Result of FASTA (ccds) for pF1KB6781
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6781, 120 aa
  1>>>pF1KB6781 120 - 120 aa - 120 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9155+/-0.000599; mu= 11.8725+/- 0.036
 mean_var=52.8073+/-10.399, 0's: 0 Z-trim(110.0): 46  B-trim: 0 in 0/51
 Lambda= 0.176493
 statistics sampled from 11213 (11259) to 11213 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.346), width:  16
 Scan time:  1.650

The best scores are:                                      opt bits E(32554)
CCDS11303.1 CCL16 gene_id:6360|Hs108|chr17         ( 120)  795 209.6 3.8e-55
CCDS11308.1 CCL4 gene_id:6351|Hs108|chr17          (  92)  247 70.0   3e-13
CCDS32624.1 CCL14 gene_id:6358|Hs108|chr17         (  93)  246 69.8 3.7e-13
CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17      (  93)  240 68.2 1.1e-12
CCDS11307.1 CCL3 gene_id:6348|Hs108|chr17          (  92)  232 66.2 4.3e-12
CCDS11300.1 CCL5 gene_id:6352|Hs108|chr17          (  91)  219 62.9 4.2e-11
CCDS11278.1 CCL7 gene_id:6354|Hs108|chr17          (  99)  218 62.6 5.4e-11
CCDS45652.1 CCL14 gene_id:6358|Hs108|chr17         ( 109)  215 61.9   1e-10


>>CCDS11303.1 CCL16 gene_id:6360|Hs108|chr17              (120 aa)
 initn: 795 init1: 795 opt: 795  Z-score: 1103.6  bits: 209.6 E(32554): 3.8e-55
Smith-Waterman score: 795; 100.0% identity (100.0% similar) in 120 aa overlap (1-120:1-120)

               10        20        30        40        50        60
pF1KB6 MKVSEAALSLLVLILIITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGYRKALNC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MKVSEAALSLLVLILIITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGYRKALNC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 HLPAIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLNSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HLPAIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLNSQ
               70        80        90       100       110       120

>>CCDS11308.1 CCL4 gene_id:6351|Hs108|chr17               (92 aa)
 initn: 232 init1: 137 opt: 247  Z-score: 351.3  bits: 70.0 E(32554): 3e-13
Smith-Waterman score: 247; 39.4% identity (71.3% similar) in 94 aa overlap (1-93:1-91)

               10        20        30        40        50          
pF1KB6 MKVSEAALSLLVLILIITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGYRKALN-
       ::.  ..::::.:.  . : . :   .:   . :..::..:  . ::: .:: : .. . 
CCDS11 MKLCVTVLSLLMLVAAFCSPALS---APMGSDPPTACCFSYTARKLPRNFVVDYYETSSL
               10        20           30        40        50       

      60        70        80        90       100       110         
pF1KB6 CHLPAIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLNS
       :  ::..: :::...::..:...:::::. : .:                          
CCDS11 CSQPAVVFQTKRSKQVCADPSESWVQEYVYDLELN                         
        60        70        80        90                           

     120
pF1KB6 Q

>>CCDS32624.1 CCL14 gene_id:6358|Hs108|chr17              (93 aa)
 initn: 249 init1: 161 opt: 246  Z-score: 349.8  bits: 69.8 E(32554): 3.7e-13
Smith-Waterman score: 246; 41.3% identity (69.6% similar) in 92 aa overlap (1-90:1-89)

               10         20        30        40        50         
pF1KB6 MKVSEAALSLLVLILI-ITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGYRKALN
       ::.: ::. ...:: : . . ..:. . :     :: ::. :    .::. .. : .. .
CCDS32 MKISVAAIPFFLLITIALGTKTESSSRGPY---HPSECCFTYTTYKIPRQRIMDYYETNS
               10        20        30           40        50       

       60        70        80        90       100       110        
pF1KB6 -CHLPAIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLN
        :  :.:.:.:::.. :::::.: :::.::::                            
CCDS32 QCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN                        
        60        70        80        90                           

      120
pF1KB6 SQ

>>CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17           (93 aa)
 initn: 203 init1: 125 opt: 240  Z-score: 341.5  bits: 68.2 E(32554): 1.1e-12
Smith-Waterman score: 240; 35.1% identity (74.5% similar) in 94 aa overlap (1-93:1-91)

               10        20        30        40        50          
pF1KB6 MKVSEAALSLLVLILIITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGY-RKALN
       :.:: :::..:.  . . .   : : .   ..::..::..:  . .:. ... : . . .
CCDS32 MQVSTAALAVLLCTMALCNQVLSAPLA---ADTPTACCFSYTSRQIPQNFIADYFETSSQ
               10        20           30        40        50       

