Result of FASTA (omim) for pF1KB7590
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7590, 290 aa
  1>>>pF1KB7590 290 - 290 aa - 290 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9124+/-0.000304; mu= 7.6287+/- 0.019
 mean_var=229.6820+/-46.426, 0's: 0 Z-trim(124.5): 246  B-trim: 47 in 1/61
 Lambda= 0.084627
 statistics sampled from 46154 (46451) to 46154 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.828), E-opt: 0.2 (0.545), width:  16
 Scan time:  9.390

The best scores are:                                      opt bits E(85289)
NP_036608 (OMIM: 604295) ventral anterior homeobox ( 290) 1940 248.5 1.1e-65
XP_006712045 (OMIM: 604295) PREDICTED: ventral ant ( 150)  984 131.5 9.7e-31
XP_011531052 (OMIM: 604295) PREDICTED: ventral ant ( 150)  984 131.5 9.7e-31
XP_011531053 (OMIM: 604295) PREDICTED: ventral ant ( 150)  984 131.5 9.7e-31
NP_001106175 (OMIM: 604294,614402) ventral anterio ( 334)  739 102.0 1.7e-21
NP_954582 (OMIM: 604294,614402) ventral anterior h ( 186)  488 71.0 1.9e-12
NP_001980 (OMIM: 142996) homeobox even-skipped hom ( 407)  293 47.6 4.7e-05
NP_001291448 (OMIM: 142996) homeobox even-skipped  ( 225)  287 46.6 5.3e-05
NP_001291449 (OMIM: 142996) homeobox even-skipped  ( 225)  287 46.6 5.3e-05
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255)  282 46.0 8.8e-05
NP_001418 (OMIM: 131310) homeobox protein engraile ( 333)  284 46.4 8.9e-05
NP_006875 (OMIM: 602504) short stature homeobox pr ( 331)  280 45.9 0.00012
NP_001157150 (OMIM: 602504) short stature homeobox ( 319)  274 45.2  0.0002
NP_001180 (OMIM: 602183,613330) homeobox protein N ( 333)  271 44.8 0.00027
NP_005211 (OMIM: 104510,190320,600525) homeobox pr ( 287)  269 44.5 0.00029
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299)  269 44.5 0.00029
NP_001417 (OMIM: 131290) homeobox protein engraile ( 392)  271 44.9  0.0003
NP_061815 (OMIM: 142992,612109) homeobox protein H ( 348)  269 44.6 0.00033
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358)  269 44.6 0.00033
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358)  269 44.6 0.00033
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430)  269 44.7 0.00037
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431)  269 44.7 0.00038
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  269 44.7 0.00038
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  269 44.7 0.00038
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  269 44.7 0.00038
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  269 44.7 0.00038
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  269 44.7 0.00038
XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488)  269 44.8 0.00041
NP_004089 (OMIM: 269160,600035) homeobox protein E ( 252)  263 43.7 0.00044
XP_016880050 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  269 44.8 0.00046
XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  269 44.8 0.00046
XP_016880052 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  269 44.8 0.00046
XP_011523009 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  269 44.8 0.00046
XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  269 44.8 0.00046
XP_016880049 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  269 44.8 0.00046
XP_016880046 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  269 44.8 0.00046
XP_016880051 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  269 44.8 0.00046
NP_064448 (OMIM: 605211) barH-like 1 homeobox prot ( 327)  263 43.8 0.00052
XP_011530999 (OMIM: 600034) PREDICTED: homeobox pr ( 119)  255 42.4 0.00052
NP_006252 (OMIM: 262600,601538) homeobox protein p ( 226)  259 43.2 0.00057
NP_703149 (OMIM: 300154) homeobox protein ESX1 [Ho ( 406)  261 43.7 0.00071
NP_055283 (OMIM: 607158) homeobox protein VENTX [H ( 258)  256 42.9  0.0008
NP_004088 (OMIM: 600034) homeobox protein EMX1 [Ho ( 290)  255 42.8 0.00094
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270)  252 42.4  0.0012
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264)  250 42.1  0.0013
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264)  250 42.1  0.0013
NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346)  252 42.5  0.0014
XP_016871562 (OMIM: 607158) PREDICTED: homeobox pr ( 189)  242 41.0  0.0021
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  247 42.0  0.0024
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  247 42.0  0.0024


