Result of FASTA (omim) for pF1KB6720
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6720, 134 aa
  1>>>pF1KB6720 134 - 134 aa - 134 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8877+/-0.000358; mu= 12.9166+/- 0.022
 mean_var=53.7980+/-10.861, 0's: 0 Z-trim(112.6): 39  B-trim: 0 in 0/49
 Lambda= 0.174860
 statistics sampled from 21600 (21639) to 21600 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.632), E-opt: 0.2 (0.254), width:  16
 Scan time:  4.100

The best scores are:                                      opt bits E(85289)
NP_004155 (OMIM: 180280) retinol-binding protein 2 ( 134)  911 237.5   5e-63
NP_443192 (OMIM: 608604) retinoid-binding protein  ( 134)  556 147.9 4.6e-36
NP_002890 (OMIM: 180260) retinol-binding protein 1 ( 197)  495 132.6 2.7e-31
NP_113679 (OMIM: 611866) retinol-binding protein 5 ( 135)  460 123.7   9e-29
XP_016875491 (OMIM: 611866) PREDICTED: retinol-bin ( 126)  417 112.8 1.6e-25
NP_001316383 (OMIM: 611866) retinol-binding protei (  86)  354 96.9 6.9e-21
NP_004093 (OMIM: 134651) fatty acid-binding protei ( 133)  330 90.9 6.6e-19
NP_001437 (OMIM: 602965) fatty acid-binding protei ( 132)  301 83.6   1e-16
NP_001433 (OMIM: 600434) fatty acid-binding protei ( 132)  295 82.1   3e-16
XP_011539309 (OMIM: 134651) PREDICTED: fatty acid- ( 126)  291 81.0 5.8e-16
XP_016855832 (OMIM: 180231) PREDICTED: cellular re ( 138)  286 79.8 1.5e-15
NP_001869 (OMIM: 180231) cellular retinoic acid-bi ( 138)  286 79.8 1.5e-15
NP_001186652 (OMIM: 180231) cellular retinoic acid ( 138)  286 79.8 1.5e-15
NP_004369 (OMIM: 180230) cellular retinoic acid-bi ( 137)  282 78.8   3e-15
NP_001305968 (OMIM: 602965) fatty acid-binding pro ( 166)  272 76.3   2e-14
NP_002668 (OMIM: 170715) myelin P2 protein [Homo s ( 132)  268 75.3 3.4e-14
NP_001124464 (OMIM: 180260) retinol-binding protei ( 157)  262 73.8 1.1e-13
NP_001124465 (OMIM: 180260) retinol-binding protei ( 153)  259 73.0 1.8e-13
NP_001307925 (OMIM: 134651) fatty acid-binding pro ( 144)  257 72.5 2.5e-13
NP_001305971 (OMIM: 602965) fatty acid-binding pro ( 128)  230 65.7 2.5e-11
NP_001305970 (OMIM: 602965) fatty acid-binding pro (  97)  218 62.6 1.6e-10
NP_000125 (OMIM: 134640) fatty acid-binding protei ( 132)  190 55.6 2.8e-08
NP_001435 (OMIM: 605168) fatty acid-binding protei ( 135)  184 54.1 8.2e-08
NP_001434 (OMIM: 134650) fatty acid-binding protei ( 127)  154 46.5 1.5e-05
NP_001436 (OMIM: 600422) gastrotropin isoform 2 [H ( 128)  130 40.4 0.00099
NP_001124430 (OMIM: 600422) gastrotropin isoform 1 ( 177)  130 40.5  0.0013
NP_001035532 (OMIM: 600422) gastrotropin isoform 1 ( 177)  130 40.5  0.0013


>>NP_004155 (OMIM: 180280) retinol-binding protein 2 [Ho  (134 aa)
 initn: 911 init1: 911 opt: 911  Z-score: 1252.5  bits: 237.5 E(85289): 5e-63
Smith-Waterman score: 911; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)

               10        20        30        40        50        60
pF1KB6 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTFRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTFRN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 YDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGEKENRGWKQWIEGDKLYLEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 YDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGEKENRGWKQWIEGDKLYLEL
               70        80        90       100       110       120

              130    
pF1KB6 TCGDQVCRQVFKKK
       ::::::::::::::
NP_004 TCGDQVCRQVFKKK
              130    

>>NP_443192 (OMIM: 608604) retinoid-binding protein 7 [H  (134 aa)
 initn: 558 init1: 545 opt: 556  Z-score: 768.5  bits: 147.9 E(85289): 4.6e-36
Smith-Waterman score: 556; 59.4% identity (80.5% similar) in 133 aa overlap (1-133:1-133)