      60        70        80        90       100       110         
pF1KB6 CHLPAIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLNS
       :  :..::.:::.:.::..:...:::.:..: .:                          
CCDS32 CSKPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA                        
        60        70        80        90                           

     120
pF1KB6 Q

>>CCDS11307.1 CCL3 gene_id:6348|Hs108|chr17               (92 aa)
 initn: 204 init1: 126 opt: 232  Z-score: 330.6  bits: 66.2 E(32554): 4.3e-12
Smith-Waterman score: 232; 36.2% identity (74.5% similar) in 94 aa overlap (1-93:1-90)

               10        20        30        40        50          
pF1KB6 MKVSEAALSLLVLILIITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGY-RKALN
       :.:: :::.    .:. : :  .: ..   ..::..::..:  . .:. ... : . . .
CCDS11 MQVSTAALA----VLLCTMALCNQFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQ
                   10        20        30        40        50      

      60        70        80        90       100       110         
pF1KB6 CHLPAIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLNS
       :  :..::.:::.:.::..:...:::.:..: .:                          
CCDS11 CSKPGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA                        
         60        70        80        90                          

     120
pF1KB6 Q

>>CCDS11300.1 CCL5 gene_id:6352|Hs108|chr17               (91 aa)
 initn: 216 init1: 136 opt: 219  Z-score: 312.8  bits: 62.9 E(32554): 4.2e-11
Smith-Waterman score: 219; 38.2% identity (66.3% similar) in 89 aa overlap (1-88:1-85)

               10        20        30        40        50          
pF1KB6 MKVSEAALSLLVLILIITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGY-RKALN
       :::: :::.....   . . . ..:   .  .::  ::. :  . :::  .  :   . .
CCDS11 MKVSAAALAVILIATALCAPASASPYSSD--TTP--CCFAYIARPLPRAHIKEYFYTSGK
               10        20          30          40        50      

      60        70        80        90       100       110         
pF1KB6 CHLPAIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLNS
       :  ::..:::..::.::.::.  ::.:::                               
CCDS11 CSNPAVVFVTRKNRQVCANPEKKWVREYINSLEMS                         
         60        70        80        90                          

>>CCDS11278.1 CCL7 gene_id:6354|Hs108|chr17               (99 aa)
 initn: 230 init1: 115 opt: 218  Z-score: 310.8  bits: 62.6 E(32554): 5.4e-11
Smith-Waterman score: 218; 35.2% identity (68.1% similar) in 91 aa overlap (1-89:1-88)

               10        20        30        40        50        60
pF1KB6 MKVSEAALSLLVLILIITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGYRKALNC
       ::.: : : ::.    ..  . .:   :  .:: .::: .. .: .:.. . .::.. . 
CCDS11 MKASAALLCLLLTAAAFSPQGLAQ---PVGINTSTTCCYRFINKKIPKQRLESYRRTTSS
               10        20           30        40        50       

                 70        80        90       100       110        
pF1KB6 HLP--AIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLN
       : :  :.:: :: ..:.:..:.. :::...:                             
CCDS11 HCPREAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL                  
        60        70        80        90                           

      120
pF1KB6 SQ

>>CCDS45652.1 CCL14 gene_id:6358|Hs108|chr17              (109 aa)
 initn: 263 init1: 161 opt: 215  Z-score: 306.1  bits: 61.9 E(32554): 1e-10
Smith-Waterman score: 230; 39.0% identity (63.8% similar) in 105 aa overlap (1-90:1-105)

               10               20            30           40      
pF1KB6 MKVSEAALSLLVLILII-------TSASRSQPKVPE----WVNTP---STCCLKYYEKVL
       ::.: ::. ...:: :        .: . ..::: .     :. :   : ::. :    .
CCDS45 MKISVAAIPFFLLITIALGTKTESSSQTGGKPKVVKIQLKLVGGPYHPSECCFTYTTYKI
               10        20        30        40        50        60

         50         60        70        80        90       100     
pF1KB6 PRRLVVGYRKALN-CHLPAIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVK
       ::. .. : .. . :  :.:.:.:::.. :::::.: :::.::::               
CCDS45 PRQRIMDYYETNSQCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN           
               70        80        90       100                    

         110       120
pF1KB6 IITAKNGQPQLLNSQ




120 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:31:37 2016 done: Sat Nov  5 17:31:37 2016
 Total Scan time:  1.650 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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