Result of FASTA (ccds) for pF1KB7627
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7627, 297 aa
  1>>>pF1KB7627 297 - 297 aa - 297 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8029+/-0.000811; mu= 14.3085+/- 0.049
 mean_var=107.2454+/-20.934, 0's: 0 Z-trim(111.4): 57  B-trim: 57 in 2/50
 Lambda= 0.123847
 statistics sampled from 12287 (12340) to 12287 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.379), width:  16
 Scan time:  2.650

The best scores are:                                      opt bits E(32554)
CCDS14386.1 EDA2R gene_id:60401|Hs108|chrX         ( 297) 2087 383.1 1.4e-106
CCDS56603.1 EDA2R gene_id:60401|Hs108|chrX         ( 318) 1283 239.5 2.5e-63
CCDS9301.1 TNFRSF19 gene_id:55504|Hs108|chr13      ( 417)  661 128.4 8.7e-30
CCDS9302.1 TNFRSF19 gene_id:55504|Hs108|chr13      ( 423)  661 128.4 8.8e-30


>>CCDS14386.1 EDA2R gene_id:60401|Hs108|chrX              (297 aa)
 initn: 2087 init1: 2087 opt: 2087  Z-score: 2027.1  bits: 383.1 E(32554): 1.4e-106
Smith-Waterman score: 2087; 99.3% identity (100.0% similar) in 297 aa overlap (1-297:1-297)

               10        20        30        40        50        60
pF1KB7 MDCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHKCQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
CCDS14 MDCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHRCQS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 CITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 CITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 QLSLVEADAPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQRGGLLQFEA
       ::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QLSLVEADTPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQRGGLLQFEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 DKTAKEESLFPVPPSKETSAESQVSENIFQTQPLNPILEDDCSSTSGFPTQESFTMASCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DKTAKEESLFPVPPSKETSAESQVSENIFQTQPLNPILEDDCSSTSGFPTQESFTMASCT
              190       200       210       220       230       240

              250       260       270       280       290       
pF1KB7 SESHSHWVHSPIECTELDLQKFSSSASYTGAETLGGNTVESTGDRLELNVPFEVPSP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SESHSHWVHSPIECTELDLQKFSSSASYTGAETLGGNTVESTGDRLELNVPFEVPSP
              250       260       270       280       290       

>>CCDS56603.1 EDA2R gene_id:60401|Hs108|chrX              (318 aa)
 initn: 2073 init1: 1260 opt: 1283  Z-score: 1250.4  bits: 239.5 E(32554): 2.5e-63
Smith-Waterman score: 2035; 92.8% identity (93.4% similar) in 318 aa overlap (1-297:1-318)

               10        20        30        40        50        60
pF1KB7 MDCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHKCQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
CCDS56 MDCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHRCQS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 CITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 CITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAF
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KB7 QLSLVEADAPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQR--------
       ::::::::.:::::::::::::::::::::::::::::::::::::::::::        
CCDS56 QLSLVEADTPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQREKLIIFSD
              130       140       150       160       170       180

                         180       190       200       210         
pF1KB7 -------------GGLLQFEADKTAKEESLFPVPPSKETSAESQVSENIFQTQPLNPILE
                    :::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 PVPASLNLIPEFAGGLLQFEADKTAKEESLFPVPPSKETSAESQVSENIFQTQPLNPILE
              190       200       210       220       230       240

     220       230       240       250       260       270         
pF1KB7 DDCSSTSGFPTQESFTMASCTSESHSHWVHSPIECTELDLQKFSSSASYTGAETLGGNTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 DDCSSTSGFPTQESFTMASCTSESHSHWVHSPIECTELDLQKFSSSASYTGAETLGGNTV
              250       260       270       280       290       300

     280       290       
pF1KB7 ESTGDRLELNVPFEVPSP
       ::::::::::::::::::
CCDS56 ESTGDRLELNVPFEVPSP
              310        

>>CCDS9301.1 TNFRSF19 gene_id:55504|Hs108|chr13           (417 aa)
 initn: 691 init1: 648 opt: 661  Z-score: 648.2  bits: 128.4 E(32554): 8.7e-30
Smith-Waterman score: 661; 42.4% identity (69.4% similar) in 229 aa overlap (2-223:33-261)

                                            10        20        30 
pF1KB7                              MDCQENEYWDQWGRCVTCQRCGPGQELSKDC
                                     ::...:. :. : :: :..::::.::::.:
CCDS93 LKVLLEQEKTFFTLLVLLGYLSCKVTCESGDCRQQEFRDRSGNCVPCNQCGPGMELSKEC
             10        20        30        40        50        60  

