Result of FASTA (ccds) for
pF1KB6758
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6758, 147 aa
1>>>pF1KB6758 147 - 147 aa - 147 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0542+/-0.00078; mu= 12.6592+/- 0.047
mean_var=62.2426+/-12.079, 0's: 0 Z-trim(107.6): 42 B-trim: 3 in 1/51
Lambda= 0.162566
statistics sampled from 9647 (9673) to 9647 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.297), width: 16
Scan time: 1.700
The best scores are: opt bits E(32554)
CCDS33587.1 SUMO3 gene_id:6612|Hs108|chr21 ( 103) 495 124.1 2.2e-29
CCDS45774.1 SUMO2 gene_id:6613|Hs108|chr17 ( 95) 475 119.4 5.2e-28
CCDS34549.1 SUMO4 gene_id:387082|Hs108|chr6 ( 95) 384 98.0 1.4e-21
CCDS68220.1 SUMO3 gene_id:6612|Hs108|chr21 ( 141) 330 85.5 1.2e-17
CCDS45773.1 SUMO2 gene_id:6613|Hs108|chr17 ( 71) 310 80.6 1.8e-16
>>CCDS33587.1 SUMO3 gene_id:6612|Hs108|chr21 (103 aa)
initn: 495 init1: 495 opt: 495 Z-score: 641.1 bits: 124.1 E(32554): 2.2e-29
Smith-Waterman score: 495; 100.0% identity (100.0% similar) in 74 aa overlap (1-74:1-74)
10 20 30 40 50 60
pF1KB6 MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 FDGQPINETDTPAQGIILSWKELWTWKQTFFFETESRFVAQARMQWRSLSSLCKLCLLSS
::::::::::::::
CCDS33 FDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVPESSLAGHSF
70 80 90 100
>>CCDS45774.1 SUMO2 gene_id:6613|Hs108|chr17 (95 aa)
initn: 413 init1: 413 opt: 475 Z-score: 616.3 bits: 119.4 E(32554): 5.2e-28
Smith-Waterman score: 475; 96.0% identity (98.7% similar) in 75 aa overlap (1-74:1-75)
10 20 30 40 50
pF1KB6 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
:..::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 RFDGQPINETDTPAQGIILSWKELWTWKQTFFFETESRFVAQARMQWRSLSSLCKLCLLS
:::::::::::::::
CCDS45 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY
70 80 90
>>CCDS34549.1 SUMO4 gene_id:387082|Hs108|chr6 (95 aa)
initn: 342 init1: 342 opt: 384 Z-score: 501.0 bits: 98.0 E(32554): 1.4e-21
Smith-Waterman score: 384; 80.0% identity (90.7% similar) in 75 aa overlap (1-74:1-75)
10 20 30 40 50
pF1KB6 MSEEKPKEGVKTEND-HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
:..::: : :::::. ::::::::::::::::::::.:::::::::::: .:::..::::
CCDS34 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 RFDGQPINETDTPAQGIILSWKELWTWKQTFFFETESRFVAQARMQWRSLSSLCKLCLLS
:: ::::. :: :::
CCDS34 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY
70 80 90
>>CCDS68220.1 SUMO3 gene_id:6612|Hs108|chr21 (141 aa)
initn: 330 init1: 330 opt: 330 Z-score: 430.0 bits: 85.5 E(32554): 1.2e-17
Smith-Waterman score: 409; 66.1% identity (66.1% similar) in 112 aa overlap (1-74:1-112)
10 20 30 40 50
pF1KB6 MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ----------
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQVRHLAPPQSL
10 20 30 40 50 60
60 70 80
pF1KB6 ----------------------------GLSMRQIRFRFDGQPINETDTPAQGIILSWKE
::::::::::::::::::::::::
CCDS68 PVCALVLCVPGIPRARASRGWTQMQLPEGLSMRQIRFRFDGQPINETDTPAQLEMEDEDT
70 80 90 100 110 120
90 100 110 120 130 140
pF1KB6 LWTWKQTFFFETESRFVAQARMQWRSLSSLCKLCLLSSRHSPASASQVAGTIGAHHHSRL
CCDS68 IDVFQQQTGGVPESSLAGHSF
130 140
>>CCDS45773.1 SUMO2 gene_id:6613|Hs108|chr17 (71 aa)
initn: 248 init1: 248 opt: 310 Z-score: 409.0 bits: 80.6 E(32554): 1.8e-16
Smith-Waterman score: 310; 94.1% identity (98.0% similar) in 51 aa overlap (1-50:1-51)
10 20 30 40 50
pF1KB6 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
:..::::::::::: ::::::::::::::::::::::::::::::::::::
CCDS45 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQLEMEDEDTI
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 RFDGQPINETDTPAQGIILSWKELWTWKQTFFFETESRFVAQARMQWRSLSSLCKLCLLS
CCDS45 DVFQQQTGGVY
70
147 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 18:43:27 2016 done: Sat Nov 5 18:43:27 2016
Total Scan time: 1.700 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]