GENSCAN 1.0	Date run:  5-Nov-116	Time: 16:47:49

Sequence gi568815588f:30338939_30560833 : 221895 bp : 44.02% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.04 Intr -   1512   1288  225  0  0   67   84   139 0.707   9.58
 1.03 Intr -   2702   2530  173  0  2   59   78    60 0.730   1.76
 1.02 Intr -   3458   3422   37  2  1   94   71    36 0.706   0.34
 1.01 Init -   5229   5146   84  0  0   80  115    11 0.642   3.82
 1.00 Prom -   7578   7539   40                              -6.56

 2.00 Prom +   9051   9090   40                              -4.46
 2.01 Init +   9829   9846   18  0  0   72   89    34 0.299   1.07
 2.02 Intr +  17307  17444  138  2  0  100    0   248 0.958  17.86
 2.03 Term +  18216  18416  201  2  0   74   41   354 0.831  26.69
 2.04 PlyA +  21349  21354    6                               1.05

 3.11 PlyA -  21964  21959    6                               1.05
 3.10 Term -  25641  25472  170  1  2  -22   48   118 0.499  -5.16
 3.09 Intr -  26129  25768  362  1  2   98   89   237 0.604  19.66
 3.08 Intr -  26313  26207  107  0  2   24   24   143 0.915   0.51
 3.07 Intr -  26627  26583   45  2  0   85   80    55 0.857   3.01
 3.06 Intr -  27810  27612  199  2  1   44  -17   320 0.640  16.45
 3.05 Intr -  28940  28828  113  2  2   83   83    98 0.817   7.98
 3.04 Intr -  30487  30389   99  1  0  105   78    34 0.836   4.41
 3.03 Intr -  30742  30595  148  0  1   15   72   179 0.967   9.24
 3.02 Intr -  34280  34201   80  2  2  113  100    50 0.978   7.05
 3.01 Init -  35412  35365   48  0  0   74   93    56 0.998   5.65
 3.00 Prom -  38956  38917   40                              -6.26

 4.00 Prom +  39204  39243   40                              -7.06
 4.01 Init +  41236  41319   84  0  0   65   25   120 0.937   2.44
 4.02 Intr +  41822  41953  132  1  0   93   30    75 0.793   3.04
 4.03 Term +  44510  44644  135  1  0   91   43    98 0.831   3.62
 4.04 PlyA +  45173  45178    6                               1.05

 5.03 PlyA -  45766  45761    6                               1.05
 5.02 Term -  64752  64249  504  0  0  -22   48   474 0.494  26.84
 5.01 Init -  69431  69429    3  2  0  108   81     0 0.100   1.30
 5.00 Prom -  89760  89721   40                              -0.76

 6.00 Prom +  90409  90448   40                              -4.56
 6.01 Init +  95130  95440  311  2  2   71   89   210 0.966  14.19
 6.02 Intr +  95699  95810  112  2  1  131  117    40 0.963  11.58
 6.03 Intr +  98238  98274   37  2  1  104   36    15 0.726  -4.26
 6.04 Intr +  99978 100336  359  1  2  102   88   173 0.503  13.67
 6.05 Intr + 108844 109011  168  0  0  102   84    80 0.615   9.14
 6.06 Intr + 111320 111581  262  1  1   80  111   151 0.995  13.66
 6.07 Intr + 112700 112806  107  0  2   79   76    90 0.986   6.83
 6.08 Intr + 119146 119298  153  0  0   92   92   177 0.996  18.77
 6.09 Intr + 120317 120563  247  1  1   20   58   177 0.998   4.93
 6.10 Term + 121768 121898  131  2  2  106   49   190 0.949  15.24
 6.11 PlyA + 122827 122832    6                               1.05

 7.00 Prom + 123774 123813   40                              -5.56
 7.01 Init + 133947 134043   97  2  1   89   28   170 0.778   9.60
 7.02 Term + 139703 139851  149  0  2   52   37    74 0.250  -3.24
 7.03 PlyA + 141034 141039    6                               1.05

