GENSCAN 1.0	Date run:  5-Nov-116	Time: 17:38:29

Sequence gi568815575r:48087634_48295358 : 207725 bp : 44.58% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.00 Prom +  13307  13346   40                              -1.46
 1.01 Init +  14735  14805   71  1  2   53   48    87 0.391   1.72
 1.02 Intr +  22295  22415  121  2  1  115  100   123 0.934  16.70
 1.03 Intr +  22850  22964  115  1  1   93   60   152 0.999  12.92
 1.04 Intr +  23627  23722   96  0  0   98   96   121 0.933  13.88
 1.05 Intr +  25560  25609   50  1  2   37  113    36 0.546  -0.60
 1.06 Intr +  29379  29514  136  2  1   46   99   130 0.329  10.04
 1.07 Intr +  31901  31997   97  0  1   90   32   112 0.729   4.87
 1.08 Term +  32467  32593  127  1  1   95   48    70 0.377   1.46
 1.09 PlyA +  33034  33039    6                               1.05

 2.00 Prom +  37296  37335   40                              -7.76
 2.01 Init +  43055  43199  145  1  1   86   37   334 0.989  28.38
 2.02 Intr +  43628  43786  159  0  0  115  115   211 0.997  26.46
 2.03 Intr +  44617  44695   79  2  1  127  119    84 0.811  14.01
 2.04 Intr +  70246  70381  136  1  1  117  100    71 0.971  11.77
 2.05 Term +  70815  70889   75  2  0  114   43   108 0.993   6.74
 2.06 PlyA +  71614  71619    6                               1.05

 3.03 PlyA -  73593  73588    6                               1.05
 3.02 Term -  75593  75487  107  0  2   70   48   115 0.911   4.27
 3.01 Init -  78195  78105   91  0  1  103  106    40 0.940   8.19
 3.00 Prom -  85509  85470   40                              -2.46

 4.09 PlyA -  86131  86126    6                               1.05
 4.08 Term - 100098  99998  101  1  2   82   35   103 0.107   2.69
 4.07 Intr - 102635 102500  136  2  1   36   99   114 0.965   7.44
 4.06 Intr - 104729 104599  131  0  2   47  113    -3 0.578  -1.49
 4.05 Intr - 106591 106496   96  2  0   94   96    74 0.986   8.78
 4.04 Intr - 107221 107107  115  1  1  108   60   178 0.999  17.02
 4.03 Intr - 107745 107657   89  1  2   73  100    83 0.796   7.69
 4.02 Intr - 111212 111044  169  2  1   84  110    87 0.873  10.02
 4.01 Init - 112577 112464  114  2  0   91   93    67 0.923   7.71
 4.00 Prom - 124720 124681   40                              -1.86

 5.06 PlyA - 125441 125436    6                               1.05
 5.05 Term - 128019 127741  279  0  0  -12   48   248 0.144   6.25
 5.04 Intr - 129260 129192   69  2  0   94   69    42 0.164   2.28
 5.03 Intr - 129446 129352   95  0  2   63   84    40 0.197   0.78
 5.02 Intr - 129713 129585  129  0  0  109   70     1 0.098   1.07
 5.01 Init - 129863 129764  100  2  1  103   73    49 0.206   5.63
 5.00 Prom - 145176 145137   40                              -2.46

 6.05 PlyA - 145944 145939    6                               1.05
 6.04 Term - 150282 150178  105  0  0   68   41    92 0.777   0.91
 6.03 Intr - 156042 155954   89  1  2   92  100    93 0.911  10.59
 6.02 Intr - 157508 157218  291  0  0   90  110   148 0.526  14.31
 6.01 Init - 159584 159437  148  2  1   90   -4    98 0.271   1.05
 6.00 Prom - 162719 162680   40                              -4.76

 7.00 Prom + 165124 165163   40                              -4.26
 7.01 Init + 169453 169460    8  0  2   56  115     4 0.303   0.11
 7.02 Intr + 169542 169677  136  0  1  109   61   106 0.898  10.57
 7.03 Intr + 170113 170227  115  0  1   96   60   120 0.987  10.02
 7.04 Intr + 170903 170998   96  0  0   98   96    61 0.750   7.88
 7.05 Intr + 174133 174182   50  2  2   49  113    22 0.218  -0.80
 7.06 Term + 176149 176298  150  0  0   28   34   142 0.253   0.71
 7.07 PlyA + 176539 176544    6                               1.05

