GENSCAN 1.0	Date run:  5-Nov-116	Time: 14:44:13

Sequence gi568815597r:39797375_40001888 : 204514 bp : 46.84% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  20004  20050   47  2  2   64   85    53 0.135   1.53
 1.02 Intr +  22263  22369  107  0  2   38   50   115 0.166   2.56
 1.03 Intr +  28189  28329  141  2  0   83   94    42 0.471   4.62
 1.04 Term +  40503  40600   98  1  2   94   42    53 0.053  -0.57
 1.05 PlyA +  40688  40693    6                               1.05

 2.13 PlyA -  41105  41100    6                               1.05
 2.12 Term -  44539  44370  170  2  2   51   48    97 0.878   0.04
 2.11 Intr -  46844  46727  118  2  1  111   80   111 0.999  12.64
 2.10 Intr -  47266  47157  110  2  2   99   91    32 0.989   4.60
 2.09 Intr -  49923  49846   78  1  0   76   92    20 0.612   0.72
 2.08 Intr -  50286  50174  113  2  2   78   70    70 0.920   4.22
 2.07 Intr -  50717  50612  106  0  1   21   66    89 0.713  -0.73
 2.06 Intr -  52887  52745  143  2  2   56   92    70 0.925   4.20
 2.05 Intr -  55502  55357  146  2  2   21  110   204 0.224  14.98
 2.04 Intr -  56687  56596   92  0  2    9  115    43 0.274  -1.19
 2.03 Intr -  60043  59872  172  1  1  130   60   155 0.459  16.42
 2.02 Intr -  86038  85944   95  2  2   76   80   190 0.052  16.68
 2.01 Init -  96702  96537  166  0  1   75  119    66 0.373   8.23
 2.00 Prom -  98534  98495   40                              -4.96

 3.04 PlyA -  99850  99845    6                               1.05
 3.03 Term - 100596  99998  599  1  2   82   36   679 0.997  56.79
 3.02 Intr - 104069 103565  505  2  1  134   90   594 0.995  56.75
 3.01 Init - 104514 104434   81  0  0   42   78   112 0.919   4.58
 3.00 Prom - 105546 105507   40                              -5.66

 4.05 PlyA - 106745 106740    6                               1.05
 4.04 Term - 110515 110208  308  2  2   45   37   165 0.148   2.38
 4.03 Intr - 139526 139446   81  0  0  104   71   118 0.214  11.31
 4.02 Intr - 143578 143428  151  1  1   79  -23   214 0.249   9.14
 4.01 Init - 152371 152306   66  1  0   71   77    23 0.147   0.60
 4.00 Prom - 154245 154206   40                              -5.66

 5.00 Prom + 154693 154732   40                              -5.96
 5.01 Init + 157919 158011   93  1  0   86  100   113 0.541  10.87
 5.02 Intr + 159713 159847  135  1  0  112  109    75 0.976  12.76
 5.03 Intr + 161327 161451  125  1  2   94  105   106 0.923  12.28
 5.04 Intr + 163289 163388  100  2  1   35   64    66 0.295  -0.99
 5.05 Intr + 164943 164969   27  2  0   89   61    54 0.338   1.11
 5.06 Term + 165335 166030  696  1  0  -69   46   965 0.316  70.15
 5.07 PlyA + 166070 166075    6                              -0.45

