Result of FASTA (omim) for pF1KB7570
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7570, 279 aa
  1>>>pF1KB7570 279 - 279 aa - 279 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0328+/-0.000322; mu= 5.4873+/- 0.020
 mean_var=206.6712+/-42.251, 0's: 0 Z-trim(123.0): 242  B-trim: 2086 in 1/60
 Lambda= 0.089214
 statistics sampled from 41805 (42101) to 41805 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.809), E-opt: 0.2 (0.494), width:  16
 Scan time:  8.570

The best scores are:                                      opt bits E(85289)
NP_003649 (OMIM: 604823) homeobox protein BarH-lik ( 279) 1868 252.0 9.2e-67
XP_011541345 (OMIM: 604823) PREDICTED: homeobox pr ( 233) 1444 197.4 2.2e-50
XP_011541346 (OMIM: 604823) PREDICTED: homeobox pr ( 134)  913 128.8 5.4e-30
NP_067545 (OMIM: 603260) homeobox protein BarH-lik ( 254)  556 83.1 5.9e-16
NP_001091639 (OMIM: 611074) brain-specific homeobo ( 233)  298 49.9 5.5e-06
NP_068777 (OMIM: 142995) H2.0-like homeobox protei ( 488)  298 50.2 9.3e-06
NP_064447 (OMIM: 605212) barH-like 2 homeobox prot ( 387)  295 49.7   1e-05
NP_064448 (OMIM: 605211) barH-like 1 homeobox prot ( 327)  292 49.2 1.2e-05
NP_005212 (OMIM: 220600,600028) homeobox protein D ( 289)  282 47.9 2.7e-05
NP_005211 (OMIM: 104510,190320,600525) homeobox pr ( 287)  275 47.0 4.9e-05
NP_835221 (OMIM: 600029) homeobox protein DLX-1 is ( 255)  274 46.8   5e-05
XP_005250242 (OMIM: 220600,600028) PREDICTED: home ( 161)  270 46.1 5.1e-05
XP_016867292 (OMIM: 220600,600028) PREDICTED: home ( 161)  270 46.1 5.1e-05
NP_612138 (OMIM: 601911,616788) homeobox protein D ( 240)  272 46.5 5.7e-05
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443)  274 47.0 7.4e-05
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  274 47.0 7.4e-05
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  274 47.0 7.4e-05
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  274 47.0 7.4e-05
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  274 47.0 7.4e-05
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443)  274 47.0 7.4e-05
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  274 47.0 7.4e-05
NP_005512 (OMIM: 186770) T-cell leukemia homeobox  ( 330)  269 46.3 9.3e-05
NP_004396 (OMIM: 126255) homeobox protein DLX-2 [H ( 328)  267 46.0 0.00011
NP_005213 (OMIM: 600030) homeobox protein DLX-6 [H ( 293)  265 45.7 0.00012
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264)  262 45.3 0.00015
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264)  262 45.3 0.00015
NP_001158727 (OMIM: 142994,176450) motor neuron an ( 189)  258 44.6 0.00017
NP_001925 (OMIM: 601911,616788) homeobox protein D ( 168)  256 44.3 0.00018
XP_016879780 (OMIM: 601911,616788) PREDICTED: home ( 168)  256 44.3 0.00018
NP_001476 (OMIM: 601135) homeobox protein GBX-2 is ( 348)  261 45.3  0.0002
NP_005506 (OMIM: 142994,176450) motor neuron and p ( 401)  262 45.4  0.0002
NP_660328 (OMIM: 606727) homeobox protein Nkx-2.3  ( 364)  260 45.1 0.00022
NP_001182446 (OMIM: 186770) T-cell leukemia homeob ( 257)  254 44.2  0.0003
XP_011538046 (OMIM: 186770) PREDICTED: T-cell leuk ( 342)  254 44.3 0.00036
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358)  252 44.1 0.00045
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358)  252 44.1 0.00045
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  252 44.2 0.00051
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  252 44.2 0.00051
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  252 44.2 0.00051
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431)  252 44.2 0.00051
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  252 44.2 0.00051
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  252 44.2 0.00051
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299)  249 43.6 0.00052
NP_005915 (OMIM: 600535) homeobox protein MOX-2 [H ( 304)  249 43.7 0.00052
NP_066305 (OMIM: 604640) T-cell leukemia homeobox  ( 291)  248 43.5 0.00055
NP_001180 (OMIM: 602183,613330) homeobox protein N ( 333)  248 43.6 0.00061
NP_001129743 (OMIM: 217095,611770) homeobox protei ( 301)  247 43.4 0.00062
XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  252 44.3 0.00063
XP_016880050 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  252 44.3 0.00063
XP_016880046 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  252 44.3 0.00063