 8.07 PlyA - 176865 176860    6                               1.05
 8.06 Term - 177002 176896  107  0  2   57   49   145 0.606   6.07
 8.05 Intr - 179136 179008  129  1  0  100   70    23 0.509   2.37
 8.04 Intr - 180814 180722   93  2  0   52   66    77 0.010   1.84
 8.03 Intr - 189170 189075   96  0  0   94   96    23 0.411   3.68
 8.02 Intr - 189443 189329  115  2  1  103   60   153 0.690  14.02
 8.01 Intr - 190012 189877  136  0  1  117  100    55 0.845  10.17

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  66979  67124  146  0  2   79   41    92 0.827   3.19
S.002 Init -  93548  93507   42  2  0   95  116    27 0.823   6.63


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815575r:48087634_48295358|GENSCAN_predicted_peptide_1|270_aa
MIGSFLKPSLEADAGAMLAQSAELTGKTQAVSLAGQSAPGAMNGDDAFAKRPRDDAKASE
KRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTKLGFNVTLSLFMRNKRATDS
QRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEGSDSKGVPEASGPQNDGKKL
CPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEISDPEEDDNLRDTTHAHDEK
QNVVTFHERGHGCGPLVIRCIASESKCSQQ

>gi568815575r:48087634_48295358|GENSCAN_predicted_CDS_1|813_bp
atgattggaagcttcctgaagccctcactagaagcagatgctggtgctatgcttgcacag
tctgcagaactgactggaaagactcaggctgtttctcttgcaggtcagagtgctcctggt
gccatgaacggagacgacgcctttgcaaagagacccagggatgatgctaaagcatcagag
aagagaagcaaggccttcgatgatattgccaaatacttctctaaggaagagtgggaaaag
atgaaattctcggagaaaatcagctgtgtgcatatgaagagaaagtatgaggccatgact
aaactaggtttcaacgtcaccctctcacttttcatgcgtaataaacgggccacagactct
cagaggaatgattctgataatgaccgtaaccgtgggaatgaggttgaacgtcctcagatg
acttttggcaggctccagagaatcatcccgaagatcatgcccgagaagccagcagaggaa
ggaagtgattcgaagggagtgccagaagcatctggcccacagaacgatgggaaaaagctg
tgcccgccgggaaaagcaagtagctctgagaagattcacgagagatctggacccaaaagg
gggaaacatgcctggacccacagactgcgtgagagaaagcagctggtgatttatgaagag
atcagcgaccctgaggaagatgacaacctcagggatacgacacatgcccatgatgagaag
cagaacgtggtgacctttcacgaacgtgggcatggctgcggacccctcgtcatcaggtgt
atagcaagtgaaagcaagtgttcacaacagtga

>gi568815575r:48087634_48295358|GENSCAN_predicted_peptide_2|197_aa
MKAWGTVVVTLATLMVVTVDAKIYERCELAARLERAGLNGYKGYGVGDWLCMAHYESGFD
TAFVDHNPDGSSEYGIFQLNSAWWCDNGITPTKNLCHMDCHDLLNRHILDDIRCAKQIVS
SQNGLSAWTKGPAAGKTQAVSLAGQIAPSATNGDDAFARRPRVGSQIPENMQKVFDDIAK
YFSKKECEKTKAWEKII

>gi568815575r:48087634_48295358|GENSCAN_predicted_CDS_2|594_bp
atgaaggcctggggcactgtggtagtgaccttggccacgctgatggttgtcactgtggat
gccaagatctatgaacgctgcgagctggcggcaagactggagagagcagggctgaacggc
tacaagggctacggcgttggagactggctgtgcatggctcattatgagagtggctttgac
accgccttcgtggaccacaatcctgatggcagcagtgaatatggcattttccaactgaat
tctgcctggtggtgtgacaatggcattacacccaccaagaacctctgccacatggattgt
catgacctgctcaatcgccatattctggatgacatcaggtgtgccaagcagattgtgtcc
tcacagaatgggctttctgcctggaccaaaggtcctgcagctggaaagactcaggctgtt
tctcttgcaggtcagattgctcccagtgccacgaatggagacgacgcctttgcaaggaga
cccagggttggttctcaaataccagagaacatgcaaaaggtcttcgatgatattgccaaa
tatttctctaagaaagaatgcgaaaagacgaaagcctgggagaaaatcatctag

>gi568815575r:48087634_48295358|GENSCAN_predicted_peptide_3|65_aa
MPMFVKGHHILLLIMGMCHIPEAEARGEKERTATATPPFSNHHLDQPAAINTEARPSTSK
KSVTY

>gi568815575r:48087634_48295358|GENSCAN_predicted_CDS_3|198_bp
atgcccatgttcgtgaaaggtcaccacattctgcttctcatcatgggcatgtgtcatatc
cctgaggctgaggcaagaggagagaaggaaagaactgccacagccactccacccttcagc
aaccaccaccttgatcagccagcagccatcaacactgaggcaagaccctccaccagtaaa
aagagtgtgacttactga