 8.08 PlyA - 141584 141579    6                               1.05
 8.07 Term - 155023 154881  143  2  2   77   43    97 0.644   2.19
 8.06 Intr - 155451 155310  142  0  1   74   81    61 0.950   3.93
 8.05 Intr - 157790 157632  159  2  0   26   49   154 0.431   5.48
 8.04 Intr - 158004 157940   65  1  2   61   68    47 0.239  -1.56
 8.03 Intr - 176632 176500  133  1  1  123   63    42 0.063   5.42
 8.02 Intr - 190812 190711  102  0  0   84   77    28 0.000   1.67
 8.01 Intr - 214407 214338   70  2  1  115   83    55 0.040   6.88

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  50207  50351  145  2  1   66   54   133 0.829   5.08
S.002 Term - 214407 214189  219  0  0  115   55   107 0.927   7.14


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815588f:30338939_30560833|GENSCAN_predicted_peptide_1|173_aa
MVQALYTHAMELRCDPKGSGETIKGFKQFRFLTVNCGPQIGFEDKIPKRRFSEMQNERRE
QAQRTVLIHCPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNGTH
TPSTAMETAIPFRSRFFNLKLKNQTSERSRVRSSNQLPRSNKQLFELLCYAES

>gi568815588f:30338939_30560833|GENSCAN_predicted_CDS_1|519_bp
atggtgcaagcactttatacccatgctatggagttgagatgtgatcctaaaggcagtggg
gaaaccattaaaggatttaagcagtttcggttcctcacagtcaactgtggtccacaaata
ggctttgaagacaagattcccaaaaggagattctctgagatgcaaaatgaaagacgagaa
caggcacagcggactgttttaatacattgcccagagaaaatcagtgaaaacaagtttctt
aaatatttatcccaatttggacctattaataatcatttcttctatgaaagctttggtctc
tatgctgtcgtagaattttgccaaaaggaaagcataggttcactgcagaatgggactcat
actccaagcacggccatggagactgcaattccattcagatcacgtttcttcaatctgaag
ttgaaaaaccagacttctgaacggtcacgcgtacggtcaagtaatcagttgccacgttca
aacaagcagctttttgaattactttgttatgcagaaagt

>gi568815588f:30338939_30560833|GENSCAN_predicted_peptide_2|118_aa
MQRLAQASKAEENASDSFMHFMDSQLERQMETTQNLVESYMAIVNKTLLDLVTKEFIFLE
LLDNLYSRGDQNTLMEESAEQAWRCDEMLCMQHVLKEALSIISDISTNTVSMVMGTRG

>gi568815588f:30338939_30560833|GENSCAN_predicted_CDS_2|357_bp
atgcagcgactggctcaggccagcaaggctgaggagaatgcctccgacagcttcatgcac
ttcatggactcacagctggagcggcaaatggagaccacccagaacctggtggaatcctac
atggccattgtcaacaagaccttgctggacctcgtgaccaaggagttcatcttcttggag
ctgctggacaacctgtactcgcgtggggaccagaacacgctgatggaggagtcggcagag
caggcatggcggtgtgatgagatgctgtgcatgcaacacgtgctgaaggaggcgctcagc
atcatcagtgacatcagcacaaacaccgtcagcatggtcatggggacccgtggatga

>gi568815588f:30338939_30560833|GENSCAN_predicted_peptide_3|456_aa
MLEETQQSKLAVAKKKIQDILKVLVSNLNHSNGVALSHWTNGRGTVWNGPGSPDRNFSLF
TIQSSSRCEAVLKRQLWQSIKARAQLEAHVTQMLEQVQLETDEYTQHLKGERARWQQRVW
KMSEENNENKSALQLEQQVKELQEKLGKLKETVTSAHPRRAGRVFLQVKLKSQEAQSLQQ
QGHQSLGHLQQYVAAYQQLTSEKEAQHRQLLLQTQLMDQLQQQEAWGKVVAFFNSAGASA
QEEQSGFMDLLKEKVDLKEWVEKLELRSIHLSGQADTISEKVNHNIRGPEGSAKDAAPGG
GGHHQAGPGQRGDEDGALQHLCGGGGGVGVSVGRGTGTSVAAEHPSLQVKLLELQELVLR
LAGDHNEGHGKFLAAAQNPADDPAPGAPAPQELGAADKQGGEAREGCPHDNPTAQQLMQL
LPVMRDPQEYPGLGSSPCMPFFYQAAKNRELNITII