>>NP_036608 (OMIM: 604295) ventral anterior homeobox 2 [  (290 aa)
 initn: 1940 init1: 1940 opt: 1940  Z-score: 1300.2  bits: 248.5 E(85289): 1.1e-65
Smith-Waterman score: 1940; 100.0% identity (100.0% similar) in 290 aa overlap (1-290:1-290)

               10        20        30        40        50        60
pF1KB7 MGDGGAERDRGPARRAESGGGGGRCGDRSGAGDLRADGGGHSPTEVAGTSASSPAGSRES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MGDGGAERDRGPARRAESGGGGGRCGDRSGAGDLRADGGGHSPTEVAGTSASSPAGSRES
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GADSDGQPGPGEADHCRRILVRDAKGTIREIVLPKGLDLDRPKRTRTSFTAEQLYRLEME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 GADSDGQPGPGEADHCRRILVRDAKGTIREIVLPKGLDLDRPKRTRTSFTAEQLYRLEME
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQSRDLEKRASSSASEAFATS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 FQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQSRDLEKRASSSASEAFATS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 NILRLLEQGRLLSVPRAPSLLALTPSLPGLPASHRGTSLGDPRNSSPRLNPLSSASASPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 NILRLLEQGRLLSVPRAPSLLALTPSLPGLPASHRGTSLGDPRNSSPRLNPLSSASASPP
              190       200       210       220       230       240

              250       260       270       280       290
pF1KB7 LPPPLPAVCFSSAPLLDLPAGYELGSSAFEPYSWLERKVGSASSCKKANT
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 LPPPLPAVCFSSAPLLDLPAGYELGSSAFEPYSWLERKVGSASSCKKANT
              250       260       270       280       290

>>XP_006712045 (OMIM: 604295) PREDICTED: ventral anterio  (150 aa)
 initn: 984 init1: 984 opt: 984  Z-score: 672.8  bits: 131.5 E(85289): 9.7e-31
Smith-Waterman score: 984; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)

               10        20        30        40        50        60
pF1KB7 MGDGGAERDRGPARRAESGGGGGRCGDRSGAGDLRADGGGHSPTEVAGTSASSPAGSRES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MGDGGAERDRGPARRAESGGGGGRCGDRSGAGDLRADGGGHSPTEVAGTSASSPAGSRES
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GADSDGQPGPGEADHCRRILVRDAKGTIREIVLPKGLDLDRPKRTRTSFTAEQLYRLEME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GADSDGQPGPGEADHCRRILVRDAKGTIREIVLPKGLDLDRPKRTRTSFTAEQLYRLEME
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQSRDLEKRASSSASEAFATS
       :::::::::::::::::::::::::                                   
XP_006 FQRCQYVVGRERTELARQLNLSETQNQPQS                              
              130       140       150                              

>>XP_011531052 (OMIM: 604295) PREDICTED: ventral anterio  (150 aa)
 initn: 984 init1: 984 opt: 984  Z-score: 672.8  bits: 131.5 E(85289): 9.7e-31
Smith-Waterman score: 984; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)

               10        20        30        40        50        60
pF1KB7 MGDGGAERDRGPARRAESGGGGGRCGDRSGAGDLRADGGGHSPTEVAGTSASSPAGSRES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MGDGGAERDRGPARRAESGGGGGRCGDRSGAGDLRADGGGHSPTEVAGTSASSPAGSRES
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GADSDGQPGPGEADHCRRILVRDAKGTIREIVLPKGLDLDRPKRTRTSFTAEQLYRLEME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GADSDGQPGPGEADHCRRILVRDAKGTIREIVLPKGLDLDRPKRTRTSFTAEQLYRLEME
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQSRDLEKRASSSASEAFATS
       :::::::::::::::::::::::::                                   
XP_011 FQRCQYVVGRERTELARQLNLSETQNQPQS                              
              130       140       150                              

>>XP_011531053 (OMIM: 604295) PREDICTED: ventral anterio  (150 aa)
 initn: 984 init1: 984 opt: 984  Z-score: 672.8  bits: 131.5 E(85289): 9.7e-31
Smith-Waterman score: 984; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)

               10        20        30        40        50        60
pF1KB7 MGDGGAERDRGPARRAESGGGGGRCGDRSGAGDLRADGGGHSPTEVAGTSASSPAGSRES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MGDGGAERDRGPARRAESGGGGGRCGDRSGAGDLRADGGGHSPTEVAGTSASSPAGSRES
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GADSDGQPGPGEADHCRRILVRDAKGTIREIVLPKGLDLDRPKRTRTSFTAEQLYRLEME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GADSDGQPGPGEADHCRRILVRDAKGTIREIVLPKGLDLDRPKRTRTSFTAEQLYRLEME
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQSRDLEKRASSSASEAFATS
       :::::::::::::::::::::::::                                   
XP_011 FQRCQYVVGRERTELARQLNLSETQNQPQS                              
              130       140       150                              

