Result of FASTA (ccds) for pF1KB6829
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6829, 166 aa
  1>>>pF1KB6829 166 - 166 aa - 166 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3434+/-0.000719; mu= 11.6890+/- 0.043
 mean_var=57.2458+/-11.482, 0's: 0 Z-trim(108.9): 120  B-trim: 304 in 1/50
 Lambda= 0.169513
 statistics sampled from 10378 (10503) to 10378 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.323), width:  16
 Scan time:  1.660

The best scores are:                                      opt bits E(32554)
CCDS1964.1 REG1A gene_id:5967|Hs108|chr2           ( 166) 1165 292.6 7.5e-80
CCDS1963.1 REG1B gene_id:5968|Hs108|chr2           ( 166) 1006 253.7 3.8e-68
CCDS1965.1 REG3A gene_id:5068|Hs108|chr2           ( 175)  588 151.5 2.4e-37
CCDS1962.1 REG3G gene_id:130120|Hs108|chr2         ( 175)  582 150.0 6.6e-37
CCDS906.1 REG4 gene_id:83998|Hs108|chr1            ( 158)  317 85.2 1.9e-17
CCDS56087.1 CLEC17A gene_id:388512|Hs108|chr19     ( 378)  268 73.3 1.7e-13
CCDS32782.1 COLEC12 gene_id:81035|Hs108|chr18      ( 742)  264 72.4 6.2e-13
CCDS53971.1 ACAN gene_id:176|Hs108|chr15           (2431)  264 72.6 1.8e-12
CCDS53970.1 ACAN gene_id:176|Hs108|chr15           (2530)  264 72.6 1.9e-12
CCDS12184.1 FCER2 gene_id:2208|Hs108|chr19         ( 321)  252 69.4 2.2e-12
CCDS11634.1 MRC2 gene_id:9902|Hs108|chr17          (1479)  258 71.1 3.2e-12
CCDS12397.1 NCAN gene_id:1463|Hs108|chr19          (1321)  253 69.8 6.8e-12
CCDS31739.1 CLEC6A gene_id:93978|Hs108|chr12       ( 209)  230 64.0 6.3e-11
CCDS7123.2 MRC1 gene_id:4360|Hs108|chr10           (1456)  239 66.4   8e-11
CCDS56017.1 ASGR1 gene_id:432|Hs108|chr17          ( 252)  229 63.7 8.9e-11
CCDS47242.1 VCAN gene_id:1462|Hs108|chr5           ( 655)  234 65.1   9e-11
CCDS11088.1 ASGR2 gene_id:433|Hs108|chr17          ( 287)  229 63.8   1e-10


>>CCDS1964.1 REG1A gene_id:5967|Hs108|chr2                (166 aa)
 initn: 1165 init1: 1165 opt: 1165  Z-score: 1547.0  bits: 292.6 E(32554): 7.5e-80
Smith-Waterman score: 1165; 100.0% identity (100.0% similar) in 166 aa overlap (1-166:1-166)

               10        20        30        40        50        60
pF1KB6 MAQTSSYFMLISCLMFLSQSQGQEAQTELPQARISCPEGTNAYRSYCYYFNEDRETWVDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 MAQTSSYFMLISCLMFLSQSQGQEAQTELPQARISCPEGTNAYRSYCYYFNEDRETWVDA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DLYCQNMNSGNLVSVLTQAEGAFVASLIKESGTDDFNVWIGLHDPKKNRRWHWSSGSLVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 DLYCQNMNSGNLVSVLTQAEGAFVASLIKESGTDDFNVWIGLHDPKKNRRWHWSSGSLVS
               70        80        90       100       110       120

              130       140       150       160      
pF1KB6 YKSWGIGAPSSVNPGYCVSLTSSTGFQKWKDVPCEDKFSFVCKFKN
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 YKSWGIGAPSSVNPGYCVSLTSSTGFQKWKDVPCEDKFSFVCKFKN
              130       140       150       160      

