Result of FASTA (ccds) for pF1KB9984
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9984, 711 aa
  1>>>pF1KB9984 711 - 711 aa - 711 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6462+/-0.000908; mu= 17.5497+/- 0.054
 mean_var=66.7061+/-12.954, 0's: 0 Z-trim(105.4): 15  B-trim: 0 in 0/50
 Lambda= 0.157033
 statistics sampled from 8406 (8412) to 8406 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.258), width:  16
 Scan time:  3.820

The best scores are:                                      opt bits E(32554)
CCDS33747.1 LTF gene_id:4057|Hs108|chr3            ( 710) 4864 1111.3       0
CCDS82763.1 LTF gene_id:4057|Hs108|chr3            ( 708) 4840 1105.9       0
CCDS56251.1 LTF gene_id:4057|Hs108|chr3            ( 666) 4571 1044.9       0
CCDS3080.1 TF gene_id:7018|Hs108|chr3              ( 698) 1861 431.0  3e-120
CCDS3325.1 MELTF gene_id:4241|Hs108|chr3           ( 738)  899 213.0 1.3e-54
CCDS3326.1 MELTF gene_id:4241|Hs108|chr3           ( 302)  416 103.5   5e-22


>>CCDS33747.1 LTF gene_id:4057|Hs108|chr3                 (710 aa)
 initn: 4750 init1: 4750 opt: 4864  Z-score: 5949.1  bits: 1111.3 E(32554):    0
Smith-Waterman score: 4864; 99.6% identity (99.9% similar) in 711 aa overlap (1-711:1-710)

               10        20        30        40        50        60
pF1KB9 MKLVFLVLLFLGALGLCLAGRRRRSVQWCTVSQPEATKCFQWQRNMRRVRGPPVSCIKRD
       ::::::::::::::::::::::: :::::.:::::::::::::::::.::::::::::::
CCDS33 MKLVFLVLLFLGALGLCLAGRRR-SVQWCAVSQPEATKCFQWQRNMRKVRGPPVSCIKRD
               10        20         30        40        50         

               70        80        90       100       110       120
pF1KB9 SPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKK
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB9 GGSFQLNELQGLKSCHTGLRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFSASCVPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GGSFQLNELQGLKSCHTGLRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFSASCVPG
     120       130       140       150       160       170         

              190       200       210       220       230       240
pF1KB9 ADKGQFPNLCRLCAGTGENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDLSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ADKGQFPNLCRLCAGTGENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDLSD
     180       190       200       210       220       230         

              250       260       270       280       290       300
pF1KB9 EAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGK
     240       250       260       270       280       290         

              310       320       330       340       350       360
pF1KB9 DKSPKFQLFGSPSGQKDLLFKDSAIGFSRVPPRIDSGLYLGSGYFTAIQNLRKSEEEVAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DKSPKFQLFGSPSGQKDLLFKDSAIGFSRVPPRIDSGLYLGSGYFTAIQNLRKSEEEVAA
     300       310       320       330       340       350         

              370       380       390       400       410       420
pF1KB9 RRARVVWCAVGEQELRKCNQWSGLSEGSVTCSSASTTEDCIALVLKGEADAMSLDGGYVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RRARVVWCAVGEQELRKCNQWSGLSEGSVTCSSASTTEDCIALVLKGEADAMSLDGGYVY
     360       370       380       390       400       410         

              430       440       450       460       470       480
pF1KB9 TAGKCGLVPVLAENYKSQQSSDPDPNCVDRPVEGYLAVAVVRRSDTSLTWNSVKGKKSCH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TAGKCGLVPVLAENYKSQQSSDPDPNCVDRPVEGYLAVAVVRRSDTSLTWNSVKGKKSCH
     420       430       440       450       460       470         

              490       500       510       520       530       540
pF1KB9 TAVDRTAGWNIPMGLLFNQTGSCKFDEYFSQSCAPGSDPRSNLCALCIGDEQGENKCVPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TAVDRTAGWNIPMGLLFNQTGSCKFDEYFSQSCAPGSDPRSNLCALCIGDEQGENKCVPN
     480       490       500       510       520       530         

