Result of FASTA (omim) for pF1KB0974
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0974, 437 aa
  1>>>pF1KB0974 437 - 437 aa - 437 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1737+/-0.000311; mu= 14.3067+/- 0.019
 mean_var=102.3210+/-19.884, 0's: 0 Z-trim(119.3): 46  B-trim: 73 in 1/52
 Lambda= 0.126792
 statistics sampled from 33112 (33159) to 33112 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.389), width:  16
 Scan time: 10.390

The best scores are:                                      opt bits E(85289)
NP_065139 (OMIM: 162860) CD177 antigen precursor [ ( 437) 3056 569.3  7e-162
XP_016882510 (OMIM: 162860) PREDICTED: CD177 antig ( 467) 2844 530.5 3.5e-150
XP_016882511 (OMIM: 162860) PREDICTED: CD177 antig ( 412) 2830 527.9 1.9e-149
NP_001123483 (OMIM: 612665) testis-expressed seque ( 249)  430 88.7 1.8e-17
NP_113639 (OMIM: 612665) testis-expressed sequence ( 267)  430 88.8 1.9e-17
XP_005259360 (OMIM: 612665) PREDICTED: testis-expr ( 305)  430 88.8 2.1e-17
NP_055215 (OMIM: 609484) ly6/PLAUR domain-containi ( 346)  173 41.8  0.0033


>>NP_065139 (OMIM: 162860) CD177 antigen precursor [Homo  (437 aa)
 initn: 3056 init1: 3056 opt: 3056  Z-score: 3027.3  bits: 569.3 E(85289): 7e-162
Smith-Waterman score: 3056; 99.1% identity (99.5% similar) in 437 aa overlap (1-437:1-437)

               10        20        30        40        50        60
pF1KB0 MSAVLLLALLGFILPLPGVQALLCQFGTVQHVWKVSDLPRQWTPKNTSCDSGLGCQDTLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 MSAVLLLALLGFILPLPGVQALLCQFGTVQHVWKVSDLPRQWTPKNTSCDSGLGCQDTLM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 LIESGPQVSLVLSKGCTEAKDQEPRVTEHRMGPGLSLISYTFVCRQEDFCNNLVNSLPLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 LIESGPQVSLVLSKGCTEAKDQEPRVTEHRMGPGLSLISYTFVCRQEDFCNNLVNSLPLW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 APQPPADPGSLRCPVCLSMEGCLEGTTEEICPKGTTHCYDGLLRLRGGGIFSNLRVQGCM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 APQPPADPGSLRCPVCLSMEGCLEGTTEEICPKGTTHCYDGLLRLRGGGIFSNLRVQGCM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 PQPGCNLLNGTQEIGPVGMTENCNRKDFLTCHRGTTIMTHGNLAQEPTDWTTSNTEMCEV
       ::: :::::::::::::::::::. :::::::::::::::::::::::::::::::::::
NP_065 PQPVCNLLNGTQEIGPVGMTENCDMKDFLTCHRGTTIMTHGNLAQEPTDWTTSNTEMCEV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 GQVCQETLLLIDVGLTSTLVGTKGCSTVGAQNSQKTTIHSAPPGVLVASYTHFCSSDLCN
       ::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 GQVCQETLLLLDVGLTSTLVGTKGCSTVGAQNSQKTTIHSAPPGVLVASYTHFCSSDLCN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 SASSSSVLLNSLPPQAAPVPGDRQCPTCVQPLGTCSSGSPRMTCPRGATHCYDGYIHLSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 SASSSSVLLNSLPPQAAPVPGDRQCPTCVQPLGTCSSGSPRMTCPRGATHCYDGYIHLSG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB0 GGLSTKMSIQGCVAQPSSFLLNHTRQIGIFSAREKRDVQPPASQHEGGGAEGLESLTWGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 GGLSTKMSIQGCVAQPSSFLLNHTRQIGIFSAREKRDVQPPASQHEGGGAEGLESLTWGV
              370       380       390       400       410       420