>>NP_003649 (OMIM: 604823) homeobox protein BarH-like 2   (279 aa)
 initn: 1868 init1: 1868 opt: 1868  Z-score: 1319.6  bits: 252.0 E(85289): 9.2e-67
Smith-Waterman score: 1868; 100.0% identity (100.0% similar) in 279 aa overlap (1-279:1-279)

               10        20        30        40        50        60
pF1KB7 MHCHAELRLSSPGQLKAARRRYKTFMIDEILSKETCDYFEKLSLYSVCPSLVVRPKPLHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MHCHAELRLSSPGQLKAARRRYKTFMIDEILSKETCDYFEKLSLYSVCPSLVVRPKPLHS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 CTGSPSLRAYPLLSVITRQPTVISHLVPATPGIAQALSCHQVTEAVSAEAPGGEALASSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 CTGSPSLRAYPLLSVITRQPTVISHLVPATPGIAQALSCHQVTEAVSAEAPGGEALASSE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SETEQPTPRQKKPRRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQVKTW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SETEQPTPRQKKPRRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQVKTW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 YQNRRMKWKKMVLKGGQEAPTKPKGRPKKNSIPTSEEIEAEEKMNSQAQGQEQLEPSQGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 YQNRRMKWKKMVLKGGQEAPTKPKGRPKKNSIPTSEEIEAEEKMNSQAQGQEQLEPSQGQ
              190       200       210       220       230       240

              250       260       270         
pF1KB7 EELCEAQEPKARDVPLEMAEPPDPPQELPIPSSEPPPLS
       :::::::::::::::::::::::::::::::::::::::
NP_003 EELCEAQEPKARDVPLEMAEPPDPPQELPIPSSEPPPLS
              250       260       270         

>>XP_011541345 (OMIM: 604823) PREDICTED: homeobox protei  (233 aa)
 initn: 1444 init1: 1444 opt: 1444  Z-score: 1025.7  bits: 197.4 E(85289): 2.2e-50
Smith-Waterman score: 1444; 99.5% identity (100.0% similar) in 218 aa overlap (62-279:16-233)

              40        50        60        70        80        90 
pF1KB7 SKETCDYFEKLSLYSVCPSLVVRPKPLHSCTGSPSLRAYPLLSVITRQPTVISHLVPATP
                                     .:::::::::::::::::::::::::::::
XP_011                MHINCLEDRMSERKVSGSPSLRAYPLLSVITRQPTVISHLVPATP
                              10        20        30        40     

             100       110       120       130       140       150 
pF1KB7 GIAQALSCHQVTEAVSAEAPGGEALASSESETEQPTPRQKKPRRSRTIFTELQLMGLEKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GIAQALSCHQVTEAVSAEAPGGEALASSESETEQPTPRQKKPRRSRTIFTELQLMGLEKK
          50        60        70        80        90       100     

             160       170       180       190       200       210 
pF1KB7 FQKQKYLSTPDRLDLAQSLGLTQLQVKTWYQNRRMKWKKMVLKGGQEAPTKPKGRPKKNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FQKQKYLSTPDRLDLAQSLGLTQLQVKTWYQNRRMKWKKMVLKGGQEAPTKPKGRPKKNS
         110       120       130       140       150       160     

