Result of FASTA (omim) for pF1KB0936
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0936, 386 aa
  1>>>pF1KB0936 386 - 386 aa - 386 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9976+/-0.000386; mu= 18.2374+/- 0.024
 mean_var=62.6712+/-12.767, 0's: 0 Z-trim(112.5): 27  B-trim: 744 in 1/51
 Lambda= 0.162009
 statistics sampled from 21376 (21402) to 21376 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.625), E-opt: 0.2 (0.251), width:  16
 Scan time:  8.530

The best scores are:                                      opt bits E(85289)
NP_005495 (OMIM: 113520) branched-chain-amino-acid ( 386) 2634 624.4 1.3e-178
NP_001171564 (OMIM: 113520) branched-chain-amino-a ( 398) 2623 621.9 8.2e-178
NP_001171565 (OMIM: 113520) branched-chain-amino-a ( 385) 2621 621.4 1.1e-177
NP_001171563 (OMIM: 113520) branched-chain-amino-a ( 325) 1759 419.9 4.3e-117
NP_001171562 (OMIM: 113520) branched-chain-amino-a ( 349) 1759 419.9 4.6e-117
XP_016875257 (OMIM: 113520) PREDICTED: branched-ch ( 420) 1759 419.9 5.3e-117
NP_001181 (OMIM: 113530) branched-chain-amino-acid ( 392) 1537 368.0 2.1e-101
NP_001271254 (OMIM: 113530) branched-chain-amino-a ( 352) 1514 362.6 7.9e-100
NP_001158245 (OMIM: 113530) branched-chain-amino-a ( 300) 1285 309.1   9e-84


>>NP_005495 (OMIM: 113520) branched-chain-amino-acid ami  (386 aa)
 initn: 2634 init1: 2634 opt: 2634  Z-score: 3327.4  bits: 624.4 E(85289): 1.3e-178
Smith-Waterman score: 2634; 100.0% identity (100.0% similar) in 386 aa overlap (1-386:1-386)

               10        20        30        40        50        60
pF1KB0 MKDCSNGCSAECTGEGGSKEVVGTFKAKDLIVTPATILKEKPDPNNLVFGTVFTDHMLTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MKDCSNGCSAECTGEGGSKEVVGTFKAKDLIVTPATILKEKPDPNNLVFGTVFTDHMLTV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 EWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 EWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 YRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 YRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 ALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 GCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 WGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 WGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPK
              310       320       330       340       350       360

              370       380      
pF1KB0 LASRILSKLTDIQYGREESDWTIVLS
       ::::::::::::::::::::::::::
NP_005 LASRILSKLTDIQYGREESDWTIVLS
              370       380      

>>NP_001171564 (OMIM: 113520) branched-chain-amino-acid   (398 aa)
 initn: 2623 init1: 2623 opt: 2623  Z-score: 3313.3  bits: 621.9 E(85289): 8.2e-178
Smith-Waterman score: 2623; 99.7% identity (100.0% similar) in 385 aa overlap (2-386:14-398)

                           10        20        30        40        
pF1KB0             MKDCSNGCSAECTGEGGSKEVVGTFKAKDLIVTPATILKEKPDPNNLV
                    .::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASPLRSAAALARQDCSNGCSAECTGEGGSKEVVGTFKAKDLIVTPATILKEKPDPNNLV
               10        20        30        40        50        60

       50        60        70        80        90       100        
pF1KB0 FGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKI
               70        80        90       100       110       120

      110       120       130       140       150       160        
pF1KB0 RLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIG
              130       140       150       160       170       180

      170       180       190       200       210       220        
pF1KB0 TEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYG
              190       200       210       220       230       240

      230       240       250       260       270       280        
pF1KB0 SSLFAQCEAVDNGCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSLFAQCEAVDNGCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPG
              250       260       270       280       290       300

      290       300       310       320       330       340        
pF1KB0 VTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGE
              310       320       330       340       350       360

      350       360       370       380      
pF1KB0 TIHIPTMENGPKLASRILSKLTDIQYGREESDWTIVLS
       ::::::::::::::::::::::::::::::::::::::
NP_001 TIHIPTMENGPKLASRILSKLTDIQYGREESDWTIVLS
              370       380       390        

