Result of FASTA (ccds) for pF1KB6720
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6720, 134 aa
  1>>>pF1KB6720 134 - 134 aa - 134 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7838+/-0.000795; mu= 13.5766+/- 0.048
 mean_var=55.5087+/-11.297, 0's: 0 Z-trim(106.0): 27  B-trim: 3 in 1/47
 Lambda= 0.172145
 statistics sampled from 8691 (8712) to 8691 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.648), E-opt: 0.2 (0.268), width:  16
 Scan time:  1.530

The best scores are:                                      opt bits E(32554)
CCDS3109.1 RBP2 gene_id:5948|Hs108|chr3            ( 134)  911 233.9 2.2e-62
CCDS109.1 RBP7 gene_id:116362|Hs108|chr1           ( 134)  556 145.8 7.7e-36
CCDS3110.2 RBP1 gene_id:5947|Hs108|chr3            ( 197)  495 130.7 3.9e-31
CCDS8574.1 RBP5 gene_id:83758|Hs108|chr12          ( 135)  460 121.9 1.2e-28
CCDS342.1 FABP3 gene_id:2170|Hs108|chr1            ( 133)  330 89.6 6.1e-19
CCDS5127.1 FABP7 gene_id:2173|Hs108|chr6           ( 132)  301 82.4 8.9e-17
CCDS6230.1 FABP4 gene_id:2167|Hs108|chr8           ( 132)  295 80.9 2.5e-16
CCDS1152.1 CRABP2 gene_id:1382|Hs108|chr1          ( 138)  286 78.7 1.2e-15
CCDS10301.1 CRABP1 gene_id:1381|Hs108|chr15        ( 137)  282 77.7 2.4e-15
CCDS83121.1 FABP7 gene_id:2173|Hs108|chr6          ( 166)  272 75.3 1.6e-14
CCDS6229.1 PMP2 gene_id:5375|Hs108|chr8            ( 132)  268 74.2 2.6e-14
CCDS46926.1 RBP1 gene_id:5947|Hs108|chr3           ( 157)  262 72.8 8.4e-14
CCDS46925.1 RBP1 gene_id:5947|Hs108|chr3           ( 153)  259 72.0 1.4e-13
CCDS47882.1 FABP12 gene_id:646486|Hs108|chr8       ( 140)  233 65.6 1.1e-11


>>CCDS3109.1 RBP2 gene_id:5948|Hs108|chr3                 (134 aa)
 initn: 911 init1: 911 opt: 911  Z-score: 1233.4  bits: 233.9 E(32554): 2.2e-62
Smith-Waterman score: 911; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)

               10        20        30        40        50        60
pF1KB6 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTFRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTFRN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 YDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGEKENRGWKQWIEGDKLYLEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 YDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGEKENRGWKQWIEGDKLYLEL
               70        80        90       100       110       120

              130    
pF1KB6 TCGDQVCRQVFKKK
       ::::::::::::::
CCDS31 TCGDQVCRQVFKKK
              130    

>>CCDS109.1 RBP7 gene_id:116362|Hs108|chr1                (134 aa)
 initn: 558 init1: 545 opt: 556  Z-score: 756.9  bits: 145.8 E(32554): 7.7e-36
Smith-Waterman score: 556; 59.4% identity (80.5% similar) in 133 aa overlap (1-133:1-133)

               10        20        30        40        50        60
pF1KB6 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTFRN
       :  : .::: . :..:::::: :: :::::::::  :   :::.:.::.:  .:.:..::
CCDS10 MPADLSGTWTLLSSDNFEGYMLALGIDFATRKIAKLLKPQKVIEQNGDSFTIHTNSSLRN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 YDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGEKENRGWKQWIEGDKLYLEL
       : : : :: :::: ...::::. :.:: :..: :.:.:::::.:::: .:::::::.::.
CCDS10 YFVKFKVGEEFDEDNRGLDNRKCKSLVIWDNDRLTCIQKGEKKNRGWTHWIEGDKLHLEM
               70        80        90       100       110       120