              430       
pF1KB0 GLALAPALWWGVVCPSC
       :::::::::::::::::
NP_065 GLALAPALWWGVVCPSC
              430       

>>XP_016882510 (OMIM: 162860) PREDICTED: CD177 antigen i  (467 aa)
 initn: 3146 init1: 2841 opt: 2844  Z-score: 2817.3  bits: 530.5 E(85289): 3.5e-150
Smith-Waterman score: 2844; 95.8% identity (97.4% similar) in 427 aa overlap (1-427:1-426)

               10        20        30        40        50        60
pF1KB0 MSAVLLLALLGFILPLPGVQALLCQFGTVQHVWKVSDLPRQWTPKNTSCDSGLGCQDTLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSAVLLLALLGFILPLPGVQALLCQFGTVQHVWKVSDLPRQWTPKNTSCDSGLGCQDTLM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 LIESGPQVSLVLSKGCTEAKDQEPRVTEHRMGPGLSLISYTFVCRQEDFCNNLVNSLPLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIESGPQVSLVLSKGCTEAKDQEPRVTEHRMGPGLSLISYTFVCRQEDFCNNLVNSLPLW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 APQPPADPGSLRCPVCLSMEGCLEGTTEEICPKGTTHCYDGLLRLRGGGIFSNLRVQGCM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 APQPPADPGSLRCPVCLSMEGCLEGTTEEICPKGTTHCYDGLLRLRGGGIFSNLRVQGCM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 PQPGCNLLNGTQEIGPVGMTENCNRKDFLTCHRGTTIMTHGNLAQEPTDWTTSNTEMCEV
       ::: :::::::::::::::::::. :::::::::::::::::::::::::::::::::::
XP_016 PQPVCNLLNGTQEIGPVGMTENCDMKDFLTCHRGTTIMTHGNLAQEPTDWTTSNTEMCEV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 GQVCQETLLLIDVGLTSTLVGTKGCSTVGAQNSQKTTIHSAPPGVLVASYTHFCSSDLCN
       ::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GQVCQETLLLLDVGLTSTLVGTKGCSTVGAQNSQKTTIHSAPPGVLVASYTHFCSSDLCN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 SASSSSVLLNSLPPQAAPVPGDRQCPTCVQPLGTCSSGSPRMTCPRGATHCYDGYIHLSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SASSSSVLLNSLPPQAAPVPGDRQCPTCVQPLGTCSSGSPRMTCPRGATHCYDGYIHLSG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB0 GGLSTKMSIQGCVAQPSSFLLNHTRQIGIFSAREKRDVQPPASQHEGGGAEGLESLTWGV
       ::::::::::::::::::::::::::::::::::::::::::::::::  : . . . .:
XP_016 GGLSTKMSIQGCVAQPSSFLLNHTRQIGIFSAREKRDVQPPASQHEGGPPE-VGTKAAAV
              370       380       390       400       410          

              430                                      
pF1KB0 GLALAPALWWGVVCPSC                               
        .  :::                                         
XP_016 HFCWAPAHREDPSISLVCTFLLCMRSQGFPGAHRCGRGRGRRTGAMGA
     420       430       440       450       460       

>>XP_016882511 (OMIM: 162860) PREDICTED: CD177 antigen i  (412 aa)
 initn: 2830 init1: 2830 opt: 2830  Z-score: 2804.2  bits: 527.9 E(85289): 1.9e-149
Smith-Waterman score: 2830; 99.0% identity (99.5% similar) in 407 aa overlap (1-407:1-407)