>>NP_001171565 (OMIM: 113520) branched-chain-amino-acid   (385 aa)
 initn: 2621 init1: 2621 opt: 2621  Z-score: 3311.0  bits: 621.4 E(85289): 1.1e-177
Smith-Waterman score: 2621; 100.0% identity (100.0% similar) in 384 aa overlap (3-386:2-385)

               10        20        30        40        50        60
pF1KB0 MKDCSNGCSAECTGEGGSKEVVGTFKAKDLIVTPATILKEKPDPNNLVFGTVFTDHMLTV
         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001  MDCSNGCSAECTGEGGSKEVVGTFKAKDLIVTPATILKEKPDPNNLVFGTVFTDHMLTV
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB0 EWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRM
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB0 YRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTK
     120       130       140       150       160       170         

              190       200       210       220       230       240
pF1KB0 ALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDN
     180       190       200       210       220       230         

              250       260       270       280       290       300
pF1KB0 GCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQ
     240       250       260       270       280       290         

              310       320       330       340       350       360
pF1KB0 WGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPK
     300       310       320       330       340       350         

              370       380      
pF1KB0 LASRILSKLTDIQYGREESDWTIVLS
       ::::::::::::::::::::::::::
NP_001 LASRILSKLTDIQYGREESDWTIVLS
     360       370       380     

>>NP_001171563 (OMIM: 113520) branched-chain-amino-acid   (325 aa)
 initn: 1759 init1: 1759 opt: 1759  Z-score: 2223.2  bits: 419.9 E(85289): 4.3e-117
Smith-Waterman score: 2127; 89.8% identity (89.8% similar) in 361 aa overlap (26-386:2-325)

               10        20        30        40        50        60
pF1KB0 MKDCSNGCSAECTGEGGSKEVVGTFKAKDLIVTPATILKEKPDPNNLVFGTVFTDHMLTV
                                :::::::::::::::::::::::::::::::::::
NP_001                         MKAKDLIVTPATILKEKPDPNNLVFGTVFTDHMLTV
                                       10        20        30      

               70        80        90       100       110       120
pF1KB0 EWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRM
       :::::::::::::::::::::::::::::::::                           
NP_001 EWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVE---------------------------
         40        50        60                                    

              130       140       150       160       170       180
pF1KB0 YRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTK
                 ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ----------VFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTK
                70        80        90       100       110         

              190       200       210       220       230       240
pF1KB0 ALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDN
     120       130       140       150       160       170         

              250       260       270       280       290       300
pF1KB0 GCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQ
     180       190       200       210       220       230         

              310       320       330       340       350       360
pF1KB0 WGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPK
     240       250       260       270       280       290         

              370       380      
pF1KB0 LASRILSKLTDIQYGREESDWTIVLS
       ::::::::::::::::::::::::::
NP_001 LASRILSKLTDIQYGREESDWTIVLS
     300       310       320     

>>NP_001171562 (OMIM: 113520) branched-chain-amino-acid   (349 aa)
 initn: 1759 init1: 1759 opt: 1759  Z-score: 2222.7  bits: 419.9 E(85289): 4.6e-117
Smith-Waterman score: 2306; 90.4% identity (90.4% similar) in 386 aa overlap (1-386:1-349)

               10        20        30        40        50        60
pF1KB0 MKDCSNGCSAECTGEGGSKEVVGTFKAKDLIVTPATILKEKPDPNNLVFGTVFTDHMLTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKDCSNGCSAECTGEGGSKEVVGTFKAKDLIVTPATILKEKPDPNNLVFGTVFTDHMLTV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 EWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRM
       :::::::::::::::::::::::::::::::::                           
NP_001 EWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVE---------------------------
               70        80        90                              

              130       140       150       160       170       180
pF1KB0 YRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTK
                 ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ----------VFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTK
                     100       110       120       130       140   

              190       200       210       220       230       240
pF1KB0 ALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDN
           150       160       170       180       190       200   

              250       260       270       280       290       300
pF1KB0 GCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQ
           210       220       230       240       250       260   

              310       320       330       340       350       360
pF1KB0 WGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPK
           270       280       290       300       310       320   

              370       380      
pF1KB0 LASRILSKLTDIQYGREESDWTIVLS
       ::::::::::::::::::::::::::
NP_001 LASRILSKLTDIQYGREESDWTIVLS
           330       340         