 6.00 Prom + 166832 166871   40                              -8.36
 6.01 Init + 167248 167273   26  0  2   81   57    -9 0.350  -5.54
 6.02 Intr + 167837 167960  124  2  1  127  113   184 0.993  25.39
 6.03 Intr + 168097 168175   79  0  1   64   78    77 0.969   3.42
 6.04 Intr + 168483 168640  158  1  2   99   89    41 0.993   5.03
 6.05 Intr + 169227 169317   91  2  1   70   94    86 0.997   6.97
 6.06 Intr + 169437 169558  122  1  2   97  101   192 0.999  21.61
 6.07 Intr + 169712 169795   84  1  0   62  101    63 0.970   5.02
 6.08 Intr + 170254 170337   84  0  0  113   70    61 0.986   6.82
 6.09 Intr + 170430 170542  113  2  2   84   82   132 0.999  11.38
 6.10 Intr + 170960 171103  144  2  0   74   64   176 0.787  13.20
 6.11 Intr + 171195 171371  177  0  0   73  105   278 0.999  27.03
 6.12 Term + 172131 172194   64  0  1  131   49    50 0.993   2.76
 6.13 PlyA + 176511 176516    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:39797375_40001888|GENSCAN_predicted_peptide_1|130_aa
MLVVTKSLVKLGERPWCQGAALASRCTTHFAAKPCTRPSSSFPRFRCQSREMNRSHIDSS
EEYPCVTSGTGSLTPARAVQGSPQAKGPSRFSAAELLLARTSDDPASSMQQMRTMLQRME
KQHDTRNLCP

>gi568815597r:39797375_40001888|GENSCAN_predicted_CDS_1|393_bp
atgctggttgtcaccaagtcactggtgaaactgggagagcgcccctggtgccagggcgcg
gctctggcctcccgctgcacaacccactttgccgccaagccctgtacccggcccagcagc
tccttcccgcgcttccgctgccagtcccgggaaatgaatagaagccacatagactcttcc
gaggagtacccatgtgtcacttctgggacaggcagcctcactcctgccagggccgtgcag
ggcagtccacaggccaaaggtccaagtagattcagcgctgctgagttgcttctggctagg
accagtgatgacccagcttcaagcatgcagcagatgaggacaatgctccagaggatggag
aagcaacatgatacgaggaatctgtgtccctga

>gi568815597r:39797375_40001888|GENSCAN_predicted_peptide_2|502_aa
MAMSIMVKEASTNSSLQMGLGLVLPTRIPMEPQYGQKAPLNSSHLQNDPLVTLQPVILGA
TGTGKSTLALQLGQRLGGEIVSADSMQVYEGLDIITNKVSAQEQRICRHHMISFVDPLVT
NYTVVDFRNRATALISLGKAAAGFDIFARDKIPIVVGGTNYYIESLLWKVLVNTKPQEMG
TEKVIDRKVELEKEDGLVLHKRLSQVDPEMAAKLHPHDKRKVARSLQVFEETGISHSEFL
HRQHTEEGGGPLGGPLKFSNPCILWLHADQADERLDKRVDDMLAAGLLEELRDFHRRYNQ
KNVSENSQDYQHGIFQSIGFKEFHEYLITEGKCTLETSNQLLKKGIEALKQVTKRYARKQ
NRWVKNRFLSRPGPIVPPVYGLEVSDVSKWEESVLEPALEIVQSFIQGHKPTATPIKMPY
NEAENKRSYHLCDLCDRIIIGDREWAAHIKSKSHLNQLKKRRRLDSDAVNTIESQSVSPD
HNKEPKEKGSPGQNDQELKCSV