              550       560       570       580       590       600
pF1KB9 SNERYYGYTGAFRCLAENAGDVAFVKDVTVLQNTDGNNNEAWAKDLKLADFALLCLDGKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SNERYYGYTGAFRCLAENAGDVAFVKDVTVLQNTDGNNNEAWAKDLKLADFALLCLDGKR
     540       550       560       570       580       590         

              610       620       630       640       650       660
pF1KB9 KPVTEARSCHLAMAPNHAVVSRMDKVERLKQVLLHQQAKFGRNGSDCPDKFCLFQSETKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KPVTEARSCHLAMAPNHAVVSRMDKVERLKQVLLHQQAKFGRNGSDCPDKFCLFQSETKN
     600       610       620       630       640       650         

              670       680       690       700       710 
pF1KB9 LLFNDNTECLARLHGKTTYEKYLGPQYVAGITNLKKCSTSPLLEACEFLRK
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LLFNDNTECLARLHGKTTYEKYLGPQYVAGITNLKKCSTSPLLEACEFLRK
     660       670       680       690       700       710

>>CCDS82763.1 LTF gene_id:4057|Hs108|chr3                 (708 aa)
 initn: 2631 init1: 2631 opt: 4840  Z-score: 5919.7  bits: 1105.9 E(32554):    0
Smith-Waterman score: 4840; 99.3% identity (99.6% similar) in 711 aa overlap (1-711:1-708)

               10        20        30        40        50        60
pF1KB9 MKLVFLVLLFLGALGLCLAGRRRRSVQWCTVSQPEATKCFQWQRNMRRVRGPPVSCIKRD
       ::::::::::::::::::::::: :::::.:::::::::::::::::.::::::::::::
CCDS82 MKLVFLVLLFLGALGLCLAGRRR-SVQWCAVSQPEATKCFQWQRNMRKVRGPPVSCIKRD
               10        20         30        40        50         

               70        80        90       100       110       120
pF1KB9 SPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKK
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB9 GGSFQLNELQGLKSCHTGLRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFSASCVPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GGSFQLNELQGLKSCHTGLRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFSASCVPG
     120       130       140       150       160       170         

              190       200       210       220       230       240
pF1KB9 ADKGQFPNLCRLCAGTGENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDLSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ADKGQFPNLCRLCAGTGENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDLSD
     180       190       200       210       220       230         

              250       260       270       280       290       300
pF1KB9 EAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGK
     240       250       260       270       280       290         

              310       320       330       340       350       360
pF1KB9 DKSPKFQLFGSPSGQKDLLFKDSAIGFSRVPPRIDSGLYLGSGYFTAIQNLRKSEEEVAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 DKSPKFQLFGSPSGQKDLLFKDSAIGFSRVPPRIDSGLYLGSGYFTAIQNLRKSEEEVAA
     300       310       320       330       340       350         

              370       380       390       400       410       420
pF1KB9 RRARVVWCAVGEQELRKCNQWSGLSEGSVTCSSASTTEDCIALVLKGEADAMSLDGGYVY
       ::::::::::::::::::::::::::::::::::::::::::  ::::::::::::::::
CCDS82 RRARVVWCAVGEQELRKCNQWSGLSEGSVTCSSASTTEDCIA--LKGEADAMSLDGGYVY
     360       370       380       390       400         410       

              430       440       450       460       470       480
pF1KB9 TAGKCGLVPVLAENYKSQQSSDPDPNCVDRPVEGYLAVAVVRRSDTSLTWNSVKGKKSCH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TAGKCGLVPVLAENYKSQQSSDPDPNCVDRPVEGYLAVAVVRRSDTSLTWNSVKGKKSCH
       420       430       440       450       460       470       