               10        20        30        40        50        60
pF1KB0 MSAVLLLALLGFILPLPGVQALLCQFGTVQHVWKVSDLPRQWTPKNTSCDSGLGCQDTLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSAVLLLALLGFILPLPGVQALLCQFGTVQHVWKVSDLPRQWTPKNTSCDSGLGCQDTLM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 LIESGPQVSLVLSKGCTEAKDQEPRVTEHRMGPGLSLISYTFVCRQEDFCNNLVNSLPLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIESGPQVSLVLSKGCTEAKDQEPRVTEHRMGPGLSLISYTFVCRQEDFCNNLVNSLPLW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 APQPPADPGSLRCPVCLSMEGCLEGTTEEICPKGTTHCYDGLLRLRGGGIFSNLRVQGCM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 APQPPADPGSLRCPVCLSMEGCLEGTTEEICPKGTTHCYDGLLRLRGGGIFSNLRVQGCM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 PQPGCNLLNGTQEIGPVGMTENCNRKDFLTCHRGTTIMTHGNLAQEPTDWTTSNTEMCEV
       ::: :::::::::::::::::::. :::::::::::::::::::::::::::::::::::
XP_016 PQPVCNLLNGTQEIGPVGMTENCDMKDFLTCHRGTTIMTHGNLAQEPTDWTTSNTEMCEV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 GQVCQETLLLIDVGLTSTLVGTKGCSTVGAQNSQKTTIHSAPPGVLVASYTHFCSSDLCN
       ::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GQVCQETLLLLDVGLTSTLVGTKGCSTVGAQNSQKTTIHSAPPGVLVASYTHFCSSDLCN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 SASSSSVLLNSLPPQAAPVPGDRQCPTCVQPLGTCSSGSPRMTCPRGATHCYDGYIHLSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SASSSSVLLNSLPPQAAPVPGDRQCPTCVQPLGTCSSGSPRMTCPRGATHCYDGYIHLSG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB0 GGLSTKMSIQGCVAQPSSFLLNHTRQIGIFSAREKRDVQPPASQHEGGGAEGLESLTWGV
       :::::::::::::::::::::::::::::::::::::::::::::::             
XP_016 GGLSTKMSIQGCVAQPSSFLLNHTRQIGIFSAREKRDVQPPASQHEGVEVPH        
              370       380       390       400       410          

              430       
pF1KB0 GLALAPALWWGVVCPSC

>>NP_001123483 (OMIM: 612665) testis-expressed sequence   (249 aa)
 initn: 411 init1: 199 opt: 430  Z-score: 434.6  bits: 88.7 E(85289): 1.8e-17
Smith-Waterman score: 464; 33.9% identity (66.1% similar) in 224 aa overlap (209-428:26-241)

      180       190       200       210       220       230        
pF1KB0 CMPQPGCNLLNGTQEIGPVGMTENCNRKDFLTCHRGTTIMTHGNLAQEPTDWTTSNTEMC
                                     : :..: .. .... :.   .::: ..: :
NP_001      MGTPRIQHLLILLVLGASLLTSGLELYCQKGLSMTVEADPANM-FNWTTEEVETC
                    10        20        30        40         50    

      240       250       260       270       280       290        
pF1KB0 EVGQVCQETLLLIDVGLTSTLVGTKGCSTVGAQNSQKTTIHSAPPGVLVASYTHFCSSDL
       . : .::::.:.: .:  .....::::   : ...   . ::.:::..:.::...: ...
NP_001 DKGALCQETILIIKAGTETAILATKGCIPEG-EEAITIVQHSSPPGLIVTSYSNYCEDSF
           60        70        80         90       100       110   

      300       310       320       330       340       350        
pF1KB0 CNSASSSSVLLNSLPPQAAPVPGDRQCPTCVQPLGTCSSGSPRMTCPRGATHCYDGYIHL
       ::. .: : . .     :. :    .:::::  :::: : .: . :: :.:.::.: ...
NP_001 CNDKDSLSQFWEFSETTASTVSTTLHCPTCVA-LGTCFS-APSLPCPNGTTRCYQGKLEI
           120       130       140        150        160       170 

