Result of FASTA (omim) for pF1KB6829
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6829, 166 aa
  1>>>pF1KB6829 166 - 166 aa - 166 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9911+/-0.000329; mu= 13.9382+/- 0.021
 mean_var=59.0920+/-11.607, 0's: 0 Z-trim(115.7): 271  B-trim: 0 in 0/50
 Lambda= 0.166844
 statistics sampled from 26087 (26372) to 26087 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.309), width:  16
 Scan time:  4.540

The best scores are:                                      opt bits E(85289)
NP_002900 (OMIM: 167770) lithostathine-1-alpha pre ( 166) 1165 288.2 4.1e-78
NP_006498 (OMIM: 167771) lithostathine-1-beta prec ( 166) 1006 249.9 1.4e-66
NP_002571 (OMIM: 167805) regenerating islet-derive ( 175)  588 149.3 2.8e-36
NP_620355 (OMIM: 167805) regenerating islet-derive ( 175)  588 149.3 2.8e-36
NP_620354 (OMIM: 167805) regenerating islet-derive ( 175)  588 149.3 2.8e-36
NP_001008388 (OMIM: 609933) regenerating islet-der ( 175)  582 147.9 7.5e-36
NP_940850 (OMIM: 609933) regenerating islet-derive ( 175)  582 147.9 7.5e-36
XP_005264192 (OMIM: 609933) PREDICTED: regeneratin ( 175)  582 147.9 7.5e-36
NP_001152824 (OMIM: 609846) regenerating islet-der ( 158)  317 84.1 1.1e-16
NP_114433 (OMIM: 609846) regenerating islet-derive ( 158)  317 84.1 1.1e-16
XP_016882280 (OMIM: 616838) PREDICTED: C-type lect ( 243)  268 72.4 5.6e-13
XP_016882279 (OMIM: 616838) PREDICTED: C-type lect ( 293)  268 72.4 6.5e-13
XP_016882274 (OMIM: 616838) PREDICTED: C-type lect ( 310)  268 72.4 6.9e-13
XP_016882278 (OMIM: 616838) PREDICTED: C-type lect ( 310)  268 72.4 6.9e-13
XP_016882275 (OMIM: 616838) PREDICTED: C-type lect ( 310)  268 72.4 6.9e-13
XP_016882277 (OMIM: 616838) PREDICTED: C-type lect ( 310)  268 72.4 6.9e-13
XP_016882276 (OMIM: 616838) PREDICTED: C-type lect ( 310)  268 72.4 6.9e-13
NP_001191047 (OMIM: 616838) C-type lectin domain f ( 378)  268 72.5 8.1e-13
XP_011524043 (OMIM: 607621) PREDICTED: collectin-1 ( 725)  264 71.7 2.7e-12
NP_569057 (OMIM: 607621) collectin-12 [Homo sapien ( 742)  264 71.7 2.8e-12
NP_001126 (OMIM: 155760,165800,608361,612813) aggr (2431)  264 72.0 7.4e-12
XP_011519616 (OMIM: 155760,165800,608361,612813) P (2492)  264 72.0 7.6e-12
XP_016877476 (OMIM: 155760,165800,608361,612813) P (2515)  264 72.0 7.6e-12
XP_011519615 (OMIM: 155760,165800,608361,612813) P (2530)  264 72.0 7.7e-12
NP_037359 (OMIM: 155760,165800,608361,612813) aggr (2530)  264 72.0 7.7e-12
XP_016877474 (OMIM: 155760,165800,608361,612813) P (2553)  264 72.0 7.7e-12
XP_016877475 (OMIM: 155760,165800,608361,612813) P (2553)  264 72.0 7.7e-12
XP_006720482 (OMIM: 155760,165800,608361,612813) P (2568)  264 72.0 7.8e-12
NP_001193948 (OMIM: 151445) low affinity immunoglo ( 320)  252 68.6   1e-11
NP_001993 (OMIM: 151445) low affinity immunoglobul ( 321)  252 68.6   1e-11
NP_001207429 (OMIM: 151445) low affinity immunoglo ( 321)  252 68.6   1e-11
XP_005272519 (OMIM: 151445) PREDICTED: low affinit ( 321)  252 68.6   1e-11
XP_011523845 (OMIM: 612264) PREDICTED: C-type mann (1156)  258 70.3 1.1e-11
NP_006030 (OMIM: 612264) C-type mannose receptor 2 (1479)  258 70.4 1.3e-11
NP_004377 (OMIM: 600826) neurocan core protein pre (1321)  253 69.2 2.8e-11
NP_001304928 (OMIM: 613579) C-type lectin domain f ( 179)  230 63.2 2.5e-10
NP_001007034 (OMIM: 613579) C-type lectin domain f ( 209)  230 63.2 2.8e-10
NP_002429 (OMIM: 153618) macrophage mannose recept (1456)  239 65.8 3.1e-10
NP_001119808 (OMIM: 118661,143200) versican core p ( 655)  234 64.4 3.7e-10
XP_006721587 (OMIM: 108361) PREDICTED: asialoglyco ( 248)  229 63.0 3.8e-10
NP_001184145 (OMIM: 108360) asialoglycoprotein rec ( 252)  229 63.0 3.9e-10
NP_550435 (OMIM: 108361) asialoglycoprotein recept ( 287)  229 63.0 4.3e-10
XP_006721589 (OMIM: 108361) PREDICTED: asialoglyco ( 287)  229 63.0 4.3e-10
XP_005256705 (OMIM: 108361) PREDICTED: asialoglyco ( 287)  229 63.0 4.3e-10
XP_011522163 (OMIM: 108360) PREDICTED: asialoglyco ( 291)  229 63.0 4.4e-10
NP_001662 (OMIM: 108360) asialoglycoprotein recept ( 291)  229 63.0 4.4e-10
NP_550436 (OMIM: 108361) asialoglycoprotein recept ( 292)  229 63.0 4.4e-10
XP_016880140 (OMIM: 108361) PREDICTED: asialoglyco ( 292)  229 63.0 4.4e-10
XP_011522167 (OMIM: 108361) PREDICTED: asialoglyco ( 299)  229 63.0 4.5e-10
XP_011522165 (OMIM: 108361) PREDICTED: asialoglyco ( 299)  229 63.0 4.5e-10


