GENSCAN 1.0	Date run:  5-Nov-116	Time: 14:16:15

Sequence gi568815579f:47908668_48122324 : 213657 bp : 45.85% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   3381   3572  192  0  0   89   43   112 0.638   5.41
 1.02 Intr +   8754   8945  192  0  0   81   53   116 0.316   6.01
 1.03 Intr +  14105  14296  192  2  0   81   53    92 0.540   3.61
 1.04 Intr +  19149  19340  192  0  0   89   43   110 0.726   5.21
 1.05 Intr +  24507  24698  192  0  0   81   53    92 0.059   3.61
 1.06 Intr +  29862  30053  192  0  0   89   43   112 0.363   5.41
 1.07 Intr +  35248  35439  192  1  0   81   53    92 0.125   3.61
 1.08 Intr +  40619  40810  192  2  0   89   43   112 0.494   5.41
 1.09 Intr +  46007  46198  192  2  0   89   43   112 0.357   5.41
 1.10 Intr +  46891  47000  110  1  2   99   82    31 0.565   3.53
 1.11 Term +  48677  48717   41  0  2   91   43    55 0.544  -1.35
 1.12 PlyA +  48746  48751    6                               1.05

 2.05 PlyA -  49970  49965    6                               1.05
 2.04 Term -  68187  68045  143  1  2  132   45    45 0.980   2.69
 2.03 Intr -  68837  68706  132  0  0   25  113    75 0.942   4.32
 2.02 Intr -  70932  70903   30  1  0   89  111    -4 0.208   0.10
 2.01 Init -  82601  82505   97  2  1   86  100   135 0.550  13.00
 2.00 Prom -  88378  88339   40                              -4.56

 3.00 Prom +  98445  98484   40                              -5.96
 3.01 Init + 102859 103108  250  0  1   66   50   429 0.012  34.53
 3.02 Intr + 105504 105641  138  1  0  126  113   105 0.968  17.24
 3.03 Intr + 107226 107372  147  1  0   77   89    91 0.973   8.31
 3.04 Intr + 111052 111232  181  2  1   96   55    88 0.386   5.23
 3.05 Intr + 117164 117267  104  2  2   93   81    60 0.081   5.62
 3.06 Term + 117608 117651   44  0  2   85   48    -1 0.020  -7.08
 3.07 PlyA + 119281 119286    6                               1.05

 4.23 PlyA - 119958 119953    6                               1.05
 4.22 Term - 121915 121890   26  2  2  103   55    17 0.391  -1.71
 4.21 Intr - 125695 125548  148  1  1   76   56   169 0.769  12.31
 4.20 Intr - 130650 130541  110  1  2   78  105   183 0.997  19.00
 4.19 Intr - 132081 131938  144  1  0   68   84   152 0.977  13.05
 4.18 Intr - 132936 132906   31  0  1  101   87    21 0.859   1.00
 4.17 Intr - 135249 135193   57  0  0   62   76    67 0.256   1.98
 4.16 Intr - 139586 139280  307  1  1   98   63   285 0.317  23.45
 4.15 Intr - 144480 144330  151  1  1   74   77   159 0.714  12.62
 4.14 Intr - 146382 146211  172  0  1   85   92   194 0.974  19.02
 4.13 Intr - 150889 150848   42  1  0   94   92     9 0.461   0.34
 4.12 Intr - 153485 153331  155  0  2   90   74   231 0.536  21.69
 4.11 Intr - 159219 159124   96  1  0  108   93    29 0.961   5.38
 4.10 Intr - 166207 166067  141  2  0   41   98    64 0.183   3.02
 4.09 Intr - 169157 169104   54  0  0  112  121    -1 0.091   4.55
 4.08 Intr - 180045 180019   27  1  0  115  121    11 0.041   5.19
 4.07 Intr - 186937 186797  141  2  0  114   60    23 0.157   2.42
 4.06 Intr - 189592 189472  121  1  1   70  115    95 0.998  10.47
 4.05 Intr - 191193 191004  190  2  1  148  100   149 0.999  21.69
 4.04 Intr - 196057 195921  137  1  2   76   99    90 0.994   8.27
 4.03 Intr - 196777 196666  112  0  1   31  107   121 0.973   8.68
 4.02 Intr - 202011 201813  199  1  1   68    0   257 0.118  13.31
 4.01 Init - 203816 203672  145  2  1   86   96    33 0.822   2.73
 4.00 Prom - 205799 205760   40                              -9.65

