Result of FASTA (omim) for pF1KB7886
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7886, 651 aa
  1>>>pF1KB7886 651 - 651 aa - 651 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3697+/-0.000391; mu= 19.5238+/- 0.024
 mean_var=73.7459+/-14.509, 0's: 0 Z-trim(112.4): 13  B-trim: 121 in 1/54
 Lambda= 0.149350
 statistics sampled from 21310 (21316) to 21310 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.618), E-opt: 0.2 (0.25), width:  16
 Scan time: 11.110

The best scores are:                                      opt bits E(85289)
NP_060897 (OMIM: 605121) RNA polymerase I-specific ( 651) 4351 947.3       0
NP_001287993 (OMIM: 605121) RNA polymerase I-speci ( 621) 3636 793.2       0
XP_011520842 (OMIM: 605121) PREDICTED: RNA polymer ( 447) 3009 658.1  2e-188
XP_011520843 (OMIM: 605121) PREDICTED: RNA polymer ( 443) 2900 634.6 2.3e-181
XP_005255434 (OMIM: 605121) PREDICTED: RNA polymer ( 439) 2897 633.9 3.6e-181
XP_005255433 (OMIM: 605121) PREDICTED: RNA polymer ( 439) 2897 633.9 3.6e-181


>>NP_060897 (OMIM: 605121) RNA polymerase I-specific tra  (651 aa)
 initn: 4351 init1: 4351 opt: 4351  Z-score: 5064.2  bits: 947.3 E(85289):    0
Smith-Waterman score: 4351; 100.0% identity (100.0% similar) in 651 aa overlap (1-651:1-651)

               10        20        30        40        50        60
pF1KB7 MAAPLLHTRLPGDAAASSSAVKKLGASRTGISNMRALENDFFNSPPRKTVRFGGTVTEVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MAAPLLHTRLPGDAAASSSAVKKLGASRTGISNMRALENDFFNSPPRKTVRFGGTVTEVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LKYKKGETNDFELLKNQLLDPDIKDDQIINWLLEFRSSIMYLTKDFEQLISIILRLPWLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LKYKKGETNDFELLKNQLLDPDIKDDQIINWLLEFRSSIMYLTKDFEQLISIILRLPWLN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 RSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDVDVSDSDDEDDNLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 RSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDVDVSDSDDEDDNLP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 ANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLECYVHNLLRISVYFPTLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLECYVHNLLRISVYFPTLR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 HEILELIIEKLLKLDVNASRQGIEDAEETATQTCGGTDSTEGLFNMDEDEETEHETKAGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 HEILELIIEKLLKLDVNASRQGIEDAEETATQTCGGTDSTEGLFNMDEDEETEHETKAGP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 ERLDQMVHPVAERLDILMSLVLSYMKDVCYVDGKVDNGKTKDLYRDLINIFDKLLLPTHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ERLDQMVHPVAERLDILMSLVLSYMKDVCYVDGKVDNGKTKDLYRDLINIFDKLLLPTHA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 SCHVQFFMFYLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SCHVQFFMFYLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLI
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 TVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 TVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB7 EGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVI
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB7 RSTAGGDSVQICTNPLDTFFPFDPCVLKRSKKFIDPIYQVWEDMSAEELQEFKKPMKKDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 RSTAGGDSVQICTNPLDTFFPFDPCVLKRSKKFIDPIYQVWEDMSAEELQEFKKPMKKDI
              550       560       570       580       590       600

              610       620       630       640       650 
pF1KB7 VEDEDDDFLKGEVPQNDTVIGITPSSFDTHFRSPSSSVGSPPVLYMQPSPL
       :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 VEDEDDDFLKGEVPQNDTVIGITPSSFDTHFRSPSSSVGSPPVLYMQPSPL
              610       620       630       640       650 

>>NP_001287993 (OMIM: 605121) RNA polymerase I-specific   (621 aa)
 initn: 3626 init1: 3626 opt: 3636  Z-score: 4231.9  bits: 793.2 E(85289):    0
Smith-Waterman score: 4090; 95.4% identity (95.4% similar) in 651 aa overlap (1-651:1-621)