             220       230       240       250       260       270 
pF1KB7 IPTSEEIEAEEKMNSQAQGQEQLEPSQGQEELCEAQEPKARDVPLEMAEPPDPPQELPIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IPTSEEIEAEEKMNSQAQGQEQLEPSQGQEELCEAQEPKARDVPLEMAEPPDPPQELPIP
         170       180       190       200       210       220     

               
pF1KB7 SSEPPPLS
       ::::::::
XP_011 SSEPPPLS
         230   

>>XP_011541346 (OMIM: 604823) PREDICTED: homeobox protei  (134 aa)
 initn: 913 init1: 913 opt: 913  Z-score: 659.4  bits: 128.8 E(85289): 5.4e-30
Smith-Waterman score: 913; 100.0% identity (100.0% similar) in 134 aa overlap (146-279:1-134)

         120       130       140       150       160       170     
pF1KB7 LASSESETEQPTPRQKKPRRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQL
                                     ::::::::::::::::::::::::::::::
XP_011                               MGLEKKFQKQKYLSTPDRLDLAQSLGLTQL
                                             10        20        30

         180       190       200       210       220       230     
pF1KB7 QVKTWYQNRRMKWKKMVLKGGQEAPTKPKGRPKKNSIPTSEEIEAEEKMNSQAQGQEQLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QVKTWYQNRRMKWKKMVLKGGQEAPTKPKGRPKKNSIPTSEEIEAEEKMNSQAQGQEQLE
               40        50        60        70        80        90

         240       250       260       270         
pF1KB7 PSQGQEELCEAQEPKARDVPLEMAEPPDPPQELPIPSSEPPPLS
       ::::::::::::::::::::::::::::::::::::::::::::
XP_011 PSQGQEELCEAQEPKARDVPLEMAEPPDPPQELPIPSSEPPPLS
              100       110       120       130    

>>NP_067545 (OMIM: 603260) homeobox protein BarH-like 1   (254 aa)
 initn: 612 init1: 407 opt: 556  Z-score: 407.5  bits: 83.1 E(85289): 5.9e-16
Smith-Waterman score: 556; 45.6% identity (65.8% similar) in 237 aa overlap (21-242:25-253)

                   10        20        30                  40      
pF1KB7     MHCHAELRLSSPGQLKAARRRYKTFMIDEILSKE----------TCDYFEKLSLYS
                               ::..:::.:::..           .     .:  ..
NP_067 MQRPGEPGAARFGPPEGCADHRPHRYRSFMIEEILTEPPGPKGAAPAAAAAAAGELLKFG
               10        20        30        40        50        60

         50        60           70        80        90       100   
pF1KB7 VCPSLVVRPKPLHSCTGSPSLRA---YPLLSVITRQPTVISHLVPATPGIAQALSCHQVT
       :   :..::   :  . .    :   .::  .      . : :. : ::.  : .  .. 
NP_067 VQALLAARPFHSHLAVLKAEQAAVFKFPLAPLGCS--GLSSALLAAGPGLPGAAGAPHLP
               70        80        90         100       110        

           110       120       130       140       150       160   
pF1KB7 EAVSAEAPGGEALASSESETEQPTPRQKKPRRSRTIFTELQLMGLEKKFQKQKYLSTPDR
         .. .   :.  :.. .:   :  . :: :::::.:::::::::::.:.::::::::::
NP_067 LELQLR---GKLEAAGPGE---PGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDR
      120          130          140       150       160       170  

           170       180       190        200       210       220  
pF1KB7 LDLAQSLGLTQLQVKTWYQNRRMKWKKMVLKGGQ-EAPTKPKGRPKKNSIPTSEEIEAEE
       .:::.::::.:::::::::::::::::.::.::  :.:::::::::::::::::..  .:
NP_067 IDLAESLGLSQLQVKTWYQNRRMKWKKIVLQGGGLESPTKPKGRPKKNSIPTSEQLTEQE
            180       190       200       210       220       230  

            230        240       250       260       270         
pF1KB7 KMNSQAQGQE-QLEPSQGQEELCEAQEPKARDVPLEMAEPPDPPQELPIPSSEPPPLS
       . ..  .  :   :::. ..:                                     
NP_067 RAKDAEKPAEVPGEPSDRSRED                                    
            240       250                                        

>>NP_001091639 (OMIM: 611074) brain-specific homeobox pr  (233 aa)
 initn: 306 init1: 260 opt: 298  Z-score: 228.5  bits: 49.9 E(85289): 5.5e-06
Smith-Waterman score: 306; 34.0% identity (57.0% similar) in 235 aa overlap (7-236:3-214)