              490       500       510       520       530       540
pF1KB9 TAVDRTAGWNIPMGLLFNQTGSCKFDEYFSQSCAPGSDPRSNLCALCIGDEQGENKCVPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TAVDRTAGWNIPMGLLFNQTGSCKFDEYFSQSCAPGSDPRSNLCALCIGDEQGENKCVPN
       480       490       500       510       520       530       

              550       560       570       580       590       600
pF1KB9 SNERYYGYTGAFRCLAENAGDVAFVKDVTVLQNTDGNNNEAWAKDLKLADFALLCLDGKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SNERYYGYTGAFRCLAENAGDVAFVKDVTVLQNTDGNNNEAWAKDLKLADFALLCLDGKR
       540       550       560       570       580       590       

              610       620       630       640       650       660
pF1KB9 KPVTEARSCHLAMAPNHAVVSRMDKVERLKQVLLHQQAKFGRNGSDCPDKFCLFQSETKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KPVTEARSCHLAMAPNHAVVSRMDKVERLKQVLLHQQAKFGRNGSDCPDKFCLFQSETKN
       600       610       620       630       640       650       

              670       680       690       700       710 
pF1KB9 LLFNDNTECLARLHGKTTYEKYLGPQYVAGITNLKKCSTSPLLEACEFLRK
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LLFNDNTECLARLHGKTTYEKYLGPQYVAGITNLKKCSTSPLLEACEFLRK
       660       670       680       690       700        

>>CCDS56251.1 LTF gene_id:4057|Hs108|chr3                 (666 aa)
 initn: 4571 init1: 4571 opt: 4571  Z-score: 5590.8  bits: 1044.9 E(32554):    0
Smith-Waterman score: 4571; 99.8% identity (100.0% similar) in 666 aa overlap (46-711:1-666)

          20        30        40        50        60        70     
pF1KB9 LCLAGRRRRSVQWCTVSQPEATKCFQWQRNMRRVRGPPVSCIKRDSPIQCIQAIAENRAD
                                     ::.:::::::::::::::::::::::::::
CCDS56                               MRKVRGPPVSCIKRDSPIQCIQAIAENRAD
                                             10        20        30

          80        90       100       110       120       130     
pF1KB9 AVTLDGGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLNELQGLKSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 AVTLDGGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLNELQGLKSC
               40        50        60        70        80        90

         140       150       160       170       180       190     
pF1KB9 HTGLRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFSASCVPGADKGQFPNLCRLCAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 HTGLRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFSASCVPGADKGQFPNLCRLCAG
              100       110       120       130       140       150

         200       210       220       230       240       250     
pF1KB9 TGENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDLSDEAERDEYELLCPDNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TGENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDLSDEAERDEYELLCPDNT
              160       170       180       190       200       210

         260       270       280       290       300       310     
pF1KB9 RKPVDKFKDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RKPVDKFKDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQ
              220       230       240       250       260       270

         320       330       340       350       360       370     
pF1KB9 KDLLFKDSAIGFSRVPPRIDSGLYLGSGYFTAIQNLRKSEEEVAARRARVVWCAVGEQEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KDLLFKDSAIGFSRVPPRIDSGLYLGSGYFTAIQNLRKSEEEVAARRARVVWCAVGEQEL
              280       290       300       310       320       330

         380       390       400       410       420       430     
pF1KB9 RKCNQWSGLSEGSVTCSSASTTEDCIALVLKGEADAMSLDGGYVYTAGKCGLVPVLAENY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RKCNQWSGLSEGSVTCSSASTTEDCIALVLKGEADAMSLDGGYVYTAGKCGLVPVLAENY
              340       350       360       370       380       390

         440       450       460       470       480       490     
pF1KB9 KSQQSSDPDPNCVDRPVEGYLAVAVVRRSDTSLTWNSVKGKKSCHTAVDRTAGWNIPMGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KSQQSSDPDPNCVDRPVEGYLAVAVVRRSDTSLTWNSVKGKKSCHTAVDRTAGWNIPMGL
              400       410       420       430       440       450

