Result of FASTA (omim) for pF1KB5839
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5839, 203 aa
  1>>>pF1KB5839 203 - 203 aa - 203 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0305+/-0.00034; mu= 14.9717+/- 0.021
 mean_var=64.3221+/-12.666, 0's: 0 Z-trim(114.7): 7  B-trim: 174 in 1/57
 Lambda= 0.159917
 statistics sampled from 24757 (24764) to 24757 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.29), width:  16
 Scan time:  5.980

The best scores are:                                      opt bits E(85289)
NP_056263 (OMIM: 616467) protein DPCD isoform 2 [H ( 203) 1356 321.2 7.3e-88
NP_001316672 (OMIM: 616467) protein DPCD isoform 3 ( 191)  909 218.0 7.7e-57
NP_001316673 (OMIM: 616467) protein DPCD isoform 4 ( 170)  907 217.5 9.7e-57
NP_001316671 (OMIM: 616467) protein DPCD isoform 1 ( 214)  757 183.0   3e-46
NP_001316674 (OMIM: 616467) protein DPCD isoform 5 ( 114)  452 112.4 2.8e-25
NP_001316675 (OMIM: 616467) protein DPCD isoform 6 (  63)  315 80.7 5.7e-16


>>NP_056263 (OMIM: 616467) protein DPCD isoform 2 [Homo   (203 aa)
 initn: 1356 init1: 1356 opt: 1356  Z-score: 1698.4  bits: 321.2 E(85289): 7.3e-88
Smith-Waterman score: 1356; 100.0% identity (100.0% similar) in 203 aa overlap (1-203:1-203)

               10        20        30        40        50        60
pF1KB5 MAVTGWLESLRTAQKTALLQDGRRKVHYLFPDGKEMAEEYDEKTSELLVRKWRVKSALGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MAVTGWLESLRTAQKTALLQDGRRKVHYLFPDGKEMAEEYDEKTSELLVRKWRVKSALGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 MGQWQLEVGDPAPLGAGNLGPELIKESNANPIFMRKDTKMSFQWRIRNLPYPKDVYSVSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MGQWQLEVGDPAPLGAGNLGPELIKESNANPIFMRKDTKMSFQWRIRNLPYPKDVYSVSV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 DQKERCIIVRTTNKKYYKKFSIPDLDRHQLPLDDALLSFAHANCTLIISYQKPKEVVVAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 DQKERCIIVRTTNKKYYKKFSIPDLDRHQLPLDDALLSFAHANCTLIISYQKPKEVVVAE
              130       140       150       160       170       180

              190       200   
pF1KB5 SELQKELKKVKTAHSNDGDCKTQ
       :::::::::::::::::::::::
NP_056 SELQKELKKVKTAHSNDGDCKTQ
              190       200   

>>NP_001316672 (OMIM: 616467) protein DPCD isoform 3 [Ho  (191 aa)
 initn: 925 init1: 909 opt: 909  Z-score: 1141.4  bits: 218.0 E(85289): 7.7e-57
Smith-Waterman score: 1238; 94.1% identity (94.1% similar) in 203 aa overlap (1-203:1-191)

               10        20        30        40        50        60
pF1KB5 MAVTGWLESLRTAQKTALLQDGRRKVHYLFPDGKEMAEEYDEKTSELLVRKWRVKSALGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAVTGWLESLRTAQKTALLQDGRRKVHYLFPDGKEMAEEYDEKTSELLVRKWRVKSALGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 MGQWQLEVGDPAPLGAGNLGPELIKESNANPIFMRKDTKMSFQWRIRNLPYPKDVYSVSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGQWQLEVGDPAPLGAGNLGPELIKESNANPIFMRKDTKMSFQWRIRNLPYPKDVYSVSV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 DQKERCIIVRTTNKKYYKKFSIPDLDRHQLPLDDALLSFAHANCTLIISYQKPKEVVVAE
       :::::::::::::::            :::::::::::::::::::::::::::::::::
NP_001 DQKERCIIVRTTNKK------------HQLPLDDALLSFAHANCTLIISYQKPKEVVVAE
              130                   140       150       160        

              190       200   
pF1KB5 SELQKELKKVKTAHSNDGDCKTQ
       :::::::::::::::::::::::
NP_001 SELQKELKKVKTAHSNDGDCKTQ
      170       180       190 

>>NP_001316673 (OMIM: 616467) protein DPCD isoform 4 [Ho  (170 aa)
 initn: 907 init1: 907 opt: 907  Z-score: 1139.7  bits: 217.5 E(85289): 9.7e-57
Smith-Waterman score: 907; 100.0% identity (100.0% similar) in 135 aa overlap (1-135:1-135)