      360       370       380       390           400       410    
pF1KB0 SGGGLSTKMSIQGCVAQPSSFLLNHTRQIGIFSARE----KRDVQPPASQHEGGGAEGLE
       .:::. ... ..::.:. .  :..    .: . .::    .  .::  ...   ::  : 
NP_001 TGGGIESSVEVKGCTAMIGCRLMSGILAVGPMFVREACPHQLLTQPRKTEN---GATCLP
             180       190       200       210       220           

          420       430       
pF1KB0 SLTWGVGLALAPALWWGVVCPSC
         .::. : : : :         
NP_001 IPVWGLQLLL-PLLLPSFIHFS 
      230        240          

>>NP_113639 (OMIM: 612665) testis-expressed sequence 101  (267 aa)
 initn: 411 init1: 199 opt: 430  Z-score: 434.2  bits: 88.8 E(85289): 1.9e-17
Smith-Waterman score: 464; 33.9% identity (66.1% similar) in 224 aa overlap (209-428:44-259)

      180       190       200       210       220       230        
pF1KB0 CMPQPGCNLLNGTQEIGPVGMTENCNRKDFLTCHRGTTIMTHGNLAQEPTDWTTSNTEMC
                                     : :..: .. .... :.   .::: ..: :
NP_113 SPEEAMGTPRIQHLLILLVLGASLLTSGLELYCQKGLSMTVEADPANM-FNWTTEEVETC
            20        30        40        50        60         70  

      240       250       260       270       280       290        
pF1KB0 EVGQVCQETLLLIDVGLTSTLVGTKGCSTVGAQNSQKTTIHSAPPGVLVASYTHFCSSDL
       . : .::::.:.: .:  .....::::   : ...   . ::.:::..:.::...: ...
NP_113 DKGALCQETILIIKAGTETAILATKGCIPEG-EEAITIVQHSSPPGLIVTSYSNYCEDSF
             80        90       100        110       120       130 

      300       310       320       330       340       350        
pF1KB0 CNSASSSSVLLNSLPPQAAPVPGDRQCPTCVQPLGTCSSGSPRMTCPRGATHCYDGYIHL
       ::. .: : . .     :. :    .:::::  :::: : .: . :: :.:.::.: ...
NP_113 CNDKDSLSQFWEFSETTASTVSTTLHCPTCVA-LGTCFS-APSLPCPNGTTRCYQGKLEI
             140       150       160         170       180         

      360       370       380       390           400       410    
pF1KB0 SGGGLSTKMSIQGCVAQPSSFLLNHTRQIGIFSARE----KRDVQPPASQHEGGGAEGLE
       .:::. ... ..::.:. .  :..    .: . .::    .  .::  ...   ::  : 
NP_113 TGGGIESSVEVKGCTAMIGCRLMSGILAVGPMFVREACPHQLLTQPRKTEN---GATCLP
     190       200       210       220       230       240         

          420       430       
pF1KB0 SLTWGVGLALAPALWWGVVCPSC
         .::. : : : :         
NP_113 IPVWGLQLLL-PLLLPSFIHFS 
        250        260        

>>XP_005259360 (OMIM: 612665) PREDICTED: testis-expresse  (305 aa)
 initn: 432 init1: 199 opt: 430  Z-score: 433.4  bits: 88.8 E(85289): 2.1e-17
Smith-Waterman score: 464; 33.9% identity (66.1% similar) in 224 aa overlap (209-428:82-297)

      180       190       200       210       220       230        
pF1KB0 CMPQPGCNLLNGTQEIGPVGMTENCNRKDFLTCHRGTTIMTHGNLAQEPTDWTTSNTEMC
                                     : :..: .. .... :.   .::: ..: :
XP_005 SPEEAMGTPRIQHLLILLVLGASLLTSGLELYCQKGLSMTVEADPANM-FNWTTEEVETC
              60        70        80        90        100       110

