Result of FASTA (omim) for pF1KB6781
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6781, 120 aa
  1>>>pF1KB6781 120 - 120 aa - 120 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7540+/-0.000297; mu= 12.8954+/- 0.018
 mean_var=51.5989+/-10.191, 0's: 0 Z-trim(116.4): 65  B-trim: 0 in 0/50
 Lambda= 0.178548
 statistics sampled from 27512 (27584) to 27512 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.323), width:  16
 Scan time:  4.440

The best scores are:                                      opt bits E(85289)
XP_005258077 (OMIM: 601394) PREDICTED: C-C motif c ( 120)  795 211.9   2e-55
NP_004581 (OMIM: 601394) C-C motif chemokine 16 pr ( 120)  795 211.9   2e-55
NP_996890 (OMIM: 603782) C-C motif chemokine 4-lik (  92)  249 71.2 3.5e-13
NP_002975 (OMIM: 182284) C-C motif chemokine 4 pre (  92)  247 70.7 5.1e-13
NP_116739 (OMIM: 601392) C-C motif chemokine 14 is (  93)  246 70.4 6.1e-13
NP_066286 (OMIM: 601395,609423) C-C motif chemokin (  93)  240 68.9 1.8e-12
NP_001001437 (OMIM: 609468) C-C motif chemokine 3- (  93)  240 68.9 1.8e-12
NP_002974 (OMIM: 182283,609423) C-C motif chemokin (  92)  232 66.8 7.4e-12
NP_002976 (OMIM: 187011) C-C motif chemokine 5 iso (  91)  219 63.4 7.4e-11
NP_006264 (OMIM: 158106) C-C motif chemokine 7 pre (  99)  218 63.2 9.5e-11
NP_116738 (OMIM: 601392) C-C motif chemokine 14 is ( 109)  215 62.5 1.8e-10
NP_001278397 (OMIM: 610757) C-C motif chemokine 4- (  87)  206 60.1 7.3e-10
NP_005614 (OMIM: 602283) C-C motif chemokine 8 pre (  99)  195 57.3 5.8e-09
NP_002979 (OMIM: 603757) C-C motif chemokine 18 pr (  89)  192 56.5   9e-09
NP_005399 (OMIM: 601391) C-C motif chemokine 13 pr (  98)  190 56.0 1.4e-08
NP_002978 (OMIM: 601520) C-C motif chemokine 17 pr (  94)  187 55.2 2.3e-08
XP_011521558 (OMIM: 601520) PREDICTED: C-C motif c ( 122)  187 55.3 2.9e-08
XP_016879019 (OMIM: 601520) PREDICTED: C-C motif c ( 123)  187 55.3 2.9e-08
NP_002980 (OMIM: 602737) C-C motif chemokine 21 pr ( 134)  185 54.8 4.5e-08
XP_011516306 (OMIM: 602737) PREDICTED: C-C motif c ( 145)  185 54.8 4.8e-08
XP_016867161 (OMIM: 604697) PREDICTED: C-C motif c (  94)  180 53.4 8.1e-08