>>NP_002900 (OMIM: 167770) lithostathine-1-alpha precurs  (166 aa)
 initn: 1165 init1: 1165 opt: 1165  Z-score: 1523.3  bits: 288.2 E(85289): 4.1e-78
Smith-Waterman score: 1165; 100.0% identity (100.0% similar) in 166 aa overlap (1-166:1-166)

               10        20        30        40        50        60
pF1KB6 MAQTSSYFMLISCLMFLSQSQGQEAQTELPQARISCPEGTNAYRSYCYYFNEDRETWVDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MAQTSSYFMLISCLMFLSQSQGQEAQTELPQARISCPEGTNAYRSYCYYFNEDRETWVDA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DLYCQNMNSGNLVSVLTQAEGAFVASLIKESGTDDFNVWIGLHDPKKNRRWHWSSGSLVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DLYCQNMNSGNLVSVLTQAEGAFVASLIKESGTDDFNVWIGLHDPKKNRRWHWSSGSLVS
               70        80        90       100       110       120

              130       140       150       160      
pF1KB6 YKSWGIGAPSSVNPGYCVSLTSSTGFQKWKDVPCEDKFSFVCKFKN
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_002 YKSWGIGAPSSVNPGYCVSLTSSTGFQKWKDVPCEDKFSFVCKFKN
              130       140       150       160      

>>NP_006498 (OMIM: 167771) lithostathine-1-beta precurso  (166 aa)
 initn: 1006 init1: 1006 opt: 1006  Z-score: 1316.5  bits: 249.9 E(85289): 1.4e-66
Smith-Waterman score: 1006; 86.7% identity (92.8% similar) in 166 aa overlap (1-166:1-166)

               10        20        30        40        50        60
pF1KB6 MAQTSSYFMLISCLMFLSQSQGQEAQTELPQARISCPEGTNAYRSYCYYFNEDRETWVDA
       ::::.:.::::: ::::: :::::.:::::. ::::::::::::::::::::: ::::::
NP_006 MAQTNSFFMLISSLMFLSLSQGQESQTELPNPRISCPEGTNAYRSYCYYFNEDPETWVDA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DLYCQNMNSGNLVSVLTQAEGAFVASLIKESGTDDFNVWIGLHDPKKNRRWHWSSGSLVS
       :::::::::::::::::::::::::::::::.::: ::::::::::::::::::::::::
NP_006 DLYCQNMNSGNLVSVLTQAEGAFVASLIKESSTDDSNVWIGLHDPKKNRRWHWSSGSLVS
               70        80        90       100       110       120

              130       140       150       160      
pF1KB6 YKSWGIGAPSSVNPGYCVSLTSSTGFQKWKDVPCEDKFSFVCKFKN
       ::::  :.:::.: :::.:::: .::.::::  :: ::::::::::
NP_006 YKSWDTGSPSSANAGYCASLTSCSGFKKWKDESCEKKFSFVCKFKN
              130       140       150       160      