>gi568815588f:30338939_30560833|GENSCAN_predicted_CDS_3|1371_bp
atgttggaagaaactcaacagagtaaattggctgtggccaagaaaaagattcaggacatt
ctgaaggtgctggtgtccaaccttaaccattccaatggggtagcgctctcccattggaca
aatggaaggggcactgtgtggaacggcccaggctccccagatcgaaacttctcactcttc
accatacagtcctcgagccgctgtgaagcagtcctcaagcggcagttatggcagtccata
aaggctcgggcacagctggaagcacacgtgacacagatgttggaacaagtccagctagag
acagatgaatatactcaacatctaaaaggagagagggcccggtggcagcagagggtatgg
aaaatgtcagaggagaacaacgagaataagagtgcactacagttggagcagcaagtaaag
gagctgcaggagaagctgggcaagctgaaggagactgtaacctctgcccatccaagaagg
gctgggagggtcttcctgcaggtgaagctgaagagccaagaggctcagagtctgcagcag
cagggacaccagtccctgggtcacctgcagcagtacgtggctgcctatcagcagctgacc
tctgagaaggaggcgcagcacaggcagttactgctgcagacccagctcatggaccagctg
cagcagcaggaagcttggggcaaagtggtggcgtttttcaactccgctggagccagtgcc
caggaggagcagagtggctttatggacctcctgaaggagaaggtggacctgaaggagtgg
gtggagaaactagagcttcgatccatccacctctcaggacaggcagacaccatcagtgag
aaagtaaatcacaacatacgagggccagagggcagcgccaaagacgcggcaccaggagga
ggaggacatcatcaggctggcccaggacaaagaggagatgaagatggggcattgcagcac
ctctgtgggggtgggggtggggtgggtgtgagcgtgggcaggggcactggcaccagcgtg
gcagctgagcacccctcccttcaggtgaaactgctggagctgcaggagctggtgttgcgg
cttgcaggcgatcacaacgaggggcatggcaaattcctggccgctgcccagaaccctgct
gatgatcctgctccaggggccccagcccctcaggagcttggggctgctgacaagcagggt
ggagaggccagggagggttgtccccatgacaaccccactgcacagcagctcatgcagctt
cttcctgtgatgcgggacccccaggagtacccaggcttgggcagcagtccctgcatgcca
ttcttttaccaggctgccaagaacagggagctaaacatcaccatcatctaa

>gi568815588f:30338939_30560833|GENSCAN_predicted_peptide_4|116_aa
MAAFSRSAGPILSLNPQEDAELQKEVAQKMESISKTNHRMSTKGQVLRKKKKKVLGTPDT
LEKTVDSQGPTPLQHIVSDEIHVRVTDLYPAENNNGATGAQPNTQNSRSLLESAYQ

>gi568815588f:30338939_30560833|GENSCAN_predicted_CDS_4|351_bp
atggcggccttttcccgctcggctgggccaatcctgtcgctgaacccgcaggaagatgcc
gagttgcagaaggaagtggcacagaaaatggaaagcatttcaaaaacgaatcatcggatg
tctacaaaaggccaggttttacgtaagaagaagaaaaaggttttaggcactcctgacact
cttgaaaagactgtggatagccagggccccacaccgctgcagcatatcgtgagtgatgag
atccatgtgcgggtgactgatctttacccggcagaaaataataatggggccactggagcc
cagccgaacacacagaactcaaggagcctcctggagtcagcgtatcagtag

>gi568815588f:30338939_30560833|GENSCAN_predicted_peptide_5|168_aa
MRCVHCAYFQCVQRESKPHMRKMLVYWMLEVCEEQCCEEEQCCKEEVFPLAMNHLHATCP
TSPPTRKAQLQLLVAVSMRLASKLRKTGPMTIEKMCIYTDHAVSPCQLRDWEVMVLGKLK
WDLAAVIAHDFLALILHRPTGLGQKACPDLFGCLCYRLHLCHVPTIQL