 5.06 PlyA - 206800 206795    6                               1.05
 5.05 Term - 207065 206982   84  2  0  154   46    94 0.999   9.45
 5.04 Intr - 207298 207206   93  1  0   96   94   147 0.992  16.26
 5.03 Intr - 209114 208971  144  2  0  120  105    61 0.949  11.48
 5.02 Intr - 210523 210470   54  1  0  133  105    96 0.999  14.98
 5.01 Intr - 212655 212503  153  0  0  113   29   345 0.991  31.37

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl - 116913 116788  126  0  0  103   37   150 0.803   4.28
S.002 Init - 197862 197855    8  0  2   85  115     0 0.809   2.92
S.003 Term - 202011 201737  275  1  2   68   42   233 0.815  12.33


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815579f:47908668_48122324|GENSCAN_predicted_peptide_1|626_aa
XHTGLLTVPVAAGMCPHRASVLAVPTARTPSCTICTVQYGRLWPHMATEQLNMAGPNQDF
QDVVCHTGLLTVPVAAGMCPHWASVLAVPTARTPSCTICTVQYGRLWPHMATEQLNMAGP
NQDFQDVVCHTGLLTVPVAAGMCPHWASVLAVPTARTPSCTICTVQYGRLWPHMATEQLN
MAGPNQHFQDVVCHTGLLTVPVEAGMCPHRASVLAVPTARTPSCTICTVQYGRLWPHMAT
EQLNMAGPNQDFQDVVCHTGLLTVPVAAGMCPHWASVLAVPTARTPSCTICTVQYGRLWP
HMATEQLNMAGPNQHFQDVVCHTGLLTVPVAAGMCPHRASVLAVPTARTPSCTICTVQYG
RLWPHMATEQLNMAGPNQDFQDVVCHTGLLTVPVAAGMCPHWASVLAVPTARTPSCTICT
VQYGRLWPHMATEQLNMAGPNQHFQDVVCHTGLLTVPVAAGMCPHRASVLAVPTARTPSC
TICTVQYGRLWPHMATEQLNMAGPNQDFQDVVCHTGLLTVPVAAGMCPHRASVLAVPTAR
TPSCTICTVQYGRLWPHMATEQLNMAGPNQDFQDVVWGRHGTQGPHWPWGLGDVRGEPLV
IGSLTLRKIKGPKVSFSTPYLDKDKK

>gi568815579f:47908668_48122324|GENSCAN_predicted_CDS_1|1881_bp
nnccacacggggctcctcactgttcccgtagcagcaggcatgtgcccccacagggcctct
gtactggctgttcccactgcccgaacaccctcatgcaccatctgcactgtccaatacggc
cgcctctggccacacatggctactgagcagttgaacatggctggtccaaaccaagatttc
caagacgtcgtgtgccacacggggctcctcactgttcccgtagcagcaggcatgtgcccc
cactgggcctctgtactggctgttcccactgcccgaacaccctcatgcaccatctgcact
gtccaatacggccgcctctggccacacatggctactgagcagttgaacatggctggtcca
aaccaagatttccaagacgtcgtatgccacacggggctcctcactgttcccgtagcagca
ggcatgtgcccccactgggcctctgtactggctgttcccactgcccgaacaccctcatgc
accatctgcactgtccaatacggccgcctctggccacacatggctactgagcagttgaac
atggctggtccaaaccaacatttccaagacgtcgtatgccacacggggctcctcactgtt
cccgtagaagcaggcatgtgcccccacagggcctctgtactggctgttcccactgcccga
acaccctcatgcaccatctgcactgtccaatacggccgcctctggccacacatggctact
gagcagttgaacatggctggtccaaaccaagatttccaagacgtcgtgtgccacacgggg
ctcctcactgttcccgtagcagcaggcatgtgcccccactgggcctctgtactggctgtt
cccactgcccgaacaccctcatgcaccatctgcactgtccaatacggccgcctctggcca
cacatggctactgagcagttgaacatggctggtccaaaccaacatttccaagacgtcgta
tgccacacggggctcctcactgttcccgtagcagcaggcatgtgcccccacagggcctct
gtactggctgttcccactgcccgaacaccctcatgcaccatctgcactgtccaatacggc
cgcctctggccacacatggctactgagcagttgaacatggctggtccaaaccaagatttc
caagacgtcgtgtgccacacggggctcctcactgttcccgtagcagcaggcatgtgcccc
cactgggcctctgtactggctgttcccactgcccgaacaccctcatgcaccatctgcact
gtccaatacggccgcctctggccacacatggctactgagcagttgaacatggctggtcca
aaccaacatttccaagacgtcgtatgccacacggggctcctcactgttcccgtagcagca
ggcatgtgcccccacagggcctctgtactggctgttcccactgcccgaacaccctcatgc
accatctgcactgtccaatacggccgcctctggccacacatggctactgagcagttgaac
atggctggtccaaaccaagatttccaagacgtcgtgtgccacacggggctcctcactgtt
cccgtagcagcaggcatgtgcccccacagggcctctgtactggctgttcccactgcccga
acaccctcatgcaccatctgcactgtccaatacggccgcctctggccacacatggctact
gagcagttgaacatggctggtccaaaccaagatttccaagacgtcgtgtgggggcgccat
ggaacgcagggccctcactggccctggggactgggtgacgtcaggggtgagcctctggtg
attggctccctcaccctgcgtaagatcaaagggcctaaagttagcttttctacaccctac
ctggataaggataagaaatag