>>NP_001106175 (OMIM: 604294,614402) ventral anterior ho  (334 aa)
 initn: 691 init1: 598 opt: 739  Z-score: 507.0  bits: 102.0 E(85289): 1.7e-21
Smith-Waterman score: 747; 57.6% identity (71.0% similar) in 245 aa overlap (45-268:46-285)

           20        30        40        50        60        70    
pF1KB7 RAESGGGGGRCGDRSGAGDLRADGGGHSPTEVAGTSASSPAGSRESGADSDGQPGPGEAD
                                     :  :. ..: :.   . . :..   :   :
NP_001 AEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAEDCNKSKSNSAADP---D
          20        30        40        50        60        70     

           80        90       100       110       120       130    
pF1KB7 HCRRILVRDAKGTIREIVLPKGLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTE
       .:::::::::::.::::.::::::::::::::::::::::::::::::::::::::::::
NP_001 YCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTE
             80        90       100       110       120       130  

          140       150       160       170       180       190    
pF1KB7 LARQLNLSETQVKVWFQNRRTKQKKDQSRDLEKRASSSASEAFATSNILRLLEQGRLLSV
       :::::::::::::::::::::::::::..: : :  : .::. :: ..::::::::::: 
NP_001 LARQLNLSETQVKVWFQNRRTKQKKDQGKDSELR--SVVSETAATCSVLRLLEQGRLLSP
            140       150       160         170       180       190

          200               210       220        230       240     
pF1KB7 PRAPSLL------ALTPSL--PGLPASHRGTSLGDPRNSSPRL-NPLSSASASPPL----
       :  :.::      ::  .:  :.:::   :.. :.   ..    .: ..::  ::     
NP_001 PGLPALLPPCATGALGSALRGPSLPALGAGAAAGSAAAAAAAAPGPAGAASPHPPAVGGA
              200       210       220       230       240       250

                250            260       270       280       290   
pF1KB7 PPPLPAV---CFSSAP-----LLDLPAGYELGSSAFEPYSWLERKVGSASSCKKANT   
       : : ::      ..::     :..::.   ::: :                         
NP_001 PGPGPAGPGGLHAGAPAAGHSLFSLPVPSLLGSVASRLSSAPLTMAGSLAGNLQELSARY
              260       270       280       290       300       310

NP_001 LSSSAFEPYSRTNNKEGAEKKALD
              320       330    

>>NP_954582 (OMIM: 604294,614402) ventral anterior homeo  (186 aa)
 initn: 508 init1: 461 opt: 488  Z-score: 344.4  bits: 71.0 E(85289): 1.9e-12
Smith-Waterman score: 488; 62.6% identity (80.2% similar) in 131 aa overlap (45-174:46-173)

           20        30        40        50        60        70    
pF1KB7 RAESGGGGGRCGDRSGAGDLRADGGGHSPTEVAGTSASSPAGSRESGADSDGQPGPGEAD
                                     :  :. ..: :.   . . :..   :   :
NP_954 AEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAEDCNKSKSNSAADP---D
          20        30        40        50        60        70     

           80        90       100       110       120       130    
pF1KB7 HCRRILVRDAKGTIREIVLPKGLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTE
       .:::::::::::.::::.::::::::::::::::::::::::::::::::::::::::::
NP_954 YCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTE
             80        90       100       110       120       130  

          140       150        160       170       180       190   
pF1KB7 LARQLNLSETQVKVWFQNRRTKQK-KDQSRDLEKRASSSASEAFATSNILRLLEQGRLLS
       :::::::::::..   .:.: :.  : :..  .:. ... :                   
NP_954 LARQLNLSETQANSEENNERFKRGIKKQKKKRKKEPANDESRRGDSGGRGWQPL      
            140       150       160       170       180            

           200       210       220       230       240       250   
pF1KB7 VPRAPSLLALTPSLPGLPASHRGTSLGDPRNSSPRLNPLSSASASPPLPPPLPAVCFSSA

>>NP_001980 (OMIM: 142996) homeobox even-skipped homolog  (407 aa)
 initn: 333 init1: 215 opt: 293  Z-score: 211.7  bits: 47.6 E(85289): 4.7e-05
Smith-Waterman score: 302; 34.1% identity (50.2% similar) in 317 aa overlap (12-283:55-358)