               10        20        30        40        50        60
pF1KB7 MHCHAELRLSSPGQLKAARRRYKTFMIDEILSKETCDYFEKLSLYSVCPSLVVRPKPLHS
             : ..:: .  :. .:  .:.:..::            :..  :   : :  . :
NP_001     MNLNFTSPLH-PASSQRPTSFFIEDIL------------LHKPKPLREVAPDHFAS
                   10         20                    30        40   

                  70        80        90       100       110       
pF1KB7 CTGS--PSL-RAYPLLSVITRQPTVISHLVPATPGIAQALSCHQVTEAVSAEAPGGEALA
         .:  : :  .:::. .    ::.   :.: .    .  . :.    ...  :   :: 
NP_001 SLASRVPLLDYGYPLMPT----PTL---LAPHAHHPLHKGDHHHPYFLTTSGMPV-PALF
            50        60               70        80        90      

       120       130       140       150       160       170       
pF1KB7 SSESETEQPTPRQKKPRRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQV
          ...: :  . .. :..::.:.. :: ::::.:. :.:::::.:..:: .:.:.. ::
NP_001 PHPQHAELPGKHCRR-RKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQV
         100       110        120       130       140       150    

       180       190       200       210        220       230      
pF1KB7 KTWYQNRRMKWKKMVLKGGQEAPTKPKGRPKKNSIPT-SEEIEAEEKMNSQAQGQEQL-E
       :::.:::::: ::. :. .:. :  : :  . .. :  ::   : :   :   :   : :
NP_001 KTWFQNRRMKHKKQ-LRKSQDEPKAPDGPESPEGSPRGSEAATAAEARLSLPAGPFVLTE
          160        170       180       190       200       210   

         240       250       260       270         
pF1KB7 PSQGQEELCEAQEPKARDVPLEMAEPPDPPQELPIPSSEPPPLS
       :                                           
NP_001 PEDEVDIGDEGELGSGPHVL                        
           220       230                           

>>NP_068777 (OMIM: 142995) H2.0-like homeobox protein [H  (488 aa)
 initn: 237 init1: 237 opt: 298  Z-score: 224.4  bits: 50.2 E(85289): 9.3e-06
Smith-Waterman score: 322; 30.7% identity (58.0% similar) in 231 aa overlap (13-240:164-382)

                                 10        20        30        40  
pF1KB7                   MHCHAELRLSSPGQLKAARRRYKTFMIDEILSKETCDYFEKL
                                     :.  :   .   : ::.::: :     .. 
NP_068 QQQQPPPPPRAGALQPPASGTRVVPNPHHSGSAPAPSSKDLKFGIDRILSAEFDPKVKEG
           140       150       160       170       180       190   

             50          60         70        80        90         
pF1KB7 SLYSVCPSLVV--RPKPLHSCTGSPSL-RAYPLLSVITRQPTVISHLVPATPGIAQALSC
       .      ::..  ::  .:    .::  . .  :. :..  ...: :     . .:    
NP_068 NTLRDLTSLLTGGRPAGVHLSGLQPSAGQFFASLDPINEASAILSPLNSNPRNSVQ----
           200       210       220       230       240             

     100       110       120       130       140       150         
pF1KB7 HQVTEAVSAEAPGGEALASSESETEQPTPRQKKPRRSRTIFTELQLMGLEKKFQKQKYLS
       ::  ..     ::  :. ....   .:   ..:   ::..:..::  ::::.:. :::..
NP_068 HQFQDTF----PGPYAVLTKDT---MPQTYKRKRSWSRAVFSNLQRKGLEKRFEIQKYVT
     250           260          270       280       290       300  

     160       170       180       190       200       210         
pF1KB7 TPDRLDLAQSLGLTQLQVKTWYQNRRMKWKKMVLKGGQEAPTKPKGRPKKNSIPTSEEIE
        ::: .::  ::::. :::.:.:::::::..     .:.   :  :.  ... :...  :
NP_068 KPDRKQLAAMLGLTDAQVKVWFQNRRMKWRHSKEAQAQKDKDKEAGEKPSGGAPAADG-E
            310       320       330       340       350       360  