NP_006063 (OMIM: 604697) C-C motif chemokine 26 pr (  94)  180 53.4 8.1e-08
XP_016867160 (OMIM: 604697) PREDICTED: C-C motif c ( 148)  180 53.5 1.2e-07
NP_002973 (OMIM: 158105,182940,607948,609423) C-C  (  99)  174 51.9 2.5e-07
NP_002977 (OMIM: 600807,601156,609423) eotaxin pre (  97)  172 51.3 3.5e-07
NP_002982 (OMIM: 602495) C-C motif chemokine 24 pr ( 119)  162 48.8 2.5e-06
XP_011514761 (OMIM: 602495) PREDICTED: C-C motif c ( 119)  162 48.8 2.5e-06
XP_011514762 (OMIM: 602495) PREDICTED: C-C motif c ( 119)  162 48.8 2.5e-06
NP_001123518 (OMIM: 601960) C-C motif chemokine 20 (  95)  160 48.3 2.9e-06
NP_004582 (OMIM: 601960) C-C motif chemokine 20 is (  96)  160 48.3 2.9e-06
NP_006265 (OMIM: 602227) C-C motif chemokine 19 pr (  98)  155 47.0 7.3e-06
NP_002981 (OMIM: 602957) C-C motif chemokine 22 pr (  93)  151 45.9 1.4e-05
XP_016879020 (OMIM: 602957) PREDICTED: C-C motif c (  93)  151 45.9 1.4e-05
NP_001278401 (OMIM: 610757) C-C motif chemokine 4- (  96)  149 45.4 2.1e-05
NP_665905 (OMIM: 602494) C-C motif chemokine 23 is ( 120)  145 44.4 5.1e-05
NP_005055 (OMIM: 602494) C-C motif chemokine 23 is ( 137)  145 44.5 5.8e-05
NP_116741 (OMIM: 601393) C-C motif chemokine 15 pr ( 113)  142 43.7 8.3e-05
NP_001278400 (OMIM: 610757) C-C motif chemokine 4- ( 103)  140 43.1 0.00011
NP_001278399 (OMIM: 610757) C-C motif chemokine 4- (  64)  136 42.0 0.00015
NP_001278398 (OMIM: 610757) C-C motif chemokine 4- (  64)  136 42.0 0.00015
NP_001278402 (OMIM: 610757) C-C motif chemokine 4- (  86)  136 42.1 0.00019
NP_001278404 (OMIM: 610757) C-C motif chemokine 4- ( 103)  136 42.1 0.00023
NP_954637 (OMIM: 600835,609423) stromal cell-deriv (  89)  130 40.5 0.00058
NP_000600 (OMIM: 600835,609423) stromal cell-deriv (  93)  130 40.5  0.0006
NP_002972 (OMIM: 182281) C-C motif chemokine 1 pre (  96)  129 40.3 0.00074
NP_001029058 (OMIM: 600835,609423) stromal cell-de ( 119)  130 40.6 0.00074
NP_001171605 (OMIM: 600835,609423) stromal cell-de ( 140)  130 40.6 0.00085
XP_016882611 (OMIM: 602565) PREDICTED: C-C motif c ( 149)  119 37.8  0.0064
NP_001188288 (OMIM: 602565) C-C motif chemokine 25 ( 149)  119 37.8  0.0064
XP_011526479 (OMIM: 602565) PREDICTED: C-C motif c ( 150)  119 37.8  0.0064