         500       510       520       530       540       550     
pF1KB9 LFNQTGSCKFDEYFSQSCAPGSDPRSNLCALCIGDEQGENKCVPNSNERYYGYTGAFRCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LFNQTGSCKFDEYFSQSCAPGSDPRSNLCALCIGDEQGENKCVPNSNERYYGYTGAFRCL
              460       470       480       490       500       510

         560       570       580       590       600       610     
pF1KB9 AENAGDVAFVKDVTVLQNTDGNNNEAWAKDLKLADFALLCLDGKRKPVTEARSCHLAMAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 AENAGDVAFVKDVTVLQNTDGNNNEAWAKDLKLADFALLCLDGKRKPVTEARSCHLAMAP
              520       530       540       550       560       570

         620       630       640       650       660       670     
pF1KB9 NHAVVSRMDKVERLKQVLLHQQAKFGRNGSDCPDKFCLFQSETKNLLFNDNTECLARLHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 NHAVVSRMDKVERLKQVLLHQQAKFGRNGSDCPDKFCLFQSETKNLLFNDNTECLARLHG
              580       590       600       610       620       630

         680       690       700       710 
pF1KB9 KTTYEKYLGPQYVAGITNLKKCSTSPLLEACEFLRK
       ::::::::::::::::::::::::::::::::::::
CCDS56 KTTYEKYLGPQYVAGITNLKKCSTSPLLEACEFLRK
              640       650       660      

>>CCDS3080.1 TF gene_id:7018|Hs108|chr3                   (698 aa)
 initn: 2547 init1: 626 opt: 1861  Z-score: 2272.4  bits: 431.0 E(32554): 3e-120
Smith-Waterman score: 2890; 60.1% identity (80.7% similar) in 715 aa overlap (1-710:1-697)

               10        20        30        40           50       
pF1KB9 MKLVFLVLLFLGALGLCLAGRRRRSVQWCTVSQPEATKCFQWQRNMRRV---RGPPVSCI
       :.:.  .::  ..::::::    ..:.::.::. ::::: ... .:. :    :: :.:.
CCDS30 MRLAVGALLVCAVLGLCLA-VPDKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACV
               10         20        30        40        50         

        60        70        80        90       100       110       
pF1KB9 KRDSPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVAV
       :. : ..::.::: :.:::::::.:..:.: ::: .:.::.:: ::....:.: ::::::
CCDS30 KKASYLDCIRAIAANEADAVTLDAGLVYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAV
      60        70        80        90       100       110         

       120       130       140       150       160       170       
pF1KB9 VKKGGSFQLNELQGLKSCHTGLRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFSASC
       ::: ..::.:.:.: ::::::: :.::::.::: :  . .   : .:.: ::: :::.::
CCDS30 VKKDSGFQMNQLRGKKSCHTGLGRSAGWNIPIGLL--YCDLPEPRKPLEKAVANFFSGSC
     120       130       140       150         160       170       

       180       190       200       210       220       230       
pF1KB9 VPGADKGQFPNLCRLCAGTGENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFED
       .: ::  .::.::.:: :     :. :. . ::.::::::::.::::::::...::.::.
CCDS30 APCADGTDFPQLCQLCPG-----CGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTIFEN
       180       190            200       210       220       230  

       240       250       260       270       280       290       
pF1KB9 LSDEAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEK
       :...:.::.::::: ::::::::..::::::.::::.:::::..:::: ::.:: ::::.
CCDS30 LANKADRDQYELLCLDNTRKPVDEYKDCHLAQVPSHTVVARSMGGKEDLIWELLNQAQEH
            240       250       260       270       280       290  

       300       310       320       330       340       350       
pF1KB9 FGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVPPRIDSGLYLGSGYFTAIQNLRKSE-E
       :::::: .::::.:: : ::::::::: :: .::::.:. .:::  : :::.:::..   
CCDS30 FGKDKSKEFQLFSSPHG-KDLLFKDSAHGFLKVPPRMDAKMYLGYEYVTAIRNLREGTCP
            300        310       320       330       340       350 