>gi568815597r:39797375_40001888|GENSCAN_predicted_CDS_2|1509_bp
atggccatgagcatcatggtgaaagaagcctccactaactcctccttacagatgggactt
gggttggtattgcccacccgaattcctatggagcctcagtacggtcaaaaagctcctctt
aattcctcacatttacaaaatgaccctcttgtgaccctccaacctgtgattctcggggcc
acgggcaccggcaaatccacgctggcgttgcagctaggccagcggctcggcggtgagatc
gtcagcgctgactccatgcaggtctatgaaggcctagacatcatcaccaacaaggtttct
gcccaagagcagagaatctgccggcaccacatgatcagctttgtggatcctcttgtgacc
aattacacagtggtggacttcagaaatagagcaactgctctgatatccttaggaaaggca
gcagctgggtttgatatatttgcccgagacaaaattcctattgttgtgggaggaaccaat
tattacattgaatctctgctctggaaagttcttgtcaataccaagccccaggagatgggc
actgagaaagtgattgaccgaaaagtggagcttgaaaaggaggatggtcttgtacttcac
aaacgcctaagccaggtggacccagaaatggctgccaagctgcatccacatgacaaacgc
aaagtggccaggagcttgcaagtttttgaagaaacaggaatctctcatagtgaatttctc
catcgtcaacatacggaagaaggtggtggtccccttggaggtcctctgaagttctctaac
ccttgcatcctttggcttcatgctgaccaggcagatgagcgcttggataagagggtggat
gacatgcttgctgctgggctcttggaggaactaagagattttcacagacgctataatcag
aagaatgtttcggaaaatagccaggactatcaacatggtatcttccaatcaattggcttc
aaggaatttcacgagtacctgatcactgagggaaaatgcacactggagactagtaaccag
cttctaaagaaaggtattgaggctctgaaacaagtaactaagagatatgcccggaaacaa
aaccgatgggttaaaaaccgttttttgagcagacctggtcccattgtcccccctgtctat
ggcttagaggtatctgatgtctcgaagtgggaagagtctgttcttgaacctgctcttgaa
atcgtgcaaagtttcatccagggccacaagcctacagccactccaataaagatgccatac
aatgaagctgagaacaagagaagttatcacctgtgtgacctctgtgatcgaatcatcatt
ggggatcgcgaatgggcagcgcacataaaatccaaatcccacttgaaccaactgaagaaa
agaagaagattggactcagatgctgtcaacaccatagaaagtcagagtgtttccccagac
cataacaaagaacctaaagagaagggatccccagggcagaatgatcaagagctgaaatgc
agcgtttaa

>gi568815597r:39797375_40001888|GENSCAN_predicted_peptide_3|394_aa
MCVCAGCRAAPSRRGAGPLQVAGGWSEGADMDYDSYQHYFYDYDCGEDFYRSTAPSEDIW
KKFELVPSPPTSPPWGLGPGAGDPAPGIGPPEPWPGGCTGDEAESRGHSKGWGRNYASII
RRDCMWSGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCPLGE
PKTQACSGSESPSDSENEEIDVVTVEKRQSLGIRKPVTITVRADPLDPCMKHFHISIHQQ
QHNYAARFPPESCSQEEASERGPQEEVLERDAAGEKEDEEDEEIVSPPPVESEAAQSCHP
KPVSSDTEDVTKRKNHNFLERKRRNDLRSRFLALRDQVPTLASCSKAPKVVILSKALEYL
QALVGAEKRMATEKRQLRCRQQQLQKRIAYLTGY

>gi568815597r:39797375_40001888|GENSCAN_predicted_CDS_3|1185_bp
atgtgcgtgtgtgctggctgccgggctgccccgagccggcggggagccggtccgctccag
gtggcgggcggctggagcgagggagcggacatggactacgactcgtaccagcactatttc
tacgactatgactgcggggaggatttctaccgctccacggcgcccagcgaggacatctgg
aagaaattcgagctggtgccatcgccccccacgtcgccgccctggggcttgggtcccggc
gcaggggacccggcccccgggattggtcccccggagccgtggcccggagggtgcaccgga
gacgaagcggaatcccggggccactcgaaaggctggggcaggaactacgcctccatcata
cgccgtgactgcatgtggagcggcttctcggcccgggaacggctggagagagctgtgagc
gaccggctcgctcctggcgcgccccgggggaacccgcccaaggcgtccgccgccccggac
tgcactcccagcctcgaagccggcaacccggcgcccgccgccccctgtccgctgggcgaa
cccaagacccaggcctgctccgggtccgagagcccaagcgactcggagaatgaagaaatt
gatgttgtgacagtagagaagaggcagtctctgggtattcggaagccggtcaccatcacg
gtgcgagcagaccccctggatccctgcatgaagcatttccacatctccatccatcagcaa
cagcacaactatgctgcccgttttcctccagaaagctgctcccaagaagaggcttcagag
aggggtccccaagaagaggttctggagagagatgctgcaggggaaaaggaagatgaggag
gatgaagagattgtgagtcccccacctgtagaaagtgaggctgcccagtcctgccacccc
aaacctgtcagttctgatactgaggatgtgaccaagaggaagaatcacaacttcctggag
cgcaagaggcggaatgacctgcgttcgcgattcttggcgctgagggaccaggtgcccacc
ctggccagctgctccaaggcccccaaagtagtgatcctaagcaaggccttggaatacttg
caagccctggtgggggctgagaagaggatggctacagagaaaagacagctccgatgccgg
cagcagcagttgcagaaaagaattgcatacctcactggctactaa