>>CCDS1963.1 REG1B gene_id:5968|Hs108|chr2                (166 aa)
 initn: 1006 init1: 1006 opt: 1006  Z-score: 1336.9  bits: 253.7 E(32554): 3.8e-68
Smith-Waterman score: 1006; 86.7% identity (92.8% similar) in 166 aa overlap (1-166:1-166)

               10        20        30        40        50        60
pF1KB6 MAQTSSYFMLISCLMFLSQSQGQEAQTELPQARISCPEGTNAYRSYCYYFNEDRETWVDA
       ::::.:.::::: ::::: :::::.:::::. ::::::::::::::::::::: ::::::
CCDS19 MAQTNSFFMLISSLMFLSLSQGQESQTELPNPRISCPEGTNAYRSYCYYFNEDPETWVDA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DLYCQNMNSGNLVSVLTQAEGAFVASLIKESGTDDFNVWIGLHDPKKNRRWHWSSGSLVS
       :::::::::::::::::::::::::::::::.::: ::::::::::::::::::::::::
CCDS19 DLYCQNMNSGNLVSVLTQAEGAFVASLIKESSTDDSNVWIGLHDPKKNRRWHWSSGSLVS
               70        80        90       100       110       120

              130       140       150       160      
pF1KB6 YKSWGIGAPSSVNPGYCVSLTSSTGFQKWKDVPCEDKFSFVCKFKN
       ::::  :.:::.: :::.:::: .::.::::  :: ::::::::::
CCDS19 YKSWDTGSPSSANAGYCASLTSCSGFKKWKDESCEKKFSFVCKFKN
              130       140       150       160      

>>CCDS1965.1 REG3A gene_id:5068|Hs108|chr2                (175 aa)
 initn: 578 init1: 417 opt: 588  Z-score: 784.0  bits: 151.5 E(32554): 2.4e-37
Smith-Waterman score: 588; 50.0% identity (75.6% similar) in 172 aa overlap (1-166:5-175)

                   10        20        30        40        50      
pF1KB6     MAQTSSYFMLISCLMFLSQSQGQEAQTELPQARISCPEGTNAYRSYCYYFNEDRET
           ::  :  .::.::::.::: ::.: : :::.::: ::.:..:: :.:: .  . ..
CCDS19 MLPPMALPSVSWMLLSCLMLLSQVQGEEPQRELPSARIRCPKGSKAYGSHCYALFLSPKS
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KB6 WVDADLYCQNMNSGNLVSVLTQAEGAFVASLIKESGTDDFNVWIGLHDPKKNRR-----W
       :.:::: ::.  ::::::::. :::.::.::.:  :..   :::::::: .. .     :
CCDS19 WTDADLACQKRPSGNLVSVLSGAEGSFVSSLVKSIGNSYSYVWIGLHDPTQGTEPNGEGW
               70        80        90       100       110       120

             120       130        140       150       160      
pF1KB6 HWSSGSLVSYKSWGIGAPSSVN-PGYCVSLTSSTGFQKWKDVPCEDKFSFVCKFKN
       .:::.....: .:    ::... ::.:.::. ::.: .:::  :. .. .:::: .
CCDS19 EWSSSDVMNYFAWE-RNPSTISSPGHCASLSRSTAFLRWKDYNCNVRLPYVCKFTD
              130        140       150       160       170     

>>CCDS1962.1 REG3G gene_id:130120|Hs108|chr2              (175 aa)
 initn: 574 init1: 384 opt: 582  Z-score: 776.1  bits: 150.0 E(32554): 6.6e-37
Smith-Waterman score: 582; 48.5% identity (74.3% similar) in 171 aa overlap (1-166:5-175)