               10        20        30        40        50        60
pF1KB5 MAVTGWLESLRTAQKTALLQDGRRKVHYLFPDGKEMAEEYDEKTSELLVRKWRVKSALGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAVTGWLESLRTAQKTALLQDGRRKVHYLFPDGKEMAEEYDEKTSELLVRKWRVKSALGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 MGQWQLEVGDPAPLGAGNLGPELIKESNANPIFMRKDTKMSFQWRIRNLPYPKDVYSVSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGQWQLEVGDPAPLGAGNLGPELIKESNANPIFMRKDTKMSFQWRIRNLPYPKDVYSVSV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 DQKERCIIVRTTNKKYYKKFSIPDLDRHQLPLDDALLSFAHANCTLIISYQKPKEVVVAE
       :::::::::::::::                                             
NP_001 DQKERCIIVRTTNKKRTGWRLLWTPLAMRCAGVHGTPSEIDTSYLWMTPC          
              130       140       150       160       170          

>>NP_001316671 (OMIM: 616467) protein DPCD isoform 1 [Ho  (214 aa)
 initn: 1342 init1: 757 opt: 757  Z-score: 951.2  bits: 183.0 E(85289): 3e-46
Smith-Waterman score: 1324; 94.9% identity (94.9% similar) in 214 aa overlap (1-203:1-214)

               10        20        30        40        50        60
pF1KB5 MAVTGWLESLRTAQKTALLQDGRRKVHYLFPDGKEMAEEYDEKTSELLVRKWRVKSALGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAVTGWLESLRTAQKTALLQDGRRKVHYLFPDGKEMAEEYDEKTSELLVRKWRVKSALGA
               10        20        30        40        50        60

               70        80        90                  100         
pF1KB5 MGQWQLEVGDPAPLGAGNLGPELIKESNAN-----------PIFMRKDTKMSFQWRIRNL
       ::::::::::::::::::::::::::::::           :::::::::::::::::::
NP_001 MGQWQLEVGDPAPLGAGNLGPELIKESNANEQSSSWICLLQPIFMRKDTKMSFQWRIRNL
               70        80        90       100       110       120

     110       120       130       140       150       160         
pF1KB5 PYPKDVYSVSVDQKERCIIVRTTNKKYYKKFSIPDLDRHQLPLDDALLSFAHANCTLIIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PYPKDVYSVSVDQKERCIIVRTTNKKYYKKFSIPDLDRHQLPLDDALLSFAHANCTLIIS
              130       140       150       160       170       180

     170       180       190       200   
pF1KB5 YQKPKEVVVAESELQKELKKVKTAHSNDGDCKTQ
       ::::::::::::::::::::::::::::::::::
NP_001 YQKPKEVVVAESELQKELKKVKTAHSNDGDCKTQ
              190       200       210    

>>NP_001316674 (OMIM: 616467) protein DPCD isoform 5 [Ho  (114 aa)
 initn: 452 init1: 452 opt: 452  Z-score: 574.9  bits: 112.4 E(85289): 2.8e-25
Smith-Waterman score: 452; 98.6% identity (100.0% similar) in 69 aa overlap (135-203:46-114)

          110       120       130       140       150       160    
pF1KB5 RIRNLPYPKDVYSVSVDQKERCIIVRTTNKKYYKKFSIPDLDRHQLPLDDALLSFAHANC
                                     .:::::::::::::::::::::::::::::
NP_001 SEQPTRSGLVGGFSGPLWPCGVQVCMAPPLRYYKKFSIPDLDRHQLPLDDALLSFAHANC
          20        30        40        50        60        70     

          170       180       190       200   
pF1KB5 TLIISYQKPKEVVVAESELQKELKKVKTAHSNDGDCKTQ
       :::::::::::::::::::::::::::::::::::::::
NP_001 TLIISYQKPKEVVVAESELQKELKKVKTAHSNDGDCKTQ
          80        90       100       110    

>>NP_001316675 (OMIM: 616467) protein DPCD isoform 6 [Ho  (63 aa)
 initn: 315 init1: 315 opt: 315  Z-score: 407.7  bits: 80.7 E(85289): 5.7e-16
Smith-Waterman score: 315; 98.0% identity (98.0% similar) in 50 aa overlap (1-50:1-50)

               10        20        30        40        50        60
pF1KB5 MAVTGWLESLRTAQKTALLQDGRRKVHYLFPDGKEMAEEYDEKTSELLVRKWRVKSALGA
       :::::::::::::::::::::::::::::::::::::::::::::::: :          
NP_001 MAVTGWLESLRTAQKTALLQDGRRKVHYLFPDGKEMAEEYDEKTSELLERPECGLMGRQE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 MGQWQLEVGDPAPLGAGNLGPELIKESNANPIFMRKDTKMSFQWRIRNLPYPKDVYSVSV
                                                                   
NP_001 DLT                                                         
                                                                   




203 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 15:07:38 2016 done: Sat Nov  5 15:07:39 2016
 Total Scan time:  5.980 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]
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