>gi568815579f:47908668_48122324|GENSCAN_predicted_peptide_2|133_aa
MARHMGLLLVWVCLIRGVVGGVVGAVFNVLEEETITHFPEVTDGECVFPFHYKNGTYYDC
IKSKARHKWCSLNKTYEGYWKFCSAEDFANCVFPFWYRRLIYWECTDDGEAFGKKWCSLT
KNFNKDRIWKYCE

>gi568815579f:47908668_48122324|GENSCAN_predicted_CDS_2|402_bp
atggcccggcacatggggctcctgctggtttgggtctgcctgattcgcggtgtggtcggt
ggtgtggtcggcgctgtatttaacgttctggaagaagaaactataactcattttccagaa
gttacagatggggagtgtgtctttccattccactataaaaatggaacatattatgactgc
atcaagtccaaggcaagacacaagtggtgctcgttaaacaagacctacgaaggatactgg
aagttttgcagtgcagaagattttgcaaactgtgtatttcccttctggtacagacgcttg
atctactgggagtgtactgatgatggggaagcatttgggaaaaaatggtgttcactgacc
aagaattttaacaaggaccgaatttggaaatactgtgaatga

>gi568815579f:47908668_48122324|GENSCAN_predicted_peptide_3|287_aa
MTDNDDNDDDDNDDHHHMIMTIMRWIMMTMMMTTMMMIIILMTMTIMRLMMVTMTDDDDH
DNDDEHYDDANDNSVENDDDDSDGMHEECVFPFTYKGSVYFTCTHIHSLSPWCATRAVYN
GQWKYCQSEDYPRCIFPFIYRGKAYNSCISQGSFLGSLWCSVTSVFDEKQQWKFCETNEY
GGNSLRKPCIFPSIYRNNVVSDCMEDESNKLWCPTTENMDKDGKWSFCADTSNLGMGVGL
LLPSLIVRGIAPVMEIDVGFLDPPSRKDLLPSSKEEPWGTQPETAHL

>gi568815579f:47908668_48122324|GENSCAN_predicted_CDS_3|864_bp
atgactgataatgatgacaatgatgatgatgacaatgatgatcatcatcacatgataatg
acaataatgaggtggattatgatgacaatgatgatgacaacgatgatgatgatcatcatc
ctgatgacaatgacaataatgagactgatgatggtgacaatgactgatgatgatgatcat
gacaatgatgatgagcattatgatgatgccaatgacaatagcgtggagaatgatgatgat
gacagtgatgggatgcatgaggaatgtgtctttcctttcacctacaagggatctgtttac
ttcacttgcacccatattcatagcttatccccttggtgtgccaccagagccgtgtacaac
ggccagtggaagtactgccagagtgaagattacccacgctgtatcttccctttcatctat
cgaggaaaggcttataacagctgcatctcccagggcagcttcttaggcagtctgtggtgc
tcagtcacctctgtcttcgatgagaaacagcagtggaaattctgtgaaacgaatgagtat
gggggaaattctctcaggaagccctgcatcttcccctccatctacagaaataatgtggtc
tctgattgcatggaggatgaaagcaacaagctctggtgcccaaccacagagaacatggat
aaggatggaaagtggagtttctgtgccgacaccagtaatctggggatgggggttggtctc
ctcctcccttcactcattgtccgtggaattgcccctgtgatggagatagacgtgggcttc
ctagatcccccttcaagaaaggacttgctgcccagctccaaggaggagccctggggaacc
caacctgagacagctcatctttaa