                   10        20        30        40        50      
pF1KB6     MAQTSSYFMLISCLMFLSQSQGQEAQTELPQARISCPEGTNAYRSYCYYFNEDRET
           ::  :  .::.:::..: : ::.:.: :::. :::::.:..:: : :: .  . ..
CCDS19 MLPPMALPSVSWMLLSCLILLCQVQGEETQKELPSPRISCPKGSKAYGSPCYALFLSPKS
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KB6 WVDADLYCQNMNSGNLVSVLTQAEGAFVASLIKESGTDDFNVWIGLHDPKKNRR-----W
       :.:::: ::.  ::.:::::. :::.::.::..  ...   .::::::: .. .     :
CCDS19 WMDADLACQKRPSGKLVSVLSGAEGSFVSSLVRSISNSYSYIWIGLHDPTQGSEPDGDGW
               70        80        90       100       110       120

             120       130       140       150       160      
pF1KB6 HWSSGSLVSYKSWGIGAPSSVNPGYCVSLTSSTGFQKWKDVPCEDKFSFVCKFKN
       .::: ....: .:  .  . .:::.: ::. :::: ::::  :. :. .:::::.
CCDS19 EWSSTDVMNYFAWEKNPSTILNPGHCGSLSRSTGFLKWKDYNCDAKLPYVCKFKD
              130       140       150       160       170     

>>CCDS906.1 REG4 gene_id:83998|Hs108|chr1                 (158 aa)
 initn: 238 init1: 218 opt: 317  Z-score: 426.6  bits: 85.2 E(32554): 1.9e-17
Smith-Waterman score: 317; 36.0% identity (67.6% similar) in 136 aa overlap (33-165:27-157)

             10        20        30        40         50        60 
pF1KB6 QTSSYFMLISCLMFLSQSQGQEAQTELPQARISCPEGTNAYRSYCY-YFNEDRETWVDAD
                                     : ::  :   ..: :: :: . :. : ::.
CCDS90     MASRSMRLLLLLSCLAKTGVLGDIIMRPSCAPGWFYHKSNCYGYFRKLRN-WSDAE
                   10        20        30        40        50      

              70         80        90        100       110         
pF1KB6 LYCQNMNSG-NLVSVLTQAEGAFVASLIKESGTDDFN-VWIGLHDPKKNRRWHWSSGSLV
       : ::....: .:.:.:.  :.. .:  :  :: .  . .:::::::.: ..:.: .:.. 
CCDS90 LECQSYGNGAHLASILSLKEASTIAEYI--SGYQRSQPIWIGLHDPQKRQQWQWIDGAMY
          60        70        80          90       100       110   

     120       130       140       150       160      
pF1KB6 SYKSWGIGAPSSVNPGYCVSLTSSTGFQKWKDVPCEDKFSFVCKFKN
        :.::. :   . :  .:. ..:...:  :..  :. .  :.::.. 
CCDS90 LYRSWS-GKSMGGNK-HCAEMSSNNNFLTWSSNECNKRQHFLCKYRP
            120        130       140       150        

>>CCDS56087.1 CLEC17A gene_id:388512|Hs108|chr19          (378 aa)
 initn: 128 init1: 128 opt: 268  Z-score: 355.7  bits: 73.3 E(32554): 1.7e-13
Smith-Waterman score: 268; 31.6% identity (61.7% similar) in 133 aa overlap (33-165:251-375)

             10        20        30        40        50        60  
pF1KB6 QTSSYFMLISCLMFLSQSQGQEAQTELPQARISCPEGTNAYRSYCYYFNEDRETWVDADL
                                     ::.::::   ... ::::. . ..: .: .
CCDS56 GLAGLKHDIARVRADTNQSLVELWGLLDCRRITCPEGWLPFEGKCYYFSPSTKSWDEARM
              230       240       250       260       270       280

             70        80        90       100       110       120  
pF1KB6 YCQNMNSGNLVSVLTQAEGAFVASLIKESGTDDFNVWIGLHDPKKNRRWHWSSGSLVSYK
       .::. : ..:: . . ::  :::   :  :.     :.::.:  ..  :.: .:: :. .
CCDS56 FCQE-NYSHLVIINSFAEHNFVA---KAHGSPRV-YWLGLNDRAQEGDWRWLDGSPVTLS
               290       300          310        320       330     