>>NP_002571 (OMIM: 167805) regenerating islet-derived pr  (175 aa)
 initn: 578 init1: 417 opt: 588  Z-score: 772.4  bits: 149.3 E(85289): 2.8e-36
Smith-Waterman score: 588; 50.0% identity (75.6% similar) in 172 aa overlap (1-166:5-175)

                   10        20        30        40        50      
pF1KB6     MAQTSSYFMLISCLMFLSQSQGQEAQTELPQARISCPEGTNAYRSYCYYFNEDRET
           ::  :  .::.::::.::: ::.: : :::.::: ::.:..:: :.:: .  . ..
NP_002 MLPPMALPSVSWMLLSCLMLLSQVQGEEPQRELPSARIRCPKGSKAYGSHCYALFLSPKS
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KB6 WVDADLYCQNMNSGNLVSVLTQAEGAFVASLIKESGTDDFNVWIGLHDPKKNRR-----W
       :.:::: ::.  ::::::::. :::.::.::.:  :..   :::::::: .. .     :
NP_002 WTDADLACQKRPSGNLVSVLSGAEGSFVSSLVKSIGNSYSYVWIGLHDPTQGTEPNGEGW
               70        80        90       100       110       120

             120       130        140       150       160      
pF1KB6 HWSSGSLVSYKSWGIGAPSSVN-PGYCVSLTSSTGFQKWKDVPCEDKFSFVCKFKN
       .:::.....: .:    ::... ::.:.::. ::.: .:::  :. .. .:::: .
NP_002 EWSSSDVMNYFAWE-RNPSTISSPGHCASLSRSTAFLRWKDYNCNVRLPYVCKFTD
              130        140       150       160       170     

>>NP_620355 (OMIM: 167805) regenerating islet-derived pr  (175 aa)
 initn: 578 init1: 417 opt: 588  Z-score: 772.4  bits: 149.3 E(85289): 2.8e-36
Smith-Waterman score: 588; 50.0% identity (75.6% similar) in 172 aa overlap (1-166:5-175)

                   10        20        30        40        50      
pF1KB6     MAQTSSYFMLISCLMFLSQSQGQEAQTELPQARISCPEGTNAYRSYCYYFNEDRET
           ::  :  .::.::::.::: ::.: : :::.::: ::.:..:: :.:: .  . ..
NP_620 MLPPMALPSVSWMLLSCLMLLSQVQGEEPQRELPSARIRCPKGSKAYGSHCYALFLSPKS
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KB6 WVDADLYCQNMNSGNLVSVLTQAEGAFVASLIKESGTDDFNVWIGLHDPKKNRR-----W
       :.:::: ::.  ::::::::. :::.::.::.:  :..   :::::::: .. .     :
NP_620 WTDADLACQKRPSGNLVSVLSGAEGSFVSSLVKSIGNSYSYVWIGLHDPTQGTEPNGEGW
               70        80        90       100       110       120

             120       130        140       150       160      
pF1KB6 HWSSGSLVSYKSWGIGAPSSVN-PGYCVSLTSSTGFQKWKDVPCEDKFSFVCKFKN
       .:::.....: .:    ::... ::.:.::. ::.: .:::  :. .. .:::: .
NP_620 EWSSSDVMNYFAWE-RNPSTISSPGHCASLSRSTAFLRWKDYNCNVRLPYVCKFTD
              130        140       150       160       170     

>>NP_620354 (OMIM: 167805) regenerating islet-derived pr  (175 aa)
 initn: 578 init1: 417 opt: 588  Z-score: 772.4  bits: 149.3 E(85289): 2.8e-36
Smith-Waterman score: 588; 50.0% identity (75.6% similar) in 172 aa overlap (1-166:5-175)

                   10        20        30        40        50      
pF1KB6     MAQTSSYFMLISCLMFLSQSQGQEAQTELPQARISCPEGTNAYRSYCYYFNEDRET
           ::  :  .::.::::.::: ::.: : :::.::: ::.:..:: :.:: .  . ..
NP_620 MLPPMALPSVSWMLLSCLMLLSQVQGEEPQRELPSARIRCPKGSKAYGSHCYALFLSPKS
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KB6 WVDADLYCQNMNSGNLVSVLTQAEGAFVASLIKESGTDDFNVWIGLHDPKKNRR-----W
       :.:::: ::.  ::::::::. :::.::.::.:  :..   :::::::: .. .     :
NP_620 WTDADLACQKRPSGNLVSVLSGAEGSFVSSLVKSIGNSYSYVWIGLHDPTQGTEPNGEGW
               70        80        90       100       110       120