                                  10        20        30         40
pF1KB7                    MGDGGAERDRGPARRAESGGGGGRCGDRSG-AGDLRADGGG
                                     :: : : :::: .    .: ::.  : : :
NP_001 SNLSEAVGSPLPEPPEKMVPRGCLSPRAVPPATR-ERGGGGPEEEPVDGLAGS--AAGPG
           30        40        50         60        70          80 

               50        60           70          80               
pF1KB7 HSPTEVAGTSASSPAGSRESGADS---DGQPGPG--EADHCRRILV-------------R
         : .:::..  .: :    ..::   .:::. .  :.:  ..: :             .
NP_001 AEP-QVAGAAMLGP-GPPAPSVDSLSGQGQPSSSDTESDFYEEIEVSCTPDCATGNAEYQ
               90        100       110       120       130         

             90                               100       110        
pF1KB7 DAKGTIREIVL--PKGLDL----------------------DRPKRTRTSFTAEQLYRLE
        .::.  : ..  :.: .                       :. .: ::.:: ::. :::
NP_001 HSKGSGSEALVGSPNGGSETPKSNGGSGGGGSQGTLACSASDQMRRYRTAFTREQIARLE
     140       150       160       170       180       190         

      120       130       140       150       160       170        
pF1KB7 MEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQSRDLEKRASSSASEAFA
        :: : .::   .: :::  ::: :: .:::::::: :.:...   :       :. :: 
NP_001 KEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQR---LAMTWPHPADPAFY
     200       210       220       230       240          250      

      180       190       200        210       220       230       
pF1KB7 TSNILRLLEQGRLLSVPRAPSLLALTPSLP-GLPASHRGTSLGDPRNSSPRLNPLSSASA
       :  . .    : :   :  :: : :    : :: :.  ... ..: ..:  : ::..  .
NP_001 TYMMSHAAAAGGL-PYPF-PSHLPLPYYSPVGLGAASAASAAASPFSGS--LRPLDTFRV
        260        270        280       290       300         310  

        240       250       260       270       280       290      
pF1KB7 -SPPLPPPLPAVCFSSAPLLDLPAGYELGSSAFEPYSWLERKVGSASSCKKANT      
        : : : :     :   ::   :: . ::.::  : : :  . : :.             
NP_001 LSQPYPRPELLCAFRHPPLYPGPA-HGLGASAGGPCSCLACHSGPANGLAPRAAAASDFT
            320       330        340       350       360       370 

NP_001 CASTSRSDSFLTFAPSVLSKASSVALDQREEVPLTR
             380       390       400       

>>NP_001291448 (OMIM: 142996) homeobox even-skipped homo  (225 aa)
 initn: 227 init1: 209 opt: 287  Z-score: 210.8  bits: 46.6 E(85289): 5.3e-05
Smith-Waterman score: 287; 39.9% identity (55.2% similar) in 183 aa overlap (103-283:2-176)

             80        90       100       110       120       130  
pF1KB7 ADHCRRILVRDAKGTIREIVLPKGLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRER
                                     .: ::.:: ::. ::: :: : .::   .:
NP_001                              MRRYRTAFTREQIARLEKEFYRENYVSRPRR
                                            10        20        30 

            140       150       160       170       180       190  
pF1KB7 TELARQLNLSETQVKVWFQNRRTKQKKDQSRDLEKRASSSASEAFATSNILRLLEQGRLL
        :::  ::: :: .:::::::: :.:...   :       :. :: :  . .    : : 
NP_001 CELAAALNLPETTIKVWFQNRRMKDKRQR---LAMTWPHPADPAFYTYMMSHAAAAGGL-
              40        50        60           70        80        

            200        210       220       230        240       250
pF1KB7 SVPRAPSLLALTPSLP-GLPASHRGTSLGDPRNSSPRLNPLSSASA-SPPLPPPLPAVCF
         :  :: : :    : :: :.  ... ..: ..:  : ::..  . : : : :     :
NP_001 PYPF-PSHLPLPYYSPVGLGAASAASAAASPFSGS--LRPLDTFRVLSQPYPRPELLCAF
        90        100       110       120         130       140    