            130       140       150       160        
pF1KB6 SWGIGAPSSVNPGYCVSLTSSTGFQKWKDVPCEDKFSFVCKFKN  
        :    :....   :...... :   :.:. :     ..:. :   
CCDS56 FWEPEEPNNIHDEDCATMNKG-G--TWNDLSCYKTTYWICERKCSC
         340       350          360       370        

>>CCDS32782.1 COLEC12 gene_id:81035|Hs108|chr18           (742 aa)
 initn: 241 init1: 117 opt: 264  Z-score: 345.6  bits: 72.4 E(32554): 6.2e-13
Smith-Waterman score: 264; 30.8% identity (61.0% similar) in 146 aa overlap (23-163:595-731)

                       10        20        30        40        50  
pF1KB6         MAQTSSYFMLISCLMFLSQSQGQEAQTELPQARISCPEGTNAYRSYCYYFNE
                                     :.  :  :.   .::   . . . ::::. 
CCDS32 PGLPGVPGMPGPKGPPGPPGPSGAVVPLALQNEPTPAPEDN-GCPPHWKNFTDKCYYFSV
          570       580       590       600        610       620   

             60        70        80        90       100       110  
pF1KB6 DRETWVDADLYCQNMNSGNLVSVLTQAEGAFVASLIKESGTDDFNVWIGLHDPKKNRRWH
       ..: . :: :.:.. .:..:: . :. :  .    ::.. .   . :::: : ... .:.
CCDS32 EKEIFEDAKLFCED-KSSHLVFINTREEQQW----IKKQMVGRESHWIGLTDSERENEWK
           630        640       650           660       670        

            120       130            140       150       160       
pF1KB6 WSSGSLVSYKSWGIGAPSSVNPGY-----CVSLTSSTGFQKWKDVPCEDKFSFVCKFKN 
       : .:.  .::.:  : :.. . :.     :..:  . :  .:.:  :::  .:.:.    
CCDS32 WLDGTSPDYKNWKAGQPDNWGHGHGPGEDCAGLIYA-G--QWNDFQCEDVNNFICEKDRE
      680       690       700       710          720       730     

CCDS32 TVLSSAL
         740  

>>CCDS53971.1 ACAN gene_id:176|Hs108|chr15                (2431 aa)
 initn: 225 init1: 118 opt: 264  Z-score: 337.2  bits: 72.6 E(32554): 1.8e-12
Smith-Waterman score: 264; 35.1% identity (64.1% similar) in 131 aa overlap (36-163:2282-2403)

          10        20        30        40        50        60     
pF1KB6 SYFMLISCLMFLSQSQGQEAQTELPQARISCPEGTNAYRSYCYYFNEDRETWVDADLYCQ
                                     : :: : :...::    ::::::::.  :.
CCDS53 ETATSPTDASIPASPEWKRESESTAADQEVCEEGWNKYQGHCYRHFPDRETWVDAERRCR
            2260      2270      2280      2290      2300      2310 

          70        80        90       100       110       120     
pF1KB6 NMNSGNLVSVLTQAEGAFVASLIKESGTDDFNVWIGLHDPKKNRRWHWSSGSLVSYKSWG
       ...: .: :..:  :  ::     .....:.. ::::.:   .  ..::.:  .....: 
CCDS53 EQQS-HLSSIVTPEEQEFV-----NNNAQDYQ-WIGLNDRTIEGDFRWSDGHPMQFENWR
             2320           2330       2340      2350      2360    

         130         140        150       160                      
pF1KB6 IGAPSSV-NPGY-CVSLT-SSTGFQKWKDVPCEDKFSFVCKFKN                
        . :..    :  :: .     :  .:.::::. .. :.::                   
CCDS53 PNQPDNFFAAGEDCVVMIWHEKG--EWNDVPCNYHLPFTCKKGTATTYKRRLQKRSSRHP
         2370      2380        2390      2400      2410      2420  