              130    
pF1KB6 TCGDQVCRQVFKKK
        :  :::.:.:.. 
CCDS10 FCEGQVCKQTFQRA
              130    

>>CCDS3110.2 RBP1 gene_id:5947|Hs108|chr3                 (197 aa)
 initn: 464 init1: 464 opt: 495  Z-score: 672.5  bits: 130.7 E(32554): 3.9e-31
Smith-Waterman score: 495; 55.6% identity (72.9% similar) in 133 aa overlap (1-133:63-195)

                                             10        20        30
pF1KB6                               MTRDQNGTWEMESNENFEGYMKALDIDFAT
                                     :  : .: :.:  ::::: :..:::.. : 
CCDS31 HHPRSTGSRCPGSLQPSRPLVANWLQSLPEMPVDFTGYWKMLVNENFEEYLRALDVNVAL
             40        50        60        70        80        90  

               40        50        60        70        80        90
pF1KB6 RKIAVRLTQTKVIDQDGDNFKTKTTSTFRNYDVDFTVGVEFDEYTKSLDNRHVKALVTWE
       ::::  :   : : ::::..  .: :::::: .:: :: ::.:   ..:.:.  . :.:.
CCDS31 RKIANLLKPDKEIVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMTTVSWD
            100       110       120       130       140       150  

              100       110       120       130     
pF1KB6 GDVLVCVQKGEKENRGWKQWIEGDKLYLELTCGDQVCRQVFKKK 
       :: : ::::::::.::: ::::::.:.::.     ::.:::::  
CCDS31 GDKLQCVQKGEKEGRGWTQWIEGDELHLEMRVEGVVCKQVFKKVQ
            160       170       180       190       

>>CCDS8574.1 RBP5 gene_id:83758|Hs108|chr12               (135 aa)
 initn: 437 init1: 421 opt: 460  Z-score: 628.0  bits: 121.9 E(32554): 1.2e-28
Smith-Waterman score: 460; 51.1% identity (80.5% similar) in 133 aa overlap (1-133:1-133)

               10        20        30        40        50        60
pF1KB6 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTFRN
       :  . .: ... :..:.: :..::.:..:.::::. :   : :...:... ..: :::::
CCDS85 MPPNLTGYYRFVSQKNMEDYLQALNISLAVRKIALLLKPDKEIEHQGNHMTVRTLSTFRN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 YDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGEKENRGWKQWIEGDKLYLEL
       : :.: :::::.:  .:.:.:. ...:::: . ::::::::  ::::..:.::. :::::
CCDS85 YTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVCVQKGEVPNRGWRHWLEGEMLYLEL
               70        80        90       100       110       120

              130     
pF1KB6 TCGDQVCRQVFKKK 
       :  : ::.:::.:  
CCDS85 TARDAVCEQVFRKVR
              130     

>>CCDS342.1 FABP3 gene_id:2170|Hs108|chr1                 (133 aa)
 initn: 306 init1: 229 opt: 330  Z-score: 453.6  bits: 89.6 E(32554): 6.1e-19
Smith-Waterman score: 330; 42.6% identity (71.3% similar) in 129 aa overlap (7-134:7-132)

               10        20        30        40        50        60
pF1KB6 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTFRN
             :::.. ...::. :::.: . ::::..:     : .:...:: .  :: :::.:
CCDS34 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN
               10        20        30        40        50        60

               70        80        90       100        110         
pF1KB6 YDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGE-KENRGWKQWIEGDKLYLE
        ...: .:::::: :   :.:.::..:: .:  :: .:: . .:.   .. :.: :: : 
CCDS34 TEISFKLGVEFDETTA--DDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDG-KLILT
               70          80        90       100       110        

     120       130     
pF1KB6 LTCGDQVCRQVFKKK 
       :: :  :: ....:. 
CCDS34 LTHGTAVCTRTYEKEA
       120       130   

>>CCDS5127.1 FABP7 gene_id:2173|Hs108|chr6                (132 aa)
 initn: 310 init1: 210 opt: 301  Z-score: 414.7  bits: 82.4 E(32554): 8.9e-17
Smith-Waterman score: 301; 38.1% identity (69.0% similar) in 126 aa overlap (8-133:8-131)

               10        20        30        40        50        60
pF1KB6 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTFRN
              ::.. ...::. ::::: . ::::...     : .:.:.::.   .: :::.:
CCDS51 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 YDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGEKENRGWKQWIEGDKLYLEL
        ...: .: :::: :   :.:. :..:. .:: :: .:: . .. .. . :.  :. . :
CCDS51 TEISFQLGEEFDETTA--DDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTL
               70          80        90       100       110        