               10        20        30        40        50        60
pF1KB7 MAAPLLHTRLPGDAAASSSAVKKLGASRTGISNMRALENDFFNSPPRKTVRFGGTVTEVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAPLLHTRLPGDAAASSSAVKKLGASRTGISNMRALENDFFNSPPRKTVRFGGTVTEVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LKYKKGETNDFELLKNQLLDPDIKDDQIINWLLEFRSSIMYLTKDFEQLISIILRLPWLN
       ::::::::::::::::::::::::                              ::::::
NP_001 LKYKKGETNDFELLKNQLLDPDIK------------------------------RLPWLN
               70        80                                      90

              130       140       150       160       170       180
pF1KB7 RSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDVDVSDSDDEDDNLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDVDVSDSDDEDDNLP
              100       110       120       130       140       150

              190       200       210       220       230       240
pF1KB7 ANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLECYVHNLLRISVYFPTLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLECYVHNLLRISVYFPTLR
              160       170       180       190       200       210

              250       260       270       280       290       300
pF1KB7 HEILELIIEKLLKLDVNASRQGIEDAEETATQTCGGTDSTEGLFNMDEDEETEHETKAGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HEILELIIEKLLKLDVNASRQGIEDAEETATQTCGGTDSTEGLFNMDEDEETEHETKAGP
              220       230       240       250       260       270

              310       320       330       340       350       360
pF1KB7 ERLDQMVHPVAERLDILMSLVLSYMKDVCYVDGKVDNGKTKDLYRDLINIFDKLLLPTHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERLDQMVHPVAERLDILMSLVLSYMKDVCYVDGKVDNGKTKDLYRDLINIFDKLLLPTHA
              280       290       300       310       320       330

              370       380       390       400       410       420
pF1KB7 SCHVQFFMFYLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SCHVQFFMFYLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLI
              340       350       360       370       380       390

              430       440       450       460       470       480
pF1KB7 TVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLK
              400       410       420       430       440       450

              490       500       510       520       530       540
pF1KB7 EGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVI
              460       470       480       490       500       510

              550       560       570       580       590       600
pF1KB7 RSTAGGDSVQICTNPLDTFFPFDPCVLKRSKKFIDPIYQVWEDMSAEELQEFKKPMKKDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RSTAGGDSVQICTNPLDTFFPFDPCVLKRSKKFIDPIYQVWEDMSAEELQEFKKPMKKDI
              520       530       540       550       560       570

              610       620       630       640       650 
pF1KB7 VEDEDDDFLKGEVPQNDTVIGITPSSFDTHFRSPSSSVGSPPVLYMQPSPL
       :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEDEDDDFLKGEVPQNDTVIGITPSSFDTHFRSPSSSVGSPPVLYMQPSPL
              580       590       600       610       620 

>>XP_011520842 (OMIM: 605121) PREDICTED: RNA polymerase   (447 aa)
 initn: 3009 init1: 3009 opt: 3009  Z-score: 3503.8  bits: 658.1 E(85289): 2e-188
Smith-Waterman score: 3009; 100.0% identity (100.0% similar) in 447 aa overlap (205-651:1-447)

          180       190       200       210       220       230    
pF1KB7 EDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLECYVHNLLRISV
                                     ::::::::::::::::::::::::::::::
XP_011                               MPILVEKFPFVRKSERTLECYVHNLLRISV
                                             10        20        30

          240       250       260       270       280       290    
pF1KB7 YFPTLRHEILELIIEKLLKLDVNASRQGIEDAEETATQTCGGTDSTEGLFNMDEDEETEH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YFPTLRHEILELIIEKLLKLDVNASRQGIEDAEETATQTCGGTDSTEGLFNMDEDEETEH
               40        50        60        70        80        90

          300       310       320       330       340       350    
pF1KB7 ETKAGPERLDQMVHPVAERLDILMSLVLSYMKDVCYVDGKVDNGKTKDLYRDLINIFDKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ETKAGPERLDQMVHPVAERLDILMSLVLSYMKDVCYVDGKVDNGKTKDLYRDLINIFDKL
              100       110       120       130       140       150

          360       370       380       390       400       410    
pF1KB7 LLPTHASCHVQFFMFYLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLPTHASCHVQFFMFYLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARA
              160       170       180       190       200       210

          420       430       440       450       460       470    
pF1KB7 KFIPLITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KFIPLITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQL
              220       230       240       250       260       270

          480       490       500       510       520       530    
pF1KB7 LSGNLKEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LSGNLKEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR
              280       290       300       310       320       330

