgggcagaaacagcggattgcgattgcccgt
gctctgctaaagaatcccaaaattcttctcctagatgaagcaaccagtgcgctggatgcc
gaaaatgagtaccttgttcaagaagctctagatcgactgatggatggaagaacggtgtta
gttattgcccatcgtctgtccaccattaagaatgctaatatggttgctgttcttgaccaa
ggaaaaattactgaatatggaaaacatgaagagctgctttcaaaaccaaatgggatatac
agaaaactaatgaacaaacaaagttttatttcagcataa