      240       250       260       270       280       290        
pF1KB0 EVGQVCQETLLLIDVGLTSTLVGTKGCSTVGAQNSQKTTIHSAPPGVLVASYTHFCSSDL
       . : .::::.:.: .:  .....::::   : ...   . ::.:::..:.::...: ...
XP_005 DKGALCQETILIIKAGTETAILATKGCIPEG-EEAITIVQHSSPPGLIVTSYSNYCEDSF
              120       130       140        150       160         

      300       310       320       330       340       350        
pF1KB0 CNSASSSSVLLNSLPPQAAPVPGDRQCPTCVQPLGTCSSGSPRMTCPRGATHCYDGYIHL
       ::. .: : . .     :. :    .:::::  :::: : .: . :: :.:.::.: ...
XP_005 CNDKDSLSQFWEFSETTASTVSTTLHCPTCVA-LGTCFS-APSLPCPNGTTRCYQGKLEI
     170       180       190       200         210       220       

      360       370       380       390           400       410    
pF1KB0 SGGGLSTKMSIQGCVAQPSSFLLNHTRQIGIFSARE----KRDVQPPASQHEGGGAEGLE
       .:::. ... ..::.:. .  :..    .: . .::    .  .::  ...   ::  : 
XP_005 TGGGIESSVEVKGCTAMIGCRLMSGILAVGPMFVREACPHQLLTQPRKTEN---GATCLP
       230       240       250       260       270          280    

          420       430       
pF1KB0 SLTWGVGLALAPALWWGVVCPSC
         .::. : : : :         
XP_005 IPVWGLQLLL-PLLLPSFIHFS 
          290        300      

>>NP_055215 (OMIM: 609484) ly6/PLAUR domain-containing p  (346 aa)
 initn:  97 init1:  76 opt: 173  Z-score: 178.6  bits: 41.8 E(85289): 0.0033
Smith-Waterman score: 173; 23.3% identity (56.4% similar) in 172 aa overlap (214-373:27-194)

           190       200       210       220       230          240
pF1KB0 GCNLLNGTQEIGPVGMTENCNRKDFLTCHRGTTIMTHGNLAQEPTDWTTSN---TEMCEV
                                     :.  .   . .:.  :  . :   :  :  
NP_055     MDPARKAGAQAMIWTAGWLLLLLLRGGAQALECYSCVQKADDGCSPNKMKTVKCAP
                   10        20        30        40        50      

               250       260        270       280       290        
pF1KB0 G-QVCQETLLLIDVGLTSTLVGTKGC-STVGAQNSQKTTIHSAPPGVLVASYTHFCSSDL
       : .:: :..  ...   .  ....:: : . ..:..   .:    :.:.    . :..: 
NP_055 GVDVCTEAVGAVETIHGQFSLAVRGCGSGLPGKNDRGLDLH----GLLAFIQLQQCAQDR
         60        70        80        90           100       110  

      300        310       320       330        340        350     
pF1KB0 CNSASS-SSVLLNSLPPQAAPVPGDRQCPTCVQ-PLGTCSSGSPRM-TCPRGATH----C
       ::.  . .:  :.    ..:  :.  .: .::     .:.. :: . .:  .. :    :
NP_055 CNAKLNLTSRALDPAGNESAYPPNGVECYSCVGLSREACQGTSPPVVSCYNASDHVYKGC
            120       130       140       150       160       170  

             360       370       380       390       400       410 
pF1KB0 YDGYIHLSGGGLSTKMSIQGCVAQPSSFLLNHTRQIGIFSAREKRDVQPPASQHEGGGAE
       .:: . :......... ..:::                                      
NP_055 FDGNVTLTAANVTVSLPVRGCVQDEFCTRDGVTGPGFTLSGSCCQGSRCNSDLRNKTYFS
            180       190       200       210       220       230  




437 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:36:27 2016 done: Sat Nov  5 17:36:29 2016
 Total Scan time: 10.390 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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