              40        50        60        70        80        90 
pF1KB7 GYGEGGDAYCTACPPRRYKSSWGHHKCQSCITCAVINRVQKVNCTATSNAVCGDCLPRFY
       :.: : :: :..:  .:.: .:: .::. :. :::.:: ::.::.:::.:.:::::: ::
CCDS93 GFGYGEDAQCVTCRLHRFKEDWGFQKCKPCLDCAVVNRFQKANCSATSDAICGDCLPGFY
             70        80        90       100       110       120  

             100       110       120       130       140       150 
pF1KB7 RKTRIGGLQDQECIPCTKQTPTSEVQCAFQLSLVEADAPTVPPQEATLVALVSSLLVVFT
       :::.. :.::.::.::    :  : .:: ...::.  . .  :....:.:.. : :..  
CCDS93 RKTKLVGFQDMECVPCGDPPPPYEPHCASKVNLVKIASTASSPRDTALAAVICSALATVL
            130       140       150       160       170       180  

             160       170       180       190         200         
pF1KB7 LAFLGLFFLYCKQFFNRHCQRGGLLQFEADKTAKEESLFPVPPSKETS--AESQVSENIF
       ::.: :  .:::. : ..    .: . . . ...: : :  :  .: .  :  :  ..  
CCDS93 LALLILCVIYCKRQFMEKKPSWSLRSQDIQYNGSELSCFDRPQLHEYAHRACCQCRRDSV
            190       200       210       220       230       240  

     210            220       230       240       250       260    
pF1KB7 QT-QP--LNPIL--EDDCSSTSGFPTQESFTMASCTSESHSHWVHSPIECTELDLQKFSS
       ::  :  : : .  :. ::                                         
CCDS93 QTCGPVRLLPSMCCEEACSPNPATLGCGVHSAASLQARNAGPAGEMVPTFFGSLTQSICG
            250       260       270       280       290       300  

>>CCDS9302.1 TNFRSF19 gene_id:55504|Hs108|chr13           (423 aa)
 initn: 691 init1: 648 opt: 661  Z-score: 648.1  bits: 128.4 E(32554): 8.8e-30
Smith-Waterman score: 661; 42.4% identity (69.4% similar) in 229 aa overlap (2-223:33-261)

                                            10        20        30 
pF1KB7                              MDCQENEYWDQWGRCVTCQRCGPGQELSKDC
                                     ::...:. :. : :: :..::::.::::.:
CCDS93 LKVLLEQEKTFFTLLVLLGYLSCKVTCESGDCRQQEFRDRSGNCVPCNQCGPGMELSKEC
             10        20        30        40        50        60  

              40        50        60        70        80        90 
pF1KB7 GYGEGGDAYCTACPPRRYKSSWGHHKCQSCITCAVINRVQKVNCTATSNAVCGDCLPRFY
       :.: : :: :..:  .:.: .:: .::. :. :::.:: ::.::.:::.:.:::::: ::
CCDS93 GFGYGEDAQCVTCRLHRFKEDWGFQKCKPCLDCAVVNRFQKANCSATSDAICGDCLPGFY
             70        80        90       100       110       120  

             100       110       120       130       140       150 
pF1KB7 RKTRIGGLQDQECIPCTKQTPTSEVQCAFQLSLVEADAPTVPPQEATLVALVSSLLVVFT
       :::.. :.::.::.::    :  : .:: ...::.  . .  :....:.:.. : :..  
CCDS93 RKTKLVGFQDMECVPCGDPPPPYEPHCASKVNLVKIASTASSPRDTALAAVICSALATVL
            130       140       150       160       170       180  

             160       170       180       190         200         
pF1KB7 LAFLGLFFLYCKQFFNRHCQRGGLLQFEADKTAKEESLFPVPPSKETS--AESQVSENIF
       ::.: :  .:::. : ..    .: . . . ...: : :  :  .: .  :  :  ..  
CCDS93 LALLILCVIYCKRQFMEKKPSWSLRSQDIQYNGSELSCFDRPQLHEYAHRACCQCRRDSV
            190       200       210       220       230       240  

     210            220       230       240       250       260    
pF1KB7 QT-QP--LNPIL--EDDCSSTSGFPTQESFTMASCTSESHSHWVHSPIECTELDLQKFSS
       ::  :  : : .  :. ::                                         
CCDS93 QTCGPVRLLPSMCCEEACSPNPATLGCGVHSAASLQARNAGPAGEMVPTFFGSLTQSICG
            250       260       270       280       290       300  




297 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:28:19 2016 done: Sat Nov  5 18:28:20 2016
 Total Scan time:  2.650 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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