>gi568815588f:30338939_30560833|GENSCAN_predicted_CDS_5|507_bp
atgcgctgcgtgcactgcgcctacttccagtgcgtgcaaagggagagcaagccgcacatg
cggaagatgctggtttactggatgctggaggtgtgtgaggagcagtgctgtgaggaggag
cagtgctgtaaggaggaagtctttcccctggccatgaaccacctgcatgctacctgtcct
acgtccccacccacccgaaaggcacagttgcagctcttggttgcggtctccatgcggctg
gcctccaagctgcgtaagactgggcccatgaccattgagaaaatgtgcatctacaccgac
cacgctgtctctccctgccagttgcgggactgggaggtgatggtcctggggaagctcaaa
tgggacctggccgctgtgattgctcatgacttcttggccctcattctgcaccgaccgaca
ggccttggtcaaaaagcatgcccagatctttttggctgtctgtgctacagattacacctt
tgccatgtacccaccatccagttgtga

>gi568815588f:30338939_30560833|GENSCAN_predicted_peptide_6|628_aa
MEKSGRRWLASAAPPLGRLRRRESGAEQGGLSVRATRVSLVRSALDCAPRSGVRRPGSCF
CRCRRRIPVARRARLPQACSQHRTEPSGGRGWSARPAWERQGRSARAVLVWAVRGEAGTR
CHCASRCRRRLDGRTLPARDPMQSSYREEARGIDSPERATVMEYMSTGSDNKEEIDLLIK
HLNVSDVIDIMENLYASEEPAVYEPSLMTMCQDSNQNDERSKSLLLSGQEVPWLSSVRYG
TVEDLLAFANHISNTAKHFYGQRPQESGILLNMVITPQNGRYQIDSDVLLIPWKLTYRNI
GSDFIPRGAFGKVYLAQDIKTKKRMACKLIPVDQFKPSDVEIQACFRHENIAELYGAVLW
GETVHLFMEAGEGGSVLEKLESCGPMREFEIIWVTKHVLKGLDFLHSKKVIHHDIKPSNI
VFMSTKAVLVDFGLSVQMTEDVYFPKDLRGTEIYMSPEVILCRGHSTKADIYSLGATLIH
MQTGTPPWVKRYPRSAYPSYLYIIHKQAPPLEDIADDCSPGMRELIEASLERNPNHRPRA
ADLLKHEALNPPREDQPRCQSLDSALLERKRLLSRKELELPENIADSSCTGSTEESEMLK
RQRSLYIDLGALAGYFNLVRGPPTLEYG

>gi568815588f:30338939_30560833|GENSCAN_predicted_CDS_6|1887_bp
atggaaaagtcggggaggcggtggctggcgtccgctgcgccgcccctgggcaggctcaga
cgccgtgagtcaggggcagagcagggcggtctgagcgtgcgggcgacgcgggtctcactc
gtccgctccgctctggactgcgcgccacgctctggggtccggcgccctggttcctgcttc
tgccgctgccgccgccggatcccagtggcccggcgtgctcggctcccacaggcctgcagc
cagcatcgcaccgaaccttcggggggccgcggctggagcgctcggccggcgtgggagcgc
caaggccgcagcgccagggcagtgctggtctgggcagtgcgcggggaagcggggacccgc
tgtcactgcgcctcccgctgccgacgccgcctggacggccgcactctccctgcccgagac
ccgatgcaatcttcttaccgcgaagaagccaggggaatagactctccagaaagagcaaca
gtaatggagtacatgagcactggaagtgacaataaagaagagattgatttattaattaaa
catttaaatgtgtctgatgtaatagacattatggaaaatctttatgcaagtgaagagcca
gcagtttatgaacccagtctaatgaccatgtgtcaagacagtaatcaaaacgatgagcgt
tctaagtctctgctgcttagtggccaagaggtaccatggttgtcatcagtcagatatgga
actgtggaggatttgcttgcttttgcaaaccatatatccaacactgcaaagcatttttat
ggacaacgaccacaggaatctggaattttattaaacatggtcatcactccccaaaatgga
cgttaccaaatagattccgatgttctcctgatcccctggaagctgacttacaggaatatt
ggttctgattttattcctcggggcgcctttggaaaggtatacttggcacaagatataaag
acgaagaaaagaatggcgtgtaaactgatcccagtagatcaatttaagccatctgatgtg
gaaatccaggcttgcttccggcacgagaacatcgcagagctgtatggcgcagtcctgtgg
ggtgaaactgtccatctctttatggaagcaggcgagggagggtctgttctggagaaactg
gagagctgtggaccaatgagagaatttgaaattatttgggtgacaaagcatgttctcaag
ggacttgattttctacactcaaagaaagtgatccatcatgatattaaacctagcaacatt
gttttcatgtccacaaaagctgttttggtggattttggcctaagtgttcaaatgaccgaa
gatgtctattttcctaaggacctccgaggaacagagatttacatgagcccagaggtcatc
ctgtgcaggggccattcaaccaaagcagacatctacagcctgggggccacgctcatccac
atgcagacgggcaccccaccctgggtgaagcgctaccctcgctcagcctatccctcctac
ctgtacataatccacaagcaagcacctccactggaagacattgcagatgactgcagtcca
gggatgagagagctgatagaagcttccctggagagaaaccccaatcaccgcccaagagcc
gcagacctactaaaacatgaggccctgaacccgcccagagaggatcagccacgctgtcag
agtctggactctgccctcttggagcgcaagaggctgctgagtaggaaggagctggaactt
cctgagaacattgctgattcttcgtgcacaggaagcaccgaggaatctgagatgctcaag
aggcaacgctctctctacatcgacctcggcgctctggctggctacttcaatcttgttcgg
ggaccaccaacgcttgaatatggctga