          540       550       560       570       580       590    
pF1KB7 QMLPVIRSTAGGDSVQICTNPLDTFFPFDPCVLKRSKKFIDPIYQVWEDMSAEELQEFKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QMLPVIRSTAGGDSVQICTNPLDTFFPFDPCVLKRSKKFIDPIYQVWEDMSAEELQEFKK
              340       350       360       370       380       390

          600       610       620       630       640       650 
pF1KB7 PMKKDIVEDEDDDFLKGEVPQNDTVIGITPSSFDTHFRSPSSSVGSPPVLYMQPSPL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PMKKDIVEDEDDDFLKGEVPQNDTVIGITPSSFDTHFRSPSSSVGSPPVLYMQPSPL
              400       410       420       430       440       

>>XP_011520843 (OMIM: 605121) PREDICTED: RNA polymerase   (443 aa)
 initn: 2900 init1: 2900 opt: 2900  Z-score: 3377.0  bits: 634.6 E(85289): 2.3e-181
Smith-Waterman score: 2900; 99.8% identity (100.0% similar) in 431 aa overlap (221-651:13-443)

              200       210       220       230       240       250
pF1KB7 QIIARYVPSTPWFLMPILVEKFPFVRKSERTLECYVHNLLRISVYFPTLRHEILELIIEK
                                     :.::::::::::::::::::::::::::::
XP_011                   MSQSLANNSKICTIECYVHNLLRISVYFPTLRHEILELIIEK
                                 10        20        30        40  

              260       270       280       290       300       310
pF1KB7 LLKLDVNASRQGIEDAEETATQTCGGTDSTEGLFNMDEDEETEHETKAGPERLDQMVHPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLKLDVNASRQGIEDAEETATQTCGGTDSTEGLFNMDEDEETEHETKAGPERLDQMVHPV
             50        60        70        80        90       100  

              320       330       340       350       360       370
pF1KB7 AERLDILMSLVLSYMKDVCYVDGKVDNGKTKDLYRDLINIFDKLLLPTHASCHVQFFMFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AERLDILMSLVLSYMKDVCYVDGKVDNGKTKDLYRDLINIFDKLLLPTHASCHVQFFMFY
            110       120       130       140       150       160  

              380       390       400       410       420       430
pF1KB7 LCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLV
            170       180       190       200       210       220  

              440       450       460       470       480       490
pF1KB7 NWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLKEGLQYLQSLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLKEGLQYLQSLN
            230       240       250       260       270       280  

              500       510       520       530       540       550
pF1KB7 FERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQ
            290       300       310       320       330       340  

              560       570       580       590       600       610
pF1KB7 ICTNPLDTFFPFDPCVLKRSKKFIDPIYQVWEDMSAEELQEFKKPMKKDIVEDEDDDFLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ICTNPLDTFFPFDPCVLKRSKKFIDPIYQVWEDMSAEELQEFKKPMKKDIVEDEDDDFLK
            350       360       370       380       390       400  

              620       630       640       650 
pF1KB7 GEVPQNDTVIGITPSSFDTHFRSPSSSVGSPPVLYMQPSPL
       :::::::::::::::::::::::::::::::::::::::::
XP_011 GEVPQNDTVIGITPSSFDTHFRSPSSSVGSPPVLYMQPSPL
            410       420       430       440   

>>XP_005255434 (OMIM: 605121) PREDICTED: RNA polymerase   (439 aa)
 initn: 2897 init1: 2897 opt: 2897  Z-score: 3373.5  bits: 633.9 E(85289): 3.6e-181
Smith-Waterman score: 2897; 99.3% identity (99.8% similar) in 432 aa overlap (220-651:8-439)

     190       200       210       220       230       240         
pF1KB7 LQIIARYVPSTPWFLMPILVEKFPFVRKSERTLECYVHNLLRISVYFPTLRHEILELIIE
                                     . .:::::::::::::::::::::::::::
XP_005                        MFQILMMKMIECYVHNLLRISVYFPTLRHEILELIIE
                                      10        20        30       

     250       260       270       280       290       300         
pF1KB7 KLLKLDVNASRQGIEDAEETATQTCGGTDSTEGLFNMDEDEETEHETKAGPERLDQMVHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KLLKLDVNASRQGIEDAEETATQTCGGTDSTEGLFNMDEDEETEHETKAGPERLDQMVHP
        40        50        60        70        80        90       