>gi568815597r:39797375_40001888|GENSCAN_predicted_peptide_4|201_aa
MPITQVMLSAVVKGASSTLAPHTFPRSGSSPEDKDSSTFSERLTAKKTLRMTECEKLRNA
SLGTDSYAIRGQREMVKVKVVVDFLKLRKDSPGHQEKAVASQTINQRVYQRKFQKHKVSK
LLLPKYLFSKQLLEDMLHQSEEVKRERGRNKLQKTGDATQERSRGNFQDDGKGKSQDDNC
EAGQEINKFRLEQEDKGLQPR

>gi568815597r:39797375_40001888|GENSCAN_predicted_CDS_4|606_bp
atgcccattacccaagtcatgctaagtgctgtggttaaaggagcctcttctacactggca
ccccatactttcccacggtcaggatcctccccagaagacaaagacagctctactttttca
gagagactgactgccaagaagacgttaagaatgacagagtgtgagaagctgcgcaacgcc
agccttggcacagacagctacgccatccgaggccaaagagagatggtcaaagtgaaagtg
gtagtagacttcctcaagctgcgtaaggactcccctggccaccaggaaaaagcggtagcc
agccaaaccatcaaccaaagggtataccaaagaaaatttcagaaacacaaagtctcaaaa
cttttacttcccaagtaccttttctcaaagcagctgctggaggatatgctccaccaaagt
gaggaagtaaaacgagaaagaggaagaaacaagctccagaaaacaggggatgcgacacag
gagagaagcagagggaatttccaagatgatggtaaagggaagtcacaggatgacaattgt
gaagcaggccaagagatcaataagttcagactagaacaggaagacaaaggactccaacca
agatga

>gi568815597r:39797375_40001888|GENSCAN_predicted_peptide_5|391_aa
MAKGEGAESGSAAGLLPTSILQSTERPAQVKKEPKKKKQQLSVCNKLCYALGGAPYQVTG
CALGFFLQIYLLDVAQVGPFSASIILFVGRAWDAITDPLVGLCISKSPWTCLGRLMPCSS
CSAAYEQRMECLTKADEELLFPEETESREVEAFGMDATFSAEDKEWMPVTKLGRLVKDMK
IKSLQEIYLFSLPIKGSEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYN
GHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKISKPHTVPCKVTGRCGSVLVR
LIPAPRSTGIVSTPVPKKLLMMAGIDDCYTSARGCTATLGSFAKGTFDAISKTYSYLTPD
LWKETVFTKSPDQEFTDHLIKTHQAPAVATT

>gi568815597r:39797375_40001888|GENSCAN_predicted_CDS_5|1176_bp
atggccaaaggagaaggcgccgagagcggctccgcggcggggctgctacccaccagcatc
ctccaaagcactgaacgcccggcccaggtgaagaaagaaccgaaaaagaagaaacaacag
ttgtctgtttgcaacaagctttgctatgcacttgggggagccccctaccaggtgacgggc
tgtgccctgggtttcttccttcagatctacctattggatgtggctcaggtgggccctttc
tctgcctccatcatcctgtttgtgggccgagcctgggatgccatcacagaccccctggtg
ggcctctgcatcagcaaatccccctggacctgcctgggtcgccttatgccctgcagcagc
tgctcagctgcttatgagcagaggatggagtgtttgacaaaggctgatgaggagctcttg
ttccctgaggagacagagtcaagagaggtggaggcctttggcatggatgccaccttctca
gccgaggataaggagtggatgcctgtcaccaagctgggccgcttggtgaaggacatgaag
atcaagtccctgcaggagatctatctcttctctctgcccattaagggatctgagatcatt
gactttttcctgggggcctctctcaaggatgaggttttgaagattatgccagtgcagaag
cagacccgtgccggccagcgcaccaggttcaaggcgtttgttgctatcggagactacaat
ggccatgtcggtctgggtgttaagtgctccaaggaggtggccaccgccatccgtggggcc
atcatcctggccaagctctccattgtccccgtgcgcagaggctactgggggaacaagatc
agcaagccccacaccgtcccttgcaaggtgacaggccgctgcggctctgtgctggtgcgt
ctcatccctgcacccaggagcactggcatcgtctccacacctgtgcccaagaagctgctc
atgatggctggtatcgatgactgctacacctcagcccggggctgcactgccaccctgggc
agctttgccaagggcacctttgatgccatctctaagacctacagctacctgacccccgac
ctctggaaggagactgtattcaccaagtctcccgatcaggaattcactgaccacctcatc
aagacccaccaggctccagctgtggctacaacatag