CCDS53 RRSRPSTAH
           2430 

>>CCDS53970.1 ACAN gene_id:176|Hs108|chr15                (2530 aa)
 initn: 225 init1: 118 opt: 264  Z-score: 337.0  bits: 72.6 E(32554): 1.9e-12
Smith-Waterman score: 264; 35.1% identity (64.1% similar) in 131 aa overlap (36-163:2320-2441)

          10        20        30        40        50        60     
pF1KB6 SYFMLISCLMFLSQSQGQEAQTELPQARISCPEGTNAYRSYCYYFNEDRETWVDADLYCQ
                                     : :: : :...::    ::::::::.  :.
CCDS53 AGTCKETEGHVICLCPPGYTGEHCNIDQEVCEEGWNKYQGHCYRHFPDRETWVDAERRCR
    2290      2300      2310      2320      2330      2340         

          70        80        90       100       110       120     
pF1KB6 NMNSGNLVSVLTQAEGAFVASLIKESGTDDFNVWIGLHDPKKNRRWHWSSGSLVSYKSWG
       ...: .: :..:  :  ::     .....:.. ::::.:   .  ..::.:  .....: 
CCDS53 EQQS-HLSSIVTPEEQEFV-----NNNAQDYQ-WIGLNDRTIEGDFRWSDGHPMQFENWR
    2350       2360           2370       2380      2390      2400  

         130         140        150       160                      
pF1KB6 IGAPSSV-NPGY-CVSLT-SSTGFQKWKDVPCEDKFSFVCKFKN                
        . :..    :  :: .     :  .:.::::. .. :.::                   
CCDS53 PNQPDNFFAAGEDCVVMIWHEKG--EWNDVPCNYHLPFTCKKGTVACGEPPVVEHARTFG
           2410      2420        2430      2440      2450      2460

CCDS53 QKKDRYEINSLVRYQCTEGFVQRHMPTIRCQPSGHWEEPQITCTDPTTYKRRLQKRSSRH
             2470      2480      2490      2500      2510      2520

>>CCDS12184.1 FCER2 gene_id:2208|Hs108|chr19              (321 aa)
 initn: 191 init1:  99 opt: 252  Z-score: 335.7  bits: 69.4 E(32554): 2.2e-12
Smith-Waterman score: 252; 32.3% identity (63.1% similar) in 130 aa overlap (35-162:162-282)

           10        20        30        40        50        60    
pF1KB6 SSYFMLISCLMFLSQSQGQEAQTELPQARISCPEGTNAYRSYCYYFNEDRETWVDADLYC
                                     .:::    ..  ::::..  . :: :   :
CCDS12 NEASDLLERLREEVTKLRMELQVSSGFVCNTCPEKWINFQRKCYYFGKGTKQWVHARYAC
             140       150       160       170       180       190 

           70        80        90       100       110       120    
pF1KB6 QNMNSGNLVSVLTQAEGAFVASLIKESGTDDFNVWIGLHDPKKNRRWHWSSGSLVSYKSW
       ..:. :.:::. .  :  :...  ...:.     ::::..   . .. : .:: :.:..:
CCDS12 DDME-GQLVSIHSPEEQDFLTKHASHTGS-----WIGLRNLDLKGEFIWVDGSHVDYSNW
              200       210            220       230       240     

          130        140       150        160                      
pF1KB6 GIGAPSSVNPGY-CVSLTSSTGFQKWKDVPCEDKF-SFVCKFKN                
       . : :.: . :  :: . .:    .:.:. :. :. ..::                    
CCDS12 APGEPTSRSQGEDCVMMRGS---GRWNDAFCDRKLGAWVCDRLATCTPPASEGSAESMGP
         250       260          270       280       290       300  

CCDS12 DSRPDPDGRLPTPSAPLHS
            310       320 




166 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:06:04 2016 done: Sat Nov  5 14:06:04 2016
 Total Scan time:  1.660 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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