>gi568815579f:47908668_48122324|GENSCAN_predicted_peptide_4|901_aa
MVPLGLALPPCTSAGPQEHICHTRPPCPSAEASQGHPHSSVTLMMAPPGGKGKQEDHRSF
GTEDPRSLHPRRFRLKELSSDYTAKRREPKPPHRIPEHKLHRACAHAPDPGSGKPSEVSI
IPGLQKEEKAAVERRRLHVLKALKKLRIEADEAPVVAVLGSGGGLRAHIACLGVLSEMKE
QGLLDAVTYLAGVSGSTWAISSLYTNDGDMEALEADLKHRFTRQEWDLAKSLQKTIQAAR
SENYSLTDFWAYMVISKQTRELPESHLSNMKKPVEEGTLPYPIFAAIDNDLQPSWQEARA
PETWFEFTPHHAGFSALGAFVSITHFGSKFKKGRLVRTHPERDLTFLRDQLRNLTLKARL
LRLQESSQGEHPPPEDEGGEPEHTWLTEMLENWTRTSLEKQEQPHEDPERKGTMCSVISV
INSSLSNLMDFVKKTGICASKWEWGTTHNFLYKHGGIRDKIMSSRKHLHLVDAGLAINTP
FPLVLPPTREVHLILSFDFSAGDPFESHWQPIGGCPPTLWTIRATTDYCRRHKIPFPQVE
EAELDLWSKAPASCYILKGETGPVVMHFPLFNIDACGGDIEAWSDTYDTFKLADTYTLDV
VVLLLALAKKNVRENKKKILRELMNVAGHTLHGLEFTLAVLTGPITSDQLDCDFDSVIQK
KASKELKVVKFVLQVPREILELEHECLTIRSIMSNVQMARMNVIVQTNAFHCSFMTALLA
SSSAQVSSVEFPMGPACIFLRKGIAEKQRERPLGQDEIEELREAFLEFDKDRDGFISCKD
LGNLMRTMGYMPTEMELIELGQQIRMNLGGRVDFDDFVELMTPKLLAETAGMIGVQEMRD
AFKEFDTNGDGEITLVELQQAMQRLLGERLTPREISEVVREADVNGDGTVDFEEFVKMMS
R