>gi568815597r:39797375_40001888|GENSCAN_predicted_peptide_6|421_aa
MPASLCVNGIIFSTPLAVIAYFLIWFVPDFPHGQTYWYLLFYCLFETMVTCFHVPYSALT
MFISTEQTERDSATAYRMTVEVLGTVLGTAIQGQIVGQADTPCFQDLNSSTVASQSANHT
HGTTSHRETQKAYLLAAGVIVCIYIICAVILILGVREQREPYEAQQSEPIAYFRGLRLVM
SHGPYIKLITGFLFTSLAFMLVEGNFVLFCTYTLGFRNEFQNLLLAIMLSATLTIPIWQW
FLTRFGKKTAVYVGISSAVPFLILVALMESNLIITYAVAVAAGISVAAAFLLPWSMLPDV
IDDFHLKQPHFHGTEPIFFSFYVFFTKFASGVSLGISTLSLDFAGYQTRGCSQPERVKFT
LNMLVTMAPIVLILLGLLLFKMYPIDEERRRQNKKALQALRDEASSSGCSETDSTELASI
L

>gi568815597r:39797375_40001888|GENSCAN_predicted_CDS_6|1266_bp
atgccagcttccctgtgtgtgaatgggatcatcttctccacgcccctggccgtcattgcc
tacttcctcatctggttcgtgcccgacttcccacacggccagacctattggtacctgctt
ttctattgcctctttgaaacaatggtcacgtgtttccatgttccctactcggctctcacc
atgttcatcagcaccgagcagactgagcgggattctgccaccgcctatcggatgactgtg
gaagtgctgggcacagtgctgggcacggcgatccagggacaaatcgtgggccaagcagac
acgccttgtttccaggacctcaatagctctacagtagcttcacaaagtgccaaccataca
catggcaccacctcacacagggaaacgcaaaaggcatacctgctggcagcgggggtcatt
gtctgtatctatataatctgtgctgtcatcctgatcctgggcgtgcgggagcagagagaa
ccctatgaagcccagcagtctgagccaatcgcctacttccggggcctacggctggtcatg
agccacggcccatacatcaaacttattactggcttcctcttcacctccttggctttcatg
ctggtggaggggaactttgtcttgttttgcacctacaccttgggcttccgcaatgaattc
cagaatctactcctggccatcatgctctcggccactttaaccattcccatctggcagtgg
ttcttgacccggtttggcaagaagacagctgtatatgttgggatctcatcagcagtgcca
tttctcatcttggtggccctcatggagagtaacctcatcattacatatgcggtagctgtg
gcagctggcatcagtgtggcagctgccttcttactaccctggtccatgctgcctgatgtc
attgacgacttccatctgaagcagccccacttccatggaaccgagcccatcttcttctcc
ttctatgtcttcttcaccaagtttgcctctggagtgtcactgggcatttctaccctcagt
ctggactttgcagggtaccagacccgtggctgctcgcagccggaacgtgtcaagtttaca
ctgaacatgctcgtgaccatggctcccatagttctcatcctgctgggcctgctgctcttc
aaaatgtaccccattgatgaggagaggcggcggcagaataagaaggccctgcaggcactg
agggacgaggccagcagctctggctgctcagaaacagactccacagagctggctagcatc
ctctag