>gi568815575r:48087634_48295358|GENSCAN_predicted_peptide_4|316_aa
MRYHYTLITIAKIKDIVTTPNGDKDAEKMDTSLSAAGKRHRHRVSAPRKGLSKEDYIRSD
IFMINSQPSTSSGQSYVYFISNEQNQAGSTRWDEGQSAPGAMNGDDAFVRRPRVGSQIPE
KMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTKLGFKATLPPFMRNKRVADF
QGNDFDNDPNRGNQECPHATEVSLEFGNLYQQRKILMYSLSVEHPQMTFGRLQGIFPKIT
PEKPAEEGNDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERK
QLVIYEEISDPQEDDE

>gi568815575r:48087634_48295358|GENSCAN_predicted_CDS_4|951_bp
atgaggtatcactacacacttattacaatagctaaaataaaagacatagtgacaacacca
aatggtgacaaggatgcagagaaaatggacacctcattaagtgctgctgggaagcgccac
cgacacagagtgtcagcccccagaaagggcctttccaaggaggactatatcaggtctgac
attttcatgatcaacagccagccatctaccagttctggccaatcctatgtgtatttcatc
agcaatgaacagaaccaagctgggagcacgagatgggatgagggacagagtgctcccggt
gccatgaacggagacgatgcctttgtacggagacctagggttggttctcaaataccagag
aagatgcaaaaggccttcgatgatattgccaaatacttctctgagaaagagtgggaaaag
atgaaagcctcggagaaaatcatctatgtgtatatgaagagaaagtatgaggccatgact
aaactaggtttcaaggccaccctcccacctttcatgcgtaataaacgggtcgcagacttc
caggggaatgattttgataatgaccctaaccgtgggaatcaggaatgccctcatgcaact
gaagtctctctagagtttggaaatctttaccaacaaagaaaaattctgatgtattctctt
tcagttgaacatcctcagatgactttcggcaggctccagggaatcttcccgaagatcacg
cccgagaagccagcagaggaaggaaatgattcgaagggagtgccagaagcatctggccca
cagaacaatgggaaacagctgcgcccctcaggaaaactaaatacctctgagaaggttaac
aagacatctggacccaaaagggggaaacatgcctggacccacagagtgcgtgagagaaag
caactggtgatttatgaagagatcagcgaccctcaggaagatgacgagtaa

>gi568815575r:48087634_48295358|GENSCAN_predicted_peptide_5|223_aa
MPMFVKGHHILLLIMGMCHIPEAEARREKEISGNPAHSDSVLPQDLHMASTVPRSEPSAH
ATVTSLPGLSIPRLEEENYEKGMIWGISDKIGYQYHNRIASTSAGMWRSVDPGMFPSFGS
YDGEELEDKSWSKTRTLFKSMKAERGEEAAGETCEASRGWFMRFKERSCLHNIKVQGEAA
NPDGEAAASYPEDLAKVTDEGGYTKEQIFNTDKIAFYIEEDAI

>gi568815575r:48087634_48295358|GENSCAN_predicted_CDS_5|672_bp
atgcccatgttcgtgaaaggtcaccacattctgcttctcatcatgggcatgtgtcatatc
cccgaggctgaggcaagaagagagaaggaaataagtggcaaccctgcacactctgattct
gtcctaccccaggacctgcacatggcttccacggttcctcgaagtgaaccatctgctcat
gccacagtgacttccttgcctgggttatctattcctaggctagaggaagaaaattatgag
aagggaatgatttggggaataagtgacaagattggataccagtaccataacagaatagct
agcacatctgcagggatgtggaggtctgtggatccaggcatgtttccctcttttggttcc
tatgatggagaagagttggaagataagagttggagcaagacccgaactctcttcaagtcc
atgaaagctgagagaggtgaagaagctgcaggagaaacgtgtgaagctagcagaggttgg
ttcatgaggtttaaggaaagaagctgtctccataacataaaagttcaaggtgaagcagca
aaccctgatggagaagctgcagcaagttatccagaagatctagctaaggtcactgatgaa
ggtggctacactaaagaacagattttcaatacggataaaatagccttctatattgaagaa
gatgccatctag

>gi568815575r:48087634_48295358|GENSCAN_predicted_peptide_6|210_aa
MRYHYTLITIDEIKDIVTTPNGDKDAEKLDTSLSAAGKVKSYSHSGKQFARFSSSKTSRA
VMVTQQPSGLPPYVDPRSPGLMVSIMSSSHSIADRVSAPRKGLSKEDYIRTDIFMINSQP
STSSGQSYVYFISNEQNQAGSMRWDEGQTTPGAMNGDNNCAKRAGDDAQIPEKIQKAKWA
EFLDERQSPRLGPSQKQDSEEPDSSLVKGE