     310       320       330       340       350       360         
pF1KB7 VAERLDILMSLVLSYMKDVCYVDGKVDNGKTKDLYRDLINIFDKLLLPTHASCHVQFFMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VAERLDILMSLVLSYMKDVCYVDGKVDNGKTKDLYRDLINIFDKLLLPTHASCHVQFFMF
       100       110       120       130       140       150       

     370       380       390       400       410       420         
pF1KB7 YLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLL
       160       170       180       190       200       210       

     430       440       450       460       470       480         
pF1KB7 VNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLKEGLQYLQSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLKEGLQYLQSL
       220       230       240       250       260       270       

     490       500       510       520       530       540         
pF1KB7 NFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSV
       280       290       300       310       320       330       

     550       560       570       580       590       600         
pF1KB7 QICTNPLDTFFPFDPCVLKRSKKFIDPIYQVWEDMSAEELQEFKKPMKKDIVEDEDDDFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QICTNPLDTFFPFDPCVLKRSKKFIDPIYQVWEDMSAEELQEFKKPMKKDIVEDEDDDFL
       340       350       360       370       380       390       

     610       620       630       640       650 
pF1KB7 KGEVPQNDTVIGITPSSFDTHFRSPSSSVGSPPVLYMQPSPL
       ::::::::::::::::::::::::::::::::::::::::::
XP_005 KGEVPQNDTVIGITPSSFDTHFRSPSSSVGSPPVLYMQPSPL
       400       410       420       430         

>>XP_005255433 (OMIM: 605121) PREDICTED: RNA polymerase   (439 aa)
 initn: 2897 init1: 2897 opt: 2897  Z-score: 3373.5  bits: 633.9 E(85289): 3.6e-181
Smith-Waterman score: 2897; 99.3% identity (99.8% similar) in 432 aa overlap (220-651:8-439)

     190       200       210       220       230       240         
pF1KB7 LQIIARYVPSTPWFLMPILVEKFPFVRKSERTLECYVHNLLRISVYFPTLRHEILELIIE
                                     . .:::::::::::::::::::::::::::
XP_005                        MFQILMMKMIECYVHNLLRISVYFPTLRHEILELIIE
                                      10        20        30       

     250       260       270       280       290       300         
pF1KB7 KLLKLDVNASRQGIEDAEETATQTCGGTDSTEGLFNMDEDEETEHETKAGPERLDQMVHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KLLKLDVNASRQGIEDAEETATQTCGGTDSTEGLFNMDEDEETEHETKAGPERLDQMVHP
        40        50        60        70        80        90       

     310       320       330       340       350       360         
pF1KB7 VAERLDILMSLVLSYMKDVCYVDGKVDNGKTKDLYRDLINIFDKLLLPTHASCHVQFFMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VAERLDILMSLVLSYMKDVCYVDGKVDNGKTKDLYRDLINIFDKLLLPTHASCHVQFFMF
       100       110       120       130       140       150       

     370       380       390       400       410       420         
pF1KB7 YLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLL
       160       170       180       190       200       210       

     430       440       450       460       470       480         
pF1KB7 VNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLKEGLQYLQSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLKEGLQYLQSL
       220       230       240       250       260       270       

     490       500       510       520       530       540         
pF1KB7 NFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSV
       280       290       300       310       320       330       

     550       560       570       580       590       600         
pF1KB7 QICTNPLDTFFPFDPCVLKRSKKFIDPIYQVWEDMSAEELQEFKKPMKKDIVEDEDDDFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QICTNPLDTFFPFDPCVLKRSKKFIDPIYQVWEDMSAEELQEFKKPMKKDIVEDEDDDFL
       340       350       360       370       380       390       

     610       620       630       640       650 
pF1KB7 KGEVPQNDTVIGITPSSFDTHFRSPSSSVGSPPVLYMQPSPL
       ::::::::::::::::::::::::::::::::::::::::::
XP_005 KGEVPQNDTVIGITPSSFDTHFRSPSSSVGSPPVLYMQPSPL
       400       410       420       430         




651 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 16:21:14 2016 done: Sat Nov  5 16:21:16 2016
 Total Scan time: 11.110 Total Display time:  0.070

Function used was FASTA [36.3.4 Apr, 2011]
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