     220       230       240       250       260       270         
pF1KB7 AEEKMNSQAQGQEQLEPSQGQEELCEAQEPKARDVPLEMAEPPDPPQELPIPSSEPPPLS
        .:.  :...:. . : :...                                       
NP_068 QDERSPSRSEGEAESESSDSESLDMAPSDTERTEGSERSLHQTTVIKAPVTGALITASSA
             370       380       390       400       410       420 

>>NP_064447 (OMIM: 605212) barH-like 2 homeobox protein   (387 aa)
 initn: 271 init1: 271 opt: 295  Z-score: 223.6  bits: 49.7 E(85289): 1e-05
Smith-Waterman score: 299; 48.5% identity (72.7% similar) in 99 aa overlap (97-195:205-294)

         70        80        90       100       110       120      
pF1KB7 LRAYPLLSVITRQPTVISHLVPATPGIAQALSCHQVTEAVSAEAPGGEALASSESETEQP
                                     ..:: . :       : . ..::.   :.:
NP_064 SNAVHESFRPKLEQEDSKTKLDKREDSQSDIKCHGTKEE------GDREITSSR---ESP
          180       190       200       210             220        

        130       140       150       160       170       180      
pF1KB7 TPRQKKPRRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQVKTWYQNRRM
         : ::::..:: :.. ::  ::..:..:::::. ::.::: .:.::. :::::::::: 
NP_064 PVRAKKPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRT
         230       240       250       260       270       280     

        190       200       210       220       230       240      
pF1KB7 KWKKMVLKGGQEAPTKPKGRPKKNSIPTSEEIEAEEKMNSQAQGQEQLEPSQGQEELCEA
       :::...  :                                                   
NP_064 KWKRQTAVGLELLAEAGNYSALQRMFPSPYFYHPSLLGSMDSTTAAAAAAAMYSSMYRTP
         290       300       310       320       330       340     

>>NP_064448 (OMIM: 605211) barH-like 1 homeobox protein   (327 aa)
 initn: 341 init1: 292 opt: 292  Z-score: 222.5  bits: 49.2 E(85289): 1.2e-05
Smith-Waterman score: 296; 35.3% identity (58.8% similar) in 187 aa overlap (12-195:80-240)

                                  10           20        30        
pF1KB7                    MHCHAELRLSSPGQLKA---ARRRYKTFMIDEILSKETCDY
                                     ::::.:   .:   ..:.: .::.   :  
NP_064 SPASPGRDCLETGTPRPGGASGPGLDSHLQPGQLSAPAQSRTVTSSFLIRDILAD--CK-
      50        60        70        80        90       100         

       40        50        60        70        80        90        
pF1KB7 FEKLSLYSVCPSLVVRPKPLHSCTGSPSLRAYPLLSVITRQPTVISHLVPATPGIAQALS
                 :  .  :   .: .:.:.    :   . ..    .   .  . . :.. :
NP_064 ----------PLAACAP---YSSSGQPAA-PEPGGRLAAKAAEDFRDKLDKSGSNASSDS
                  110          120        130       140       150  

      100       110       120       130       140       150        
pF1KB7 CHQVTEAVSAEAPGGEALASSESETEQPTPRQKKPRRSRTIFTELQLMGLEKKFQKQKYL
        ..: :       : . ..::.   ..:  : ::::..:: ::. ::  ::..:..::::
NP_064 EYKVKEE------GDREISSSR---DSPPVRLKKPRKARTAFTDHQLAQLERSFERQKYL
                  160          170       180       190       200   

      160       170       180       190       200       210        
pF1KB7 STPDRLDLAQSLGLTQLQVKTWYQNRRMKWKKMVLKGGQEAPTKPKGRPKKNSIPTSEEI
       :. ::..:: ::.::. :::::::::: :::...  :                       
NP_064 SVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYFY
           210       220       230       240       250       260   

      220       230       240       250       260       270        
pF1KB7 EAEEKMNSQAQGQEQLEPSQGQEELCEAQEPKARDVPLEMAEPPDPPQELPIPSSEPPPL
                                                                   