             120       130        140       150       160      
pF1KB6 HWSSGSLVSYKSWGIGAPSSVN-PGYCVSLTSSTGFQKWKDVPCEDKFSFVCKFKN
       .:::.....: .:    ::... ::.:.::. ::.: .:::  :. .. .:::: .
NP_620 EWSSSDVMNYFAWE-RNPSTISSPGHCASLSRSTAFLRWKDYNCNVRLPYVCKFTD
              130        140       150       160       170     

>>NP_001008388 (OMIM: 609933) regenerating islet-derived  (175 aa)
 initn: 574 init1: 384 opt: 582  Z-score: 764.6  bits: 147.9 E(85289): 7.5e-36
Smith-Waterman score: 582; 48.5% identity (74.3% similar) in 171 aa overlap (1-166:5-175)

                   10        20        30        40        50      
pF1KB6     MAQTSSYFMLISCLMFLSQSQGQEAQTELPQARISCPEGTNAYRSYCYYFNEDRET
           ::  :  .::.:::..: : ::.:.: :::. :::::.:..:: : :: .  . ..
NP_001 MLPPMALPSVSWMLLSCLILLCQVQGEETQKELPSPRISCPKGSKAYGSPCYALFLSPKS
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KB6 WVDADLYCQNMNSGNLVSVLTQAEGAFVASLIKESGTDDFNVWIGLHDPKKNRR-----W
       :.:::: ::.  ::.:::::. :::.::.::..  ...   .::::::: .. .     :
NP_001 WMDADLACQKRPSGKLVSVLSGAEGSFVSSLVRSISNSYSYIWIGLHDPTQGSEPDGDGW
               70        80        90       100       110       120

             120       130       140       150       160      
pF1KB6 HWSSGSLVSYKSWGIGAPSSVNPGYCVSLTSSTGFQKWKDVPCEDKFSFVCKFKN
       .::: ....: .:  .  . .:::.: ::. :::: ::::  :. :. .:::::.
NP_001 EWSSTDVMNYFAWEKNPSTILNPGHCGSLSRSTGFLKWKDYNCDAKLPYVCKFKD
              130       140       150       160       170     

>>NP_940850 (OMIM: 609933) regenerating islet-derived pr  (175 aa)
 initn: 574 init1: 384 opt: 582  Z-score: 764.6  bits: 147.9 E(85289): 7.5e-36
Smith-Waterman score: 582; 48.5% identity (74.3% similar) in 171 aa overlap (1-166:5-175)

                   10        20        30        40        50      
pF1KB6     MAQTSSYFMLISCLMFLSQSQGQEAQTELPQARISCPEGTNAYRSYCYYFNEDRET
           ::  :  .::.:::..: : ::.:.: :::. :::::.:..:: : :: .  . ..
NP_940 MLPPMALPSVSWMLLSCLILLCQVQGEETQKELPSPRISCPKGSKAYGSPCYALFLSPKS
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KB6 WVDADLYCQNMNSGNLVSVLTQAEGAFVASLIKESGTDDFNVWIGLHDPKKNRR-----W
       :.:::: ::.  ::.:::::. :::.::.::..  ...   .::::::: .. .     :
NP_940 WMDADLACQKRPSGKLVSVLSGAEGSFVSSLVRSISNSYSYIWIGLHDPTQGSEPDGDGW
               70        80        90       100       110       120

             120       130       140       150       160      
pF1KB6 HWSSGSLVSYKSWGIGAPSSVNPGYCVSLTSSTGFQKWKDVPCEDKFSFVCKFKN
       .::: ....: .:  .  . .:::.: ::. :::: ::::  :. :. .:::::.
NP_940 EWSSTDVMNYFAWEKNPSTILNPGHCGSLSRSTGFLKWKDYNCDAKLPYVCKFKD
              130       140       150       160       170     

>>XP_005264192 (OMIM: 609933) PREDICTED: regenerating is  (175 aa)
 initn: 574 init1: 384 opt: 582  Z-score: 764.6  bits: 147.9 E(85289): 7.5e-36
Smith-Waterman score: 582; 48.5% identity (74.3% similar) in 171 aa overlap (1-166:5-175)