>>XP_016875257 (OMIM: 113520) PREDICTED: branched-chain-  (420 aa)
 initn: 1759 init1: 1759 opt: 1759  Z-score: 2221.5  bits: 419.9 E(85289): 5.3e-117
Smith-Waterman score: 2295; 90.1% identity (90.4% similar) in 385 aa overlap (2-386:73-420)

                                            10        20        30 
pF1KB0                              MKDCSNGCSAECTGEGGSKEVVGTFKAKDLI
                                     .:::::::::::::::::::::::::::::
XP_016 RSVPLPLSAAPRPRSLPMASPLRSAAALARQDCSNGCSAECTGEGGSKEVVGTFKAKDLI
             50        60        70        80        90       100  

              40        50        60        70        80        90 
pF1KB0 VTPATILKEKPDPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VTPATILKEKPDPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYA
            110       120       130       140       150       160  

             100       110       120       130       140       150 
pF1KB0 VELFEGLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEW
       ::                                     :::::::::::::::::::::
XP_016 VE-------------------------------------VFDKEELLECIQQLVKLDQEW
                                                 170       180     

             160       170       180       190       200       210 
pF1KB0 VPYSTSASLYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VPYSTSASLYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYV
         190       200       210       220       230       240     

             220       230       240       250       260       270 
pF1KB0 RAWKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGEDHQITEVGTMNLFLYWINED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RAWKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGEDHQITEVGTMNLFLYWINED
         250       260       270       280       290       300     

             280       290       300       310       320       330 
pF1KB0 GEEELATPPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GEEELATPPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGS
         310       320       330       340       350       360     

             340       350       360       370       380      
pF1KB0 GTACVVCPVSDILYKGETIHIPTMENGPKLASRILSKLTDIQYGREESDWTIVLS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GTACVVCPVSDILYKGETIHIPTMENGPKLASRILSKLTDIQYGREESDWTIVLS
         370       380       390       400       410       420

>>NP_001181 (OMIM: 113530) branched-chain-amino-acid ami  (392 aa)
 initn: 1427 init1: 1427 opt: 1537  Z-score: 1941.6  bits: 368.0 E(85289): 2.1e-101
Smith-Waterman score: 1537; 58.6% identity (83.7% similar) in 367 aa overlap (16-381:23-388)

                      10        20        30        40         50  
pF1KB0        MKDCSNGCSAECTGEGGSKEVVGTFKAKDLIVTPATILKEKPDPNN-LVFGTV
                             :  . . ..::: :: .  .   ..:: :.. :::: .
NP_001 MAAAALGQIWARKLLSVPWLLCGPRRYASSSFKAADLQLEMTQKPHKKPGPGEPLVFGKT
               10        20        30        40        50        60

             60        70        80        90       100       110  
pF1KB0 FTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQ
       :::::: :::... :: .:.:.:.:::.:::.::.:::...::::.:::.: :...:::.
NP_001 FTDHMLMVEWNDK-GWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFR
               70         80        90       100       110         

            120       130       140       150       160       170  
pF1KB0 PNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPS
       : :::::: :::.:  :: ::: ::::::..:...:..::: ....:::.::..::.:::
NP_001 PWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPS
     120       130       140       150       160       170         

            180       190       200       210       220       230  
pF1KB0 LGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLF
       :::..::.:::::.: ::: :: .:. .:::: :.: ..::: ::.:. :.::::: ...
NP_001 LGVSQPTRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVL
     180       190       200       210       220       230         

            240       250       260       270       280       290  
pF1KB0 AQCEAVDNGCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRR
       .: ::.  ::.::::::: :::.:::::::.:.:: .:::  ::.::::.:.:::::.:.
NP_001 VQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQ
     240       250       260       270       280       290         

            300       310       320       330       340       350  
pF1KB0 CILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHI
        .::.:. ::::.: :: .:: .:  ::: .::::.::::::: ::::  :::: ...::
NP_001 SLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILYKDRNLHI
     300       310       320       330       340       350         

            360       370       380      
pF1KB0 PTMENGPKLASRILSKLTDIQYGREESDWTIVLS
       :::::::.:  :. ..: .:::: .  .:     
NP_001 PTMENGPELILRFQKELKEIQYGIRAHEWMFPV 
     360       370       380       390   