NP_064 PQSLVSNLDPGAALYLYRGPSAPPPALQRPLVPRILIHGLQGASEPPPPLPPLAGVLPRA
           270       280       290       300       310       320   

>>NP_005212 (OMIM: 220600,600028) homeobox protein DLX-5  (289 aa)
 initn: 287 init1: 243 opt: 282  Z-score: 216.2  bits: 47.9 E(85289): 2.7e-05
Smith-Waterman score: 282; 32.4% identity (56.9% similar) in 204 aa overlap (84-279:86-282)

            60        70        80        90       100       110   
pF1KB7 RPKPLHSCTGSPSLRAYPLLSVITRQPTVISHLVPATPGIAQALSCHQVTEAVSAEAPGG
                                     :. . :    . : : ::   : . ..:. 
NP_005 HGYCSPTSASYGKALNPYQYQYHGVNGSAGSYPAKAYADYSYASSYHQYGGAYN-RVPS-
          60        70        80        90       100        110    

           120       130            140       150       160        
pF1KB7 EALASSESETEQPTPRQ-----KKPRRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQ
        :  . :.:. .:  :.     :: :. :::.. .:: .:...::: .::. :.: .:: 
NP_005 -ATNQPEKEVTEPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAA
            120       130       140       150       160       170  

      170       180       190       200         210        220     
pF1KB7 SLGLTQLQVKTWYQNRRMKWKKMVLKGGQEAPTK-PKGR-PKKNSIPTSEEI-EAEEKMN
       :::::: ::: :.::.: : :: ..:.:.  : . :..  :   . : :  . : . .  
NP_005 SLGLTQTQVKIWFQNKRSKIKK-IMKNGEMPPEHSPSSSDPMACNSPQSPAVWEPQGSSR
            180       190        200       210       220       230 

         230       240       250       260       270               
pF1KB7 SQAQGQEQLEPSQGQEELCEAQEPKARDVPLEMAEPPDPPQELPIPSSEPPPLS      
       : ..  .   :...:       : .:       .   .  ..:: :.:   ::.      
NP_005 SLSHHPHAHPPTSNQSPASSYLENSA---SWYTSAASSINSHLPPPGSLQHPLALASGTL
             240       250          260       270       280        

NP_005 Y
        

>>NP_005211 (OMIM: 104510,190320,600525) homeobox protei  (287 aa)
 initn: 298 init1: 243 opt: 275  Z-score: 211.4  bits: 47.0 E(85289): 4.9e-05
Smith-Waterman score: 279; 35.3% identity (60.6% similar) in 170 aa overlap (120-277:116-281)

      90       100       110       120       130       140         
pF1KB7 TPGIAQALSCHQVTEAVSAEAPGGEALASSESETEQPTPRQKKPRRSRTIFTELQLMGLE
                                     :.:... . . :: :. :::..  :: .:.
NP_005 YTYGASYRQYGAYREQPLPAQDPVSVKEEPEAEVRMVNGKPKKVRKPRTIYSSYQLAALQ
          90       100       110       120       130       140     

     150       160       170       180       190       200         
pF1KB7 KKFQKQKYLSTPDRLDLAQSLGLTQLQVKTWYQNRRMKWKKMVLKGGQEAPTK--PKGRP
       ..::: .::. :.: .:: .::::: ::: :.:::: :.::.  .:  :.: .  :..  
NP_005 RRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYKNG--EVPLEHSPNNSD
         150       160       170       180       190         200   

         210       220       230           240         250         
pF1KB7 KK--NSIPTSEEIEAEEKMNSQAQGQEQLEP----SQGQEELCEAQEP--KARDV--PLE
       .   :: : :  .    . .. : .. :: :    : .   : .  .   .:...  :  
NP_005 SMACNS-PPSPALWDTSSHSTPAPARSQLPPPLPYSASPSYLDDPTNSWYHAQNLSGPHL
            210       220       230       240       250       260  

       260       270             
pF1KB7 MAEPPDPPQELPIPSSEPPPLS    
       . .::.:   :   :  :::      
NP_005 QQQPPQPAT-LHHASPGPPPNPGAVY
            270        280       




279 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 16:18:26 2016 done: Sat Nov  5 16:18:28 2016
 Total Scan time:  8.570 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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