               10        20        30        40        50        60
pF1KB6 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTFRN
       :  : .::: . :..:::::: :: :::::::::  :   :::.:.::.:  .:.:..::
NP_443 MPADLSGTWTLLSSDNFEGYMLALGIDFATRKIAKLLKPQKVIEQNGDSFTIHTNSSLRN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 YDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGEKENRGWKQWIEGDKLYLEL
       : : : :: :::: ...::::. :.:: :..: :.:.:::::.:::: .:::::::.::.
NP_443 YFVKFKVGEEFDEDNRGLDNRKCKSLVIWDNDRLTCIQKGEKKNRGWTHWIEGDKLHLEM
               70        80        90       100       110       120

              130    
pF1KB6 TCGDQVCRQVFKKK
        :  :::.:.:.. 
NP_443 FCEGQVCKQTFQRA
              130    

>>NP_002890 (OMIM: 180260) retinol-binding protein 1 iso  (197 aa)
 initn: 464 init1: 464 opt: 495  Z-score: 682.8  bits: 132.6 E(85289): 2.7e-31
Smith-Waterman score: 495; 55.6% identity (72.9% similar) in 133 aa overlap (1-133:63-195)

                                             10        20        30
pF1KB6                               MTRDQNGTWEMESNENFEGYMKALDIDFAT
                                     :  : .: :.:  ::::: :..:::.. : 
NP_002 HHPRSTGSRCPGSLQPSRPLVANWLQSLPEMPVDFTGYWKMLVNENFEEYLRALDVNVAL
             40        50        60        70        80        90  

               40        50        60        70        80        90
pF1KB6 RKIAVRLTQTKVIDQDGDNFKTKTTSTFRNYDVDFTVGVEFDEYTKSLDNRHVKALVTWE
       ::::  :   : : ::::..  .: :::::: .:: :: ::.:   ..:.:.  . :.:.
NP_002 RKIANLLKPDKEIVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMTTVSWD
            100       110       120       130       140       150  

              100       110       120       130     
pF1KB6 GDVLVCVQKGEKENRGWKQWIEGDKLYLELTCGDQVCRQVFKKK 
       :: : ::::::::.::: ::::::.:.::.     ::.:::::  
NP_002 GDKLQCVQKGEKEGRGWTQWIEGDELHLEMRVEGVVCKQVFKKVQ
            160       170       180       190       

>>NP_113679 (OMIM: 611866) retinol-binding protein 5 iso  (135 aa)
 initn: 437 init1: 421 opt: 460  Z-score: 637.6  bits: 123.7 E(85289): 9e-29
Smith-Waterman score: 460; 51.1% identity (80.5% similar) in 133 aa overlap (1-133:1-133)

               10        20        30        40        50        60
pF1KB6 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTFRN
       :  . .: ... :..:.: :..::.:..:.::::. :   : :...:... ..: :::::
NP_113 MPPNLTGYYRFVSQKNMEDYLQALNISLAVRKIALLLKPDKEIEHQGNHMTVRTLSTFRN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 YDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGEKENRGWKQWIEGDKLYLEL
       : :.: :::::.:  .:.:.:. ...:::: . ::::::::  ::::..:.::. :::::
NP_113 YTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVCVQKGEVPNRGWRHWLEGEMLYLEL
               70        80        90       100       110       120

              130     
pF1KB6 TCGDQVCRQVFKKK 
       :  : ::.:::.:  
NP_113 TARDAVCEQVFRKVR
              130     

>>XP_016875491 (OMIM: 611866) PREDICTED: retinol-binding  (126 aa)
 initn: 433 init1: 417 opt: 417  Z-score: 579.4  bits: 112.8 E(85289): 1.6e-25
Smith-Waterman score: 417; 56.0% identity (81.7% similar) in 109 aa overlap (25-133:16-124)

               10        20        30        40        50        60
pF1KB6 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTFRN
                               ::..:.::::. :   : :...:... ..: :::::
XP_016          MMNQAQWILKPGTMADISLAVRKIALLLKPDKEIEHQGNHMTVRTLSTFRN
                        10        20        30        40        50 

               70        80        90       100       110       120
pF1KB6 YDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGEKENRGWKQWIEGDKLYLEL
       : :.: :::::.:  .:.:.:. ...:::: . ::::::::  ::::..:.::. :::::
XP_016 YTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVCVQKGEVPNRGWRHWLEGEMLYLEL
              60        70        80        90       100       110 

              130     
pF1KB6 TCGDQVCRQVFKKK 
       :  : ::.:::.:  
XP_016 TARDAVCEQVFRKVR
             120      

>>NP_001316383 (OMIM: 611866) retinol-binding protein 5   (86 aa)
 initn: 363 init1: 347 opt: 354  Z-score: 496.0  bits: 96.9 E(85289): 6.9e-21
Smith-Waterman score: 354; 61.7% identity (82.7% similar) in 81 aa overlap (53-133:4-84)