>>XP_005258077 (OMIM: 601394) PREDICTED: C-C motif chemo  (120 aa)
 initn: 795 init1: 795 opt: 795  Z-score: 1115.9  bits: 211.9 E(85289): 2e-55
Smith-Waterman score: 795; 100.0% identity (100.0% similar) in 120 aa overlap (1-120:1-120)

               10        20        30        40        50        60
pF1KB6 MKVSEAALSLLVLILIITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGYRKALNC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MKVSEAALSLLVLILIITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGYRKALNC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 HLPAIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLNSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HLPAIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLNSQ
               70        80        90       100       110       120

>>NP_004581 (OMIM: 601394) C-C motif chemokine 16 precur  (120 aa)
 initn: 795 init1: 795 opt: 795  Z-score: 1115.9  bits: 211.9 E(85289): 2e-55
Smith-Waterman score: 795; 100.0% identity (100.0% similar) in 120 aa overlap (1-120:1-120)

               10        20        30        40        50        60
pF1KB6 MKVSEAALSLLVLILIITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGYRKALNC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MKVSEAALSLLVLILIITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGYRKALNC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 HLPAIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLNSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 HLPAIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLNSQ
               70        80        90       100       110       120

>>NP_996890 (OMIM: 603782) C-C motif chemokine 4-like pr  (92 aa)
 initn: 234 init1: 136 opt: 249  Z-score: 357.6  bits: 71.2 E(85289): 3.5e-13
Smith-Waterman score: 249; 40.4% identity (71.3% similar) in 94 aa overlap (1-93:1-91)

               10        20        30        40        50          
pF1KB6 MKVSEAALSLLVLILIITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGYRKALN-
       ::.  ..::::::.  . : . :   .:   . :..::..:  . ::: .:: : .. . 
NP_996 MKLCVTVLSLLVLVAAFCSLALS---APMGSDPPTACCFSYTARKLPRNFVVDYYETSSL
               10        20           30        40        50       

      60        70        80        90       100       110         
pF1KB6 CHLPAIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLNS
       :  ::..: :::...::..:...:::::. : .:                          
NP_996 CSQPAVVFQTKRGKQVCADPSESWVQEYVYDLELN                         
        60        70        80        90                           

     120
pF1KB6 Q

>>NP_002975 (OMIM: 182284) C-C motif chemokine 4 precurs  (92 aa)
 initn: 232 init1: 137 opt: 247  Z-score: 354.8  bits: 70.7 E(85289): 5.1e-13
Smith-Waterman score: 247; 39.4% identity (71.3% similar) in 94 aa overlap (1-93:1-91)

               10        20        30        40        50          
pF1KB6 MKVSEAALSLLVLILIITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGYRKALN-
       ::.  ..::::.:.  . : . :   .:   . :..::..:  . ::: .:: : .. . 
NP_002 MKLCVTVLSLLMLVAAFCSPALS---APMGSDPPTACCFSYTARKLPRNFVVDYYETSSL
               10        20           30        40        50       

      60        70        80        90       100       110         
pF1KB6 CHLPAIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLNS
       :  ::..: :::...::..:...:::::. : .:                          
NP_002 CSQPAVVFQTKRSKQVCADPSESWVQEYVYDLELN                         
        60        70        80        90                           

     120
pF1KB6 Q

>>NP_116739 (OMIM: 601392) C-C motif chemokine 14 isofor  (93 aa)
 initn: 249 init1: 161 opt: 246  Z-score: 353.3  bits: 70.4 E(85289): 6.1e-13
Smith-Waterman score: 246; 41.3% identity (69.6% similar) in 92 aa overlap (1-90:1-89)

               10         20        30        40        50         
pF1KB6 MKVSEAALSLLVLILI-ITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGYRKALN
       ::.: ::. ...:: : . . ..:. . :     :: ::. :    .::. .. : .. .
NP_116 MKISVAAIPFFLLITIALGTKTESSSRGPY---HPSECCFTYTTYKIPRQRIMDYYETNS
               10        20        30           40        50       

       60        70        80        90       100       110        
pF1KB6 -CHLPAIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLN
        :  :.:.:.:::.. :::::.: :::.::::                            
NP_116 QCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN                        
        60        70        80        90                           

      120
pF1KB6 SQ

>>NP_066286 (OMIM: 601395,609423) C-C motif chemokine 3-  (93 aa)
 initn: 203 init1: 125 opt: 240  Z-score: 345.0  bits: 68.9 E(85289): 1.8e-12
Smith-Waterman score: 240; 35.1% identity (74.5% similar) in 94 aa overlap (1-93:1-91)

               10        20        30        40        50          
pF1KB6 MKVSEAALSLLVLILIITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGY-RKALN
       :.:: :::..:.  . . .   : : .   ..::..::..:  . .:. ... : . . .
NP_066 MQVSTAALAVLLCTMALCNQVLSAPLA---ADTPTACCFSYTSRQIPQNFIADYFETSSQ
               10        20           30        40        50       

      60        70        80        90       100       110         
pF1KB6 CHLPAIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLNS
       :  :..::.:::.:.::..:...:::.:..: .:                          
NP_066 CSKPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA                        
        60        70        80        90                           