>>NP_001271254 (OMIM: 113530) branched-chain-amino-acid   (352 aa)
 initn: 1487 init1: 1406 opt: 1514  Z-score: 1913.2  bits: 362.6 E(85289): 7.9e-100
Smith-Waterman score: 1514; 60.9% identity (85.7% similar) in 343 aa overlap (40-381:7-348)

      10        20        30        40         50        60        
pF1KB0 AECTGEGGSKEVVGTFKAKDLIVTPATILKEKPDPNN-LVFGTVFTDHMLTVEWSSEFGW
                                     .:: :.. :::: .:::::: :::... ::
NP_001                         MTQKPHKKPGPGEPLVFGKTFTDHMLMVEWNDK-GW
                                       10        20        30      

       70        80        90       100       110       120        
pF1KB0 EKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRMYRSAVRAT
        .:.:.:.:::.:::.::.:::...::::.:::.: :...:::.: :::::: :::.:  
NP_001 GQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLC
          40        50        60        70        80        90     

      130       140       150       160       170       180        
pF1KB0 LPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALLFVLLS
       :: ::: ::::::..:...:..::: ....:::.::..::.::::::..::.:::::.: 
NP_001 LPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPTRALLFVILC
         100       110       120       130       140       150     

      190       200       210       220       230       240        
pF1KB0 PVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQVLWL
       ::: :: .:. .:::: :.: ..::: ::.:. :.::::: ....: ::.  ::.:::::
NP_001 PVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWL
         160       170       180       190       200       210     

      250       260       270       280       290       300        
pF1KB0 YGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQWGEFKVSE
       :: :::.:::::::.:.:: .:::  ::.::::.:.:::::.:. .::.:. ::::.: :
NP_001 YGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVE
         220       230       240       250       260       270     

      310       320       330       340       350       360        
pF1KB0 RYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPKLASRILSK
       : .:: .:  ::: .::::.::::::: ::::  :::: ...:::::::::.:  :. ..
NP_001 RTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILYKDRNLHIPTMENGPELILRFQKE
         280       290       300       310       320       330     

      370       380      
pF1KB0 LTDIQYGREESDWTIVLS
       : .:::: .  .:     
NP_001 LKEIQYGIRAHEWMFPV 
         340       350   

>>NP_001158245 (OMIM: 113530) branched-chain-amino-acid   (300 aa)
 initn: 1274 init1: 1274 opt: 1285  Z-score: 1624.9  bits: 309.1 E(85289): 9e-84
Smith-Waterman score: 1285; 61.2% identity (85.1% similar) in 289 aa overlap (93-381:8-296)

             70        80        90       100       110       120  
pF1KB0 SSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRMYR
                                     .::::.:::.: :...:::.: :::::: :
NP_001                        MAAAALGQLFEGMKAFKGKDQQVRLFRPWLNMDRMLR
                                      10        20        30       

            130       140       150       160       170       180  
pF1KB0 SAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKAL
       ::.:  :: ::: ::::::..:...:..::: ....:::.::..::.::::::..::.::
NP_001 SAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPTRAL
        40        50        60        70        80        90       

            190       200       210       220       230       240  
pF1KB0 LFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDNGC
       :::.: ::: :: .:. .:::: :.: ..::: ::.:. :.::::: ....: ::.  ::
NP_001 LFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGC
       100       110       120       130       140       150       

            250       260       270       280       290       300  
pF1KB0 QQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQWG
       .::::::: :::.:::::::.:.:: .:::  ::.::::.:.:::::.:. .::.:. ::
NP_001 EQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWG
       160       170       180       190       200       210       

            310       320       330       340       350       360  
pF1KB0 EFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPKLA
       ::.: :: .:: .:  ::: .::::.::::::: ::::  :::: ...:::::::::.: 
NP_001 EFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILYKDRNLHIPTMENGPELI
       220       230       240       250       260       270       

            370       380      
pF1KB0 SRILSKLTDIQYGREESDWTIVLS
        :. ..: .:::: .  .:     
NP_001 LRFQKELKEIQYGIRAHEWMFPV 
       280       290       300 




386 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:52:22 2016 done: Sat Nov  5 17:52:23 2016
 Total Scan time:  8.530 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com