             30        40        50        60        70        80  
pF1KB6 ALDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTFRNYDVDFTVGVEFDEYTKSLDNRH
                                     .: :::::: :.: :::::.:  .:.:.:.
NP_001                            MTVRTLSTFRNYTVQFDVGVEFEEDLRSVDGRK
                                          10        20        30   

             90       100       110       120       130     
pF1KB6 VKALVTWEGDVLVCVQKGEKENRGWKQWIEGDKLYLELTCGDQVCRQVFKKK 
        ...:::: . ::::::::  ::::..:.::. ::::::  : ::.:::.:  
NP_001 CQTIVTWEEEHLVCVQKGEVPNRGWRHWLEGEMLYLELTARDAVCEQVFRKVR
            40        50        60        70        80      

>>NP_004093 (OMIM: 134651) fatty acid-binding protein, h  (133 aa)
 initn: 306 init1: 229 opt: 330  Z-score: 460.4  bits: 90.9 E(85289): 6.6e-19
Smith-Waterman score: 330; 42.6% identity (71.3% similar) in 129 aa overlap (7-134:7-132)

               10        20        30        40        50        60
pF1KB6 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTFRN
             :::.. ...::. :::.: . ::::..:     : .:...:: .  :: :::.:
NP_004 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN
               10        20        30        40        50        60

               70        80        90       100        110         
pF1KB6 YDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGE-KENRGWKQWIEGDKLYLE
        ...: .:::::: :   :.:.::..:: .:  :: .:: . .:.   .. :.: :: : 
NP_004 TEISFKLGVEFDETTA--DDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDG-KLILT
               70          80        90       100       110        

     120       130     
pF1KB6 LTCGDQVCRQVFKKK 
       :: :  :: ....:. 
NP_004 LTHGTAVCTRTYEKEA
       120       130   

>>NP_001437 (OMIM: 602965) fatty acid-binding protein, b  (132 aa)
 initn: 310 init1: 210 opt: 301  Z-score: 420.9  bits: 83.6 E(85289): 1e-16
Smith-Waterman score: 301; 38.1% identity (69.0% similar) in 126 aa overlap (8-133:8-131)

               10        20        30        40        50        60
pF1KB6 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTFRN
              ::.. ...::. ::::: . ::::...     : .:.:.::.   .: :::.:
NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 YDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGEKENRGWKQWIEGDKLYLEL
        ...: .: :::: :   :.:. :..:. .:: :: .:: . .. .. . :.  :. . :
NP_001 TEISFQLGEEFDETTA--DDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTL
               70          80        90       100       110        

              130    
pF1KB6 TCGDQVCRQVFKKK
       : :: :  . ..: 
NP_001 TFGDVVAVRHYEKA
      120       130  

>>NP_001433 (OMIM: 600434) fatty acid-binding protein, a  (132 aa)
 initn: 294 init1: 211 opt: 295  Z-score: 412.7  bits: 82.1 E(85289): 3e-16
Smith-Waterman score: 295; 39.4% identity (66.1% similar) in 127 aa overlap (7-133:7-131)

               10        20        30        40        50        60
pF1KB6 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTFRN
             :::.. :.:::. ::: . . :::::.:     . .:. .:: .  :. :::.:
NP_001 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 YDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGEKENRGWKQWIEGDKLYLEL
        ...: .: :::: :   :.:.::. .: .: ::: ::: . ..   :.  : ::: .: 
NP_001 TEISFILGQEFDEVTA--DDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVEC
               70          80        90       100       110        

              130    
pF1KB6 TCGDQVCRQVFKKK
       .    .  .:... 
NP_001 VMKGVTSTRVYERA
      120       130  

>>XP_011539309 (OMIM: 134651) PREDICTED: fatty acid-bind  (126 aa)
 initn: 281 init1: 229 opt: 291  Z-score: 407.6  bits: 81.0 E(85289): 5.8e-16
Smith-Waterman score: 291; 41.2% identity (71.1% similar) in 114 aa overlap (7-119:7-118)

               10        20        30        40        50        60
pF1KB6 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTFRN
             :::.. ...::. :::.: . ::::..:     : .:...:: .  :: :::.:
XP_011 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN
               10        20        30        40        50        60

               70        80        90       100        110         
pF1KB6 YDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGE-KENRGWKQWIEGDKLYLE
        ...: .:::::: :   :.:.::..:: .:  :: .:: . .:.   .. :.:  . .:
XP_011 TEISFKLGVEFDETTA--DDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILME
               70          80        90       100       110        

     120       130    
pF1KB6 LTCGDQVCRQVFKKK
                      
XP_011 KLQLRNVK       
      120             




134 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:52:35 2016 done: Sat Nov  5 13:52:36 2016
 Total Scan time:  4.100 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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