>gi568815575r:48087634_48295358|GENSCAN_predicted_CDS_6|633_bp
atgaggtatcactacacacttattacaatagatgaaataaaagacatagtgacaacacca
aatggtgacaaggatgcagagaaactggacacctcattaagtgctgctgggaaggtaaaa
tcttacagccactctggaaagcagtttgcaaggttttcttcttctaaaacctcaagggct
gtgatggtcactcagcagcctagtggattgccaccgtatgtggacccacgttcccctggc
ttaatggtcagcattatgtcatcgtcccacagcatcgcagacagagtatcagcccccaga
aagggcctttccaaggaggactatatcaggactgacattttcatgatcaacagccagccc
tctaccagttctggccaatcctatgtgtatttcatcagcaatgaacagaaccaagctggg
agcatgagatgggacgagggtcagactactcccggtgccatgaacggagacaacaactgt
gcaaagagagctggggatgatgctcaaataccagagaagatacaaaaggctaaatgggca
gagttcctggatgaaagacagagcccgaggttgggacctagtcagaaacaggactcagag
gagcccgactcaagtttggtcaaaggagagtga

>gi568815575r:48087634_48295358|GENSCAN_predicted_peptide_7|184_aa
MDRTKGPVARKSQAVSLAGETAPGAMNGDDTFAKRPRDDAKASEKRSKAFDDIATYFSKK
EWKKMKYSEKISYVYMKRNYKAMTKLGFKVTLPPFMCNKQATDFQGNDFDNDHNRRIQVE
HPQMTFGRLHRIIPKIMPKKPAEDENDSKGVSEASGPQNDGKQLHPPGKANISEKINKRS
GKRK

>gi568815575r:48087634_48295358|GENSCAN_predicted_CDS_7|555_bp
atggacaggaccaagggtcctgtagctagaaagtctcaggctgtttctcttgcaggtgag
actgctcctggtgccatgaacggagacgacacctttgcaaagagacccagggatgatgct
aaagcatcagagaagagaagcaaggcctttgatgatattgccacatacttctctaagaaa
gagtggaaaaagatgaaatactcggagaaaatcagctatgtgtatatgaagagaaactat
aaggccatgactaaactaggtttcaaagtcaccctcccacctttcatgtgtaataaacag
gccacagacttccaggggaatgattttgataatgaccataaccgcaggattcaggttgaa
catcctcagatgactttcggcaggctccacagaatcatcccgaagatcatgcccaagaag
ccagcagaggacgaaaatgattcgaagggagtgtcagaagcatctggcccacaaaacgat
gggaaacaactgcaccccccaggaaaagcaaatatttctgagaagattaataagagatct
ggtaagaggaaatga

>gi568815575r:48087634_48295358|GENSCAN_predicted_peptide_8|225_aa
XTKGLEPGKSQAVSLAGQTAPGAMNGDDAFARRPRVDAQIPEKIQKAFDDIAKYFSKEEW
EKMKASEKILYVYMKRKYEAMTKLGFKATLPPFMCNKRTADFQGNDFDNDYNHGHQGWEN
QEAKVMGYGRSKQLQSCLHLGLVFQVHDPAHSDSALPQDLDTPSMVPRSEPSAHATVTSS
PGLCIPRLEEETATATPPFSNHHLDQPAAINTEARPSTNKKSVTH

>gi568815575r:48087634_48295358|GENSCAN_predicted_CDS_8|678_bp
nngaccaaaggtcttgagcctggaaagtctcaggcagtttctcttgcaggtcagactgct
cccggtgccatgaatggagacgacgcctttgcaaggagacccagggttgatgctcaaata
ccagagaagatacaaaaggccttcgatgatattgccaaatacttctctaaggaagagtgg
gaaaagatgaaagcctcagagaaaatcctctatgtgtatatgaagagaaagtatgaggcc
atgactaaactaggtttcaaggcaaccctcccacctttcatgtgtaataaacggaccgca
gacttccaggggaatgattttgataatgactataaccatgggcatcagggctgggagaac
caggaggccaaggtgatgggctatggacggtcaaaacagctccaatcctgcctccacctg
gggctggtgtttcaagtccatgaccctgcacactctgattctgccctaccccaggacctg
gacacgccttccatggttcctcgaagtgaaccatctgctcatgccacagtgacttcctcg
cctggtttatgcattcctaggctagaagaagaaactgccacagccactccacccttcagc
aaccaccaccttgatcagccagcagccatcaacaccgaggcaagaccctccaccaacaag
aagagtgtaactcactga