>gi568815579f:47908668_48122324|GENSCAN_predicted_CDS_4|2706_bp
atggttcctttgggcttggctcttcctccctgcaccagtgcagggccccaggaacacatc
tgccacacacggccgccatgtccctctgctgaagctagtcagggtcatcctcactcctca
gtgaccctcatgatggctccaccagggggaaaaggaaagcaggaggaccacagaagcttt
ggcaccgaggatccccgcagtcttcacccgcggagattccggctgaaggagctgtccagc
gactacaccgctaagcgcagggagcccaagcctccgcaccggattccggagcacaagctc
caccgcgcatgcgcacacgccccagacccaggctcaggcaagccctctgaagtttccata
attcctgggctccagaaagaagaaaaggcggccgtggagagacgaagacttcatgtgctg
aaagctctgaagaagctaaggattgaggctgatgaggccccagttgttgctgtgctgggc
tcaggcggaggactgcgggctcacattgcctgccttggggtcctgagtgagatgaaagaa
cagggcctgttggatgccgtcacgtacctcgcaggggtctctggatccacttgggcaata
tcttctctctacaccaatgatggtgacatggaagctctcgaggctgacctgaaacatcga
tttacccgacaggagtgggacttggctaagagcctacagaaaaccatccaagcagcgagg
tctgagaattactctctgaccgacttctgggcctacatggttatctctaagcaaaccaga
gaactgccggagtctcatttgtccaatatgaagaagcccgtggaagaagggacactaccc
tacccaatatttgcagccattgacaatgacctgcaaccttcctggcaggaggcaagagca
ccagagacctggttcgagttcacccctcaccacgctggcttctctgcactgggggccttt
gtttccataacccacttcggaagcaaattcaagaagggaagactggtcagaactcaccct
gagagagacctgactttcctgagagaccagttaaggaatctgaccctgaaagcccgatta
ctgaggctgcaagaaagttcacaaggggaacatcctcccccagaagatgaaggcggtgag
cctgaacacacctggctgactgagatgctcgagaattggaccaggacctccctggaaaag
caggagcagccccatgaggaccccgaaaggaaaggtaccatgtgtagtgtgataagtgtc
atcaacagctcactcagtaacttgatggattttgtgaagaaaacaggcatttgcgcttca
aagtgggaatgggggaccactcacaacttcctgtacaaacacggtggcatccgggacaag
ataatgagcagccggaagcacctccacctggtggatgctggtttagccatcaacactccc
ttcccactcgtgctgcccccgacgcgggaggttcacctcatcctctccttcgacttcagt
gccggagatcctttcgagtcacactggcagccaattggagggtgtccgcccacactgtgg
accatccgggctaccactgactactgccgccgccacaagatcccctttccccaagtagaa
gaggctgagctggatttgtggtccaaggcccccgccagctgctacatcctgaaaggagaa
actggaccagtggtgatgcattttcccctgttcaacatagatgcctgtggaggtgatatt
gaggcatggagtgacacatacgacacattcaagcttgctgacacctacactctagatgtg
gtggtgctactcttggcattagccaagaagaatgtcagggaaaacaagaagaagatcctt
agagagttgatgaacgtggccggccacacgcttcatggccttgagttcaccttggctgtc
ctaacagggccaatcaccagtgaccagctagactgtgattttgatagcgtcattcagaag
aaggcgtccaaggagctgaaggtggtgaaatttgtcctgcaggtccctcgggagatcctg
gagctggagcatgagtgtctgacaatcagaagcatcatgtccaatgtccagatggccaga
atgaatgtgatagttcagaccaatgccttccactgctcctttatgactgcacttctagcc
agtagctctgcacaagttagctctgtagaattccccatgggccccgcctgcatcttcttg
aggaaaggcattgctgagaaacagcgggaaagaccactgggacaagatgagattgaagag
ctgcgggaagcatttcttgagttcgataaggaccgagatgggttcatctcttgtaaggat
ctggggaatctcatgaggacgatgggttacatgcccacggagatggaactgattgagctc
ggccagcaaatccgcatgaacctgggtggccgtgtagactttgatgactttgtggagctg
atgacccccaaattgcttgcagaaacagctgggatgatcggtgtccaggagatgcgggat
gccttcaaggagtttgacacgaatggagatggggagatcaccctggtggagctacagcag
gccatgcagagactcctgggggagcggctcaccccccgggagatctctgaggttgtccgg
gaggctgatgttaatggagacggcacagttgactttgaagagtttgtgaagatgatgtct
cgctga

>gi568815579f:47908668_48122324|GENSCAN_predicted_peptide_5|175_aa
LKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASYDEDSEELQAICKLGTGFSDEE
LEEHHQSLKALVLPSPRPYVRIDGAVIPDHWLDPSAVWEVKCADLSLSPIYPAARGLVDS
DKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQSQIQNQQGEDSGSDPEDTY

>gi568815579f:47908668_48122324|GENSCAN_predicted_CDS_5|528_bp
ctgaagaaggactaccttgatggcgtgggtgacaccctggacctggtggtgatcggcgcc
tacctgggccgggggaagcgggccggccggtacgggggcttcctgctggcctcctacgac
gaggacagtgaggagctgcaggccatatgcaagcttggaactggcttcagtgatgaggag
ctggaggagcatcaccagagcctcaaggcgctggtgctgcccagcccacgcccttacgtg
cggatagatggcgctgtgattcccgaccactggctggaccccagcgctgtgtgggaggtg
aagtgcgctgacctctccctctctcccatctaccctgctgcgcggggcctggtggatagt
gacaagggcatctcccttcgcttccctcggtttattcgagtccgtgaagacaagcagccg
gagcaggccaccaccagtgctcaggtggcctgtttgtaccggaagcaaagtcagattcag
aaccaacaaggcgaggactcaggctctgaccctgaagatacctactaa