     120
pF1KB6 Q

>>NP_001001437 (OMIM: 609468) C-C motif chemokine 3-like  (93 aa)
 initn: 203 init1: 125 opt: 240  Z-score: 345.0  bits: 68.9 E(85289): 1.8e-12
Smith-Waterman score: 240; 35.1% identity (74.5% similar) in 94 aa overlap (1-93:1-91)

               10        20        30        40        50          
pF1KB6 MKVSEAALSLLVLILIITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGY-RKALN
       :.:: :::..:.  . . .   : : .   ..::..::..:  . .:. ... : . . .
NP_001 MQVSTAALAVLLCTMALCNQVLSAPLA---ADTPTACCFSYTSRQIPQNFIADYFETSSQ
               10        20           30        40        50       

      60        70        80        90       100       110         
pF1KB6 CHLPAIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLNS
       :  :..::.:::.:.::..:...:::.:..: .:                          
NP_001 CSKPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA                        
        60        70        80        90                           

     120
pF1KB6 Q

>>NP_002974 (OMIM: 182283,609423) C-C motif chemokine 3   (92 aa)
 initn: 204 init1: 126 opt: 232  Z-score: 333.9  bits: 66.8 E(85289): 7.4e-12
Smith-Waterman score: 232; 36.2% identity (74.5% similar) in 94 aa overlap (1-93:1-90)

               10        20        30        40        50          
pF1KB6 MKVSEAALSLLVLILIITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGY-RKALN
       :.:: :::.    .:. : :  .: ..   ..::..::..:  . .:. ... : . . .
NP_002 MQVSTAALA----VLLCTMALCNQFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQ
                   10        20        30        40        50      

      60        70        80        90       100       110         
pF1KB6 CHLPAIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLNS
       :  :..::.:::.:.::..:...:::.:..: .:                          
NP_002 CSKPGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA                        
         60        70        80        90                          

     120
pF1KB6 Q

>>NP_002976 (OMIM: 187011) C-C motif chemokine 5 isoform  (91 aa)
 initn: 216 init1: 136 opt: 219  Z-score: 315.9  bits: 63.4 E(85289): 7.4e-11
Smith-Waterman score: 219; 38.2% identity (66.3% similar) in 89 aa overlap (1-88:1-85)

               10        20        30        40        50          
pF1KB6 MKVSEAALSLLVLILIITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGY-RKALN
       :::: :::.....   . . . ..:   .  .::  ::. :  . :::  .  :   . .
NP_002 MKVSAAALAVILIATALCAPASASPYSSD--TTP--CCFAYIARPLPRAHIKEYFYTSGK
               10        20          30          40        50      

      60        70        80        90       100       110         
pF1KB6 CHLPAIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLNS
       :  ::..:::..::.::.::.  ::.:::                               
NP_002 CSNPAVVFVTRKNRQVCANPEKKWVREYINSLEMS                         
         60        70        80        90                          

>>NP_006264 (OMIM: 158106) C-C motif chemokine 7 precurs  (99 aa)
 initn: 230 init1: 115 opt: 218  Z-score: 313.9  bits: 63.2 E(85289): 9.5e-11
Smith-Waterman score: 218; 35.2% identity (68.1% similar) in 91 aa overlap (1-89:1-88)

               10        20        30        40        50        60
pF1KB6 MKVSEAALSLLVLILIITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGYRKALNC
       ::.: : : ::.    ..  . .:   :  .:: .::: .. .: .:.. . .::.. . 
NP_006 MKASAALLCLLLTAAAFSPQGLAQ---PVGINTSTTCCYRFINKKIPKQRLESYRRTTSS
               10        20           30        40        50       

                 70        80        90       100       110        
pF1KB6 HLP--AIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLN
       : :  :.:: :: ..:.:..:.. :::...:                             
NP_006 HCPREAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL                  
        60        70        80        90                           

      120
pF1KB6 SQ




120 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:31:38 2016 done: Sat Nov  5 17:31:38 2016
 Total Scan time:  4.440 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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