        360        370       380       390       400       410     
pF1KB9 EVAARRARVV-WCAVGEQELRKCNQWSGLSEGSVTCSSASTTEDCIALVLKGEADAMSLD
       :. . . . : :::....:  ::..::  : :.. : :: ::::::: ...:::::::::
CCDS30 EAPTDECKPVKWCALSHHERLKCDEWSVNSVGKIECVSAETTEDCIAKIMNGEADAMSLD
             360       370       380       390       400       410 

         420       430       440       450       460       470     
pF1KB9 GGYVYTAGKCGLVPVLAENYKSQQSSDPDPNCVDRPVEGYLAVAVVRRSDTSLTWNSVKG
       ::.:: ::::::::::::::.   .::   :: : :  ::.:.:::..: ..:::...::
CCDS30 GGFVYIAGKCGLVPVLAENYN---KSD---NCEDTPEAGYFAIAVVKKSASDLTWDNLKG
             420       430             440       450       460     

         480       490       500       510       520       530     
pF1KB9 KKSCHTAVDRTAGWNIPMGLLFNQTGSCKFDEYFSQSCAPGSDPRSNLCALCIGDEQGEN
       :::::::: ::::::::::::.:. . :.:::.::..:::::   :.:: ::.:.  : :
CCDS30 KKSCHTAVGRTAGWNIPMGLLYNKINHCRFDEFFSEGCAPGSKKDSSLCKLCMGS--GLN
         470       480       490       500       510       520     

         540       550       560       570       580       590     
pF1KB9 KCVPNSNERYYGYTGAFRCLAENAGDVAFVKDVTVLQNTDGNNNEAWAKDLKLADFALLC
        : ::..: :::::::::::.:. :::::::  :: ::: :.: . :::.:.  :. :::
CCDS30 LCEPNNKEGYYGYTGAFRCLVEK-GDVAFVKHQTVPQNTGGKNPDPWAKNLNEKDYELLC
           530       540        550       560       570       580  

         600       610       620       630       640       650     
pF1KB9 LDGKRKPVTEARSCHLAMAPNHAVVSRMDKVERLKQVLLHQQAKFGRNGSDCPDKFCLFQ
       ::: :::: :  .:::: :::::::.: ::   ....: .::  :: : .::  .::::.
CCDS30 LDGTRKPVEEYANCHLARAPNHAVVTRKDKEACVHKILRQQQHLFGSNVTDCSGNFCLFR
            590       600       610       620       630       640  

         660       670       680       690       700       710 
pF1KB9 SETKNLLFNDNTECLARLHGKTTYEKYLGPQYVAGITNLKKCSTSPLLEACEFLRK
       ::::.::: :.: :::.:: ..::::::: .:: .. ::.::::: ::::: : : 
CCDS30 SETKDLLFRDDTVCLAKLHDRNTYEKYLGEEYVKAVGNLRKCSTSSLLEACTFRRP
            650       660       670       680       690        

>>CCDS3325.1 MELTF gene_id:4241|Hs108|chr3                (738 aa)
 initn: 1033 init1: 461 opt: 899  Z-score: 1094.1  bits: 213.0 E(32554): 1.3e-54
Smith-Waterman score: 1645; 40.4% identity (67.1% similar) in 730 aa overlap (12-698:6-710)

               10        20           30        40        50       
pF1KB9 MKLVFLVLLFLGALGLCLAGRRRRS---VQWCTVSQPEATKCFQWQRNMRRVR-GPPVSC
                  ::: : :: :   .   :.::..:.::  :: . .. .:..   : . :
CCDS33       MRGPSGALWLLLALRTVLGGMEVRWCATSDPEQHKCGNMSEAFREAGIQPSLLC
                     10        20        30        40        50    

         60        70        80        90       100       110      
pF1KB9 IKRDSPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVA
       ..  :  .:.: :: ..:::.::::: :::::   . :.::..:::  ...  : :::::
CCDS33 VRGTSADHCVQLIAAQEADAITLDGGAIYEAG-KEHGLKPVVGEVY--DQEVGTSYYAVA
           60        70        80         90         100       110 