>gi568815588f:30338939_30560833|GENSCAN_predicted_peptide_7|81_aa
MGAVLELGIPLGGGLGAVSPADDVALRVVMAGGWKEEKLEPAWEGPYLVLLTTKTAVRTA
KKDGLITPESRKHHPLQSRGP

>gi568815588f:30338939_30560833|GENSCAN_predicted_CDS_7|246_bp
atgggggctgtgttggagctgggcatccccctgggtggaggcctgggggctgtcagtcca
gctgatgatgtggcactgagagtagtgatggccggtgggtggaaagaagaaaaactcgag
ccagcctgggaaggaccctaccttgtgctgctaaccaccaagactgctgttcgtacagca
aaaaaggatggactcatcacacccgagtcaagaaagcatcaccccctccagagtcgtggg
ccatag

>gi568815588f:30338939_30560833|GENSCAN_predicted_peptide_8|271_aa
XTGVPNPQAIDQYWPIRNWATQQEVPYFLRVEDSGQAHPATGSLREPRRWVGRQEVAVVK
CFYPALLLLLEILVLEQHVSPTVLACRVQQYWCSPNPHSLSPCPIFKYHYIGDSVSTCEP
LIGWSTEPAKSRTTVGASHPLGIWKLLLTDLYEGWQKSEMQKADSNIPFALDQTYRQRVT
QALDSAQSGSVSMTHSVSPSVTLASSKVILAVLGNTCPCGSELTRDHRIYHSNQILLSVK
GGAINNYTNIVGVNHDCPKWDLMAIPLFADV

>gi568815588f:30338939_30560833|GENSCAN_predicted_CDS_8|816_bp
nngacaggggtccccaacccccaggccatagaccagtactggcctatcaggaactgggcc
acacagcaggaggttccttattttcttcgggtggaggactcaggccaggcgcacccagcc
actggcagcctccgagagccgcggcgctgggtaggaagacaggaagtggcggtggttaaa
tgcttctatccggcattgcttttgctactagaaatcctggttctggagcagcatgtctca
ccaaccgtcctggcctgcagagtccagcagtactggtgctcccctaacccacattcctta
tccccttgccccatcttcaaataccactacattggggattcagtttcaacatgtgaaccg
ctcattgggtggagcacagagccagccaagtcccggaccactgtgggagccagtcaccct
ctaggcatctggaagctgcttctaactgatctatatgaaggctggcagaagtctgagatg
caaaaagctgacagcaacatcccctttgccctggaccaaacttacagacagcgagtgact
caagccctggattctgcccagtctggttctgtctccatgacccactctgtgtcgccctct
gtgacactagcctcctccaaggtcatccttgctgtgctggggaacacatgtccttgtggt
tctgagctcaccagggaccacagaatttaccattcaaaccagatacttctgagcgtgaaa
gggggtgctattaataattacaccaacatagtaggtgtaaaccacgactgtcccaaatgg
gatctgatggccatcccactgtttgcagacgtatga