                   10        20        30        40        50      
pF1KB6     MAQTSSYFMLISCLMFLSQSQGQEAQTELPQARISCPEGTNAYRSYCYYFNEDRET
           ::  :  .::.:::..: : ::.:.: :::. :::::.:..:: : :: .  . ..
XP_005 MLPPMALPSVSWMLLSCLILLCQVQGEETQKELPSPRISCPKGSKAYGSPCYALFLSPKS
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KB6 WVDADLYCQNMNSGNLVSVLTQAEGAFVASLIKESGTDDFNVWIGLHDPKKNRR-----W
       :.:::: ::.  ::.:::::. :::.::.::..  ...   .::::::: .. .     :
XP_005 WMDADLACQKRPSGKLVSVLSGAEGSFVSSLVRSISNSYSYIWIGLHDPTQGSEPDGDGW
               70        80        90       100       110       120

             120       130       140       150       160      
pF1KB6 HWSSGSLVSYKSWGIGAPSSVNPGYCVSLTSSTGFQKWKDVPCEDKFSFVCKFKN
       .::: ....: .:  .  . .:::.: ::. :::: ::::  :. :. .:::::.
XP_005 EWSSTDVMNYFAWEKNPSTILNPGHCGSLSRSTGFLKWKDYNCDAKLPYVCKFKD
              130       140       150       160       170     

>>NP_001152824 (OMIM: 609846) regenerating islet-derived  (158 aa)
 initn: 238 init1: 218 opt: 317  Z-score: 420.5  bits: 84.1 E(85289): 1.1e-16
Smith-Waterman score: 317; 36.0% identity (67.6% similar) in 136 aa overlap (33-165:27-157)

             10        20        30        40         50        60 
pF1KB6 QTSSYFMLISCLMFLSQSQGQEAQTELPQARISCPEGTNAYRSYCY-YFNEDRETWVDAD
                                     : ::  :   ..: :: :: . :. : ::.
NP_001     MASRSMRLLLLLSCLAKTGVLGDIIMRPSCAPGWFYHKSNCYGYFRKLRN-WSDAE
                   10        20        30        40        50      

              70         80        90        100       110         
pF1KB6 LYCQNMNSG-NLVSVLTQAEGAFVASLIKESGTDDFN-VWIGLHDPKKNRRWHWSSGSLV
       : ::....: .:.:.:.  :.. .:  :  :: .  . .:::::::.: ..:.: .:.. 
NP_001 LECQSYGNGAHLASILSLKEASTIAEYI--SGYQRSQPIWIGLHDPQKRQQWQWIDGAMY
          60        70        80          90       100       110   

     120       130       140       150       160      
pF1KB6 SYKSWGIGAPSSVNPGYCVSLTSSTGFQKWKDVPCEDKFSFVCKFKN
        :.::. :   . :  .:. ..:...:  :..  :. .  :.::.. 
NP_001 LYRSWS-GKSMGGNK-HCAEMSSNNNFLTWSSNECNKRQHFLCKYRP
            120        130       140       150        

>>NP_114433 (OMIM: 609846) regenerating islet-derived pr  (158 aa)
 initn: 238 init1: 218 opt: 317  Z-score: 420.5  bits: 84.1 E(85289): 1.1e-16
Smith-Waterman score: 317; 36.0% identity (67.6% similar) in 136 aa overlap (33-165:27-157)

             10        20        30        40         50        60 
pF1KB6 QTSSYFMLISCLMFLSQSQGQEAQTELPQARISCPEGTNAYRSYCY-YFNEDRETWVDAD
                                     : ::  :   ..: :: :: . :. : ::.
NP_114     MASRSMRLLLLLSCLAKTGVLGDIIMRPSCAPGWFYHKSNCYGYFRKLRN-WSDAE
                   10        20        30        40        50      

              70         80        90        100       110         
pF1KB6 LYCQNMNSG-NLVSVLTQAEGAFVASLIKESGTDDFN-VWIGLHDPKKNRRWHWSSGSLV
       : ::....: .:.:.:.  :.. .:  :  :: .  . .:::::::.: ..:.: .:.. 
NP_114 LECQSYGNGAHLASILSLKEASTIAEYI--SGYQRSQPIWIGLHDPQKRQQWQWIDGAMY
          60        70        80          90       100       110   

     120       130       140       150       160      
pF1KB6 SYKSWGIGAPSSVNPGYCVSLTSSTGFQKWKDVPCEDKFSFVCKFKN
        :.::. :   . :  .:. ..:...:  :..  :. .  :.::.. 
NP_114 LYRSWS-GKSMGGNK-HCAEMSSNNNFLTWSSNECNKRQHFLCKYRP
            120        130       140       150        




166 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:06:05 2016 done: Sat Nov  5 14:06:06 2016
 Total Scan time:  4.540 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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