        120       130       140       150       160       170      
pF1KB9 VVKKGGSFQLNELQGLKSCHTGLRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFSAS
       ::....   .. :.:.::::::. ::.:::::.: :      .     .  ::. .:..:
CCDS33 VVRRSSHVTIDTLKGVKSCHTGINRTVGWNVPVGYLVESGRLSVMGCDVLKAVSDYFGGS
             120       130       140       150       160       170 

        180        190         200       210       220       230   
pF1KB9 CVPGADKGQFP-NLCRLCAG--TGENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIREST
       ::::: . ..  .::::: :  .::. :  :  : :..:::::.:: .:::::::...::
CCDS33 CVPGAGETSYSESLCRLCRGDSSGEGVCDKSPLERYYDYSGAFRCLAEGAGDVAFVKHST
             180       190       200       210       220       230 

           240               250       260       270       280     
pF1KB9 VFEDLSDEAE--------RDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARSVNGKED
       :.:. . ..          ...:::: :..:  : ....:::::::.::::.:. .    
CCDS33 VLENTDGKTLPSWGQALLSQDFELLCRDGSRADVTEWRQCHLARVPAHAVVVRA-DTDGG
             240       250       260       270       280        290

         290       300       310        320       330          340 
pF1KB9 AIWNLLRQAQEKFGKDKSPKFQLFGSPS-GQKDLLFKDSAIGFSRVPPRIDSGLY---LG
        :. :: ..:. :... : .::.:.: . ::::::::::.   :.. : : .  :   ::
CCDS33 LIFRLLNEGQRLFSHEGS-SFQMFSSEAYGQKDLLFKDST---SELVP-IATQTYEAWLG
              300        310       320          330        340     

             350       360       370       380            390      
pF1KB9 SGYFTAIQNLRKSEEEVAARRARVVWCAVGEQELRKCNQWS-----GLSEGSVTCSSAST
         :. :...:  . ...      . ::...  :..::.. .        .  . : ::..
CCDS33 HEYLHAMKGLLCDPNRLPPY---LRWCVLSTPEIQKCGDMAVAFRRQRLKPEIQCVSAKS
         350       360          370       380       390       400  

        400       410       420        430       440       450     
pF1KB9 TEDCIALVLKGEADAMSLDGGYVYTAGKC-GLVPVLAENYKSQQSSDPDPNCVDRPVEGY
        . :.  .   ..::..:.:  .:::::  ::::. .:.:  ..::.           .:
CCDS33 PQHCMERIQAEQVDAVTLSGEDIYTAGKTYGLVPAAGEHYAPEDSSN-----------SY
            410       420       430       440                  450 

         460        470       480       490           500          
pF1KB9 LAVAVVRR-SDTSLTWNSVKGKKSCHTAVDRTAGWNIPMGLL----FNQTGSCKF----D
        .:::::: :. ..: . ..::.:::..    :::..:.: :    : .  .:      .
CCDS33 YVVAVVRRDSSHAFTLDELRGKRSCHAGFGSPAGWDVPVGALIQRGFIRPKDCDVLTAVS
             460       470       480       490       500       510 

        510       520          530       540       550       560   
pF1KB9 EYFSQSCAPGSDPR---SNLCALCIGDEQGENKCVPNSNERYYGYTGAFRCLAENAGDVA
       :.:. ::.: ..:.   :.:::::.:::::.:::: ::.:::::: ::::::.:::::::
CCDS33 EFFNASCVPVNNPKNYPSSLCALCVGDEQGRNKCVGNSQERYYGYRGAFRCLVENAGDVA
             520       530       540       550       560       570 