              260       270       280       290                    
pF1KB7 SSAPLLDLPAGYELGSSAFEPYSWLERKVGSASSCKKANT                    
          ::   :: . ::.::  : : :  . : :.                           
NP_001 RHPPLYPGPA-HGLGASAGGPCSCLACHSGPANGLAPRAAAASDFTCASTSRSDSFLTFA
          150        160       170       180       190       200   

NP_001 PSVLSKASSVALDQREEVPLTR
           210       220     

>>NP_001291449 (OMIM: 142996) homeobox even-skipped homo  (225 aa)
 initn: 227 init1: 209 opt: 287  Z-score: 210.8  bits: 46.6 E(85289): 5.3e-05
Smith-Waterman score: 287; 39.9% identity (55.2% similar) in 183 aa overlap (103-283:2-176)

             80        90       100       110       120       130  
pF1KB7 ADHCRRILVRDAKGTIREIVLPKGLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRER
                                     .: ::.:: ::. ::: :: : .::   .:
NP_001                              MRRYRTAFTREQIARLEKEFYRENYVSRPRR
                                            10        20        30 

            140       150       160       170       180       190  
pF1KB7 TELARQLNLSETQVKVWFQNRRTKQKKDQSRDLEKRASSSASEAFATSNILRLLEQGRLL
        :::  ::: :: .:::::::: :.:...   :       :. :: :  . .    : : 
NP_001 CELAAALNLPETTIKVWFQNRRMKDKRQR---LAMTWPHPADPAFYTYMMSHAAAAGGL-
              40        50        60           70        80        

            200        210       220       230        240       250
pF1KB7 SVPRAPSLLALTPSLP-GLPASHRGTSLGDPRNSSPRLNPLSSASA-SPPLPPPLPAVCF
         :  :: : :    : :: :.  ... ..: ..:  : ::..  . : : : :     :
NP_001 PYPF-PSHLPLPYYSPVGLGAASAASAAASPFSGS--LRPLDTFRVLSQPYPRPELLCAF
        90        100       110       120         130       140    

              260       270       280       290                    
pF1KB7 SSAPLLDLPAGYELGSSAFEPYSWLERKVGSASSCKKANT                    
          ::   :: . ::.::  : : :  . : :.                           
NP_001 RHPPLYPGPA-HGLGASAGGPCSCLACHSGPANGLAPRAAAASDFTCASTSRSDSFLTFA
          150        160       170       180       190       200   

NP_001 PSVLSKASSVALDQREEVPLTR
           210       220     

>>NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [Homo  (255 aa)
 initn: 268 init1: 236 opt: 282  Z-score: 206.8  bits: 46.0 E(85289): 8.8e-05
Smith-Waterman score: 282; 35.4% identity (56.9% similar) in 181 aa overlap (9-182:56-235)

                                     10        20        30        
pF1KB7                       MGDGGAERDRGPARRAESGGGGGRCGDRSGAGDLRADG
                                     : :    . :: : :      : :.  .  
NP_055 GGYLGEQGADYYGGGAQGADFQPPGLYPRPDFGEQPFGGSGPGPGSALPARGHGQEPGGP
          30        40        50        60        70        80     

       40           50           60        70        80        90  
pF1KB7 GGH--SPTE-VAGTSASSPA---GSRESGADSDGQPGPGEADHCRRILVRDAKGTIREIV
       :::  .: :   .  :  ::   :.:  . ..  ::  : : .   ..    : .  . :
NP_055 GGHYAAPGEPCPAPPAPPPAPLPGARAYSQSDPKQPPSGTALKQPAVVYPWMKKVHVNSV
          90       100       110       120       130       140     

            100       110       120       130       140       150  
pF1KB7 LPKGLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQN
        :.     .:::.::..: .:. .:: ::.  .:.. :.: :.:. : ::: :.:.::::
NP_055 NPNYTG-GEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQN
         150        160       170       180       190       200    

            160        170       180       190       200       210 
pF1KB7 RRTKQKKDQSRDLEK-RASSSASEAFATSNILRLLEQGRLLSVPRAPSLLALTPSLPGLP
       :: : :::..    : :.:::.: .  .:..                             
NP_055 RRMKWKKDHKLPNTKGRSSSSSSSSSCSSSVAPSQHLQPMAKDHHTDLTTL         
          210       220       230       240       250              

             220       230       240       250       260       270 
pF1KB7 ASHRGTSLGDPRNSSPRLNPLSSASASPPLPPPLPAVCFSSAPLLDLPAGYELGSSAFEP




290 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:47:27 2016 done: Sat Nov  5 17:47:28 2016
 Total Scan time:  9.390 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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