           570       580       590       600       610       620   
pF1KB9 FVKDVTVLQNTDGNNNEAWAKDLKLADFALLCLDGKRKPVTEARSCHLAMAPNHAVVSRM
       ::. .::..::.:.:.: :: .:.  :. ::: .: :  :..  .:.::. : :::. : 
CCDS33 FVRHTTVFDNTNGHNSEPWAAELRSEDYELLCPNGARAEVSQFAACNLAQIPPHAVMVRP
             580       590       600       610       620       630 

            630       640       650          660       670         
pF1KB9 D-KVERLKQVLLHQQAKFGRNGSDCPDKFCLFQSET---KNLLFNDNTECLARLHGKTTY
       : ..  .  .: . :  :: . .   . : .:.: .   ..:::.: :   . .  ::::
CCDS33 DTNIFTVYGLLDKAQDLFGDDHNK--NGFKMFDSSNYHGQDLLFKDATVRAVPVGEKTTY
             640       650         660       670       680         

     680       690         700       710                
pF1KB9 EKYLGPQYVAGITNL--KKCSTSPLLEACEFLRK               
       . .:: .:::.. ..  ..::                            
CCDS33 RGWLGLDYVAALEGMSSQQCSGAAAPAPGAPLLPLLLPALAARLLPPAL
     690       700       710       720       730        

>>CCDS3326.1 MELTF gene_id:4241|Hs108|chr3                (302 aa)
 initn: 525 init1: 240 opt: 416  Z-score: 508.9  bits: 103.5 E(32554): 5e-22
Smith-Waterman score: 665; 39.0% identity (64.8% similar) in 315 aa overlap (12-319:6-301)

               10        20           30        40        50       
pF1KB9 MKLVFLVLLFLGALGLCLAGRRRRS---VQWCTVSQPEATKCFQWQRNMRRVR-GPPVSC
                  ::: : :: :   .   :.::..:.::  :: . .. .:..   : . :
CCDS33       MRGPSGALWLLLALRTVLGGMEVRWCATSDPEQHKCGNMSEAFREAGIQPSLLC
                     10        20        30        40        50    

         60        70        80        90       100       110      
pF1KB9 IKRDSPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVA
       ..  :  .:.: :: ..:::.::::: :::::   . :.::..:::  :    : :::::
CCDS33 VRGTSADHCVQLIAAQEADAITLDGGAIYEAG-KEHGLKPVVGEVYDQEVG--TSYYAVA
           60        70        80         90       100         110 

        120       130       140       150       160       170      
pF1KB9 VVKKGGSFQLNELQGLKSCHTGLRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFSAS
       ::....   .. :.:.::::::. ::.:::::.: :      .     .  ::. .:..:
CCDS33 VVRRSSHVTIDTLKGVKSCHTGINRTVGWNVPVGYLVESGRLSVMGCDVLKAVSDYFGGS
             120       130       140       150       160       170 

        180        190         200       210       220       230   
pF1KB9 CVPGADKGQFP-NLCRLCAG--TGENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIREST
       ::::: . ..  .::::: :  .::. :  :  : :..:::::.:: .:::::::...::
CCDS33 CVPGAGETSYSESLCRLCRGDSSGEGVCDKSPLERYYDYSGAFRCLAEGAGDVAFVKHST
             180       190       200       210       220       230 

           240       250       260       270       280       290   
pF1KB9 VFEDLSDEAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARSVNGKEDAIWNLLRQ
       :.:. .::.         :  .:. .   .. . .. :.:  . :.. ..    :   . 
CCDS33 VLEN-TDES---------P--SRRQTWTRSEEEEGECPAHEEARRTMRSSAGQAW---KW
                       240         250       260       270         

           300       310       320       330       340       350   
pF1KB9 AQEKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVPPRIDSGLYLGSGYFTAIQNLRK
       :  .  .:.: : . ::. . ..:.:                                  
CCDS33 APVHRPQDESDKGE-FGKRAKSRDMLG                                 
        280       290        300                                   




711 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 16:04:10 2016 done: Sat Nov  5 16:04:11 2016
 Total Scan time:  3.820 Total Display time:  0.130

Function used was FASTA [36.3.4 Apr, 2011]
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