              130    
pF1KB6 TCGDQVCRQVFKKK
       : :: :  . ..: 
CCDS51 TFGDVVAVRHYEKA
      120       130  

>>CCDS6230.1 FABP4 gene_id:2167|Hs108|chr8                (132 aa)
 initn: 294 init1: 211 opt: 295  Z-score: 406.7  bits: 80.9 E(32554): 2.5e-16
Smith-Waterman score: 295; 39.4% identity (66.1% similar) in 127 aa overlap (7-133:7-131)

               10        20        30        40        50        60
pF1KB6 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTFRN
             :::.. :.:::. ::: . . :::::.:     . .:. .:: .  :. :::.:
CCDS62 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 YDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGEKENRGWKQWIEGDKLYLEL
        ...: .: :::: :   :.:.::. .: .: ::: ::: . ..   :.  : ::: .: 
CCDS62 TEISFILGQEFDEVTA--DDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVEC
               70          80        90       100       110        

              130    
pF1KB6 TCGDQVCRQVFKKK
       .    .  .:... 
CCDS62 VMKGVTSTRVYERA
      120       130  

>>CCDS1152.1 CRABP2 gene_id:1382|Hs108|chr1               (138 aa)
 initn: 198 init1:  97 opt: 286  Z-score: 394.3  bits: 78.7 E(32554): 1.2e-15
Smith-Waterman score: 286; 36.8% identity (66.2% similar) in 136 aa overlap (6-134:5-138)

               10        20        30        40          50        
pF1KB6 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVID--QDGDNFKTKTTSTF
            .:.:..  .::::  .:.: ..   :::::  ..  ...  :.::.:  ::..: 
CCDS11  MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTV
                10        20        30        40        50         

       60        70        80        90           100       110    
pF1KB6 RNYDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDV-LVCVQK---GEKENRGWKQWIEGD
       :. ...: :: ::.: :  .:.:  :.:: ::..  .:: ::   ::  . .: . . .:
CCDS11 RTTEINFKVGEEFEEQT--VDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTND
      60        70          80        90       100       110       

           120       130    
pF1KB6 -KLYLELTCGDQVCRQVFKKK
        .: : .:  : :: .:. ..
CCDS11 GELILTMTADDVVCTRVYVRE
       120       130        

>>CCDS10301.1 CRABP1 gene_id:1381|Hs108|chr15             (137 aa)
 initn: 139 init1: 139 opt: 282  Z-score: 389.0  bits: 77.7 E(32554): 2.4e-15
Smith-Waterman score: 282; 35.8% identity (67.2% similar) in 134 aa overlap (7-134:6-137)

               10        20        30         40         50        
pF1KB6 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRL-TQTKV-IDQDGDNFKTKTTSTF
             :::.:.:.:::.  .::: ..   ::.::   .. .: : ::::.:  ::..: 
CCDS10  MPNFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTV
                10        20        30        40        50         

       60        70        80        90           100       110    
pF1KB6 RNYDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLV-CVQ---KGEKENRGWKQWIEGD
       :. ...: ::  :.: :  .:.:. ..:.:::..  . :.:   .:.  .  : . . .:
CCDS10 RTTEINFKVGEGFEEET--VDGRKCRSLATWENENKIHCTQTLLEGDGPKTYWTRELAND
      60        70          80        90       100       110       

          120       130    
pF1KB6 KLYLELTCGDQVCRQVFKKK
       .: : .   : :: ... ..
CCDS10 ELILTFGADDVVCTRIYVRE
       120       130       

>>CCDS83121.1 FABP7 gene_id:2173|Hs108|chr6               (166 aa)
 initn: 292 init1: 210 opt: 272  Z-score: 374.3  bits: 75.3 E(32554): 1.6e-14
Smith-Waterman score: 272; 37.8% identity (70.3% similar) in 111 aa overlap (8-118:8-116)

               10        20        30        40        50        60
pF1KB6 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTFRN
              ::.. ...::. ::::: . ::::...     : .:.:.::.   .: :::.:
CCDS83 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 YDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGEKENRGWKQWIEGDKLYLEL
        ...: .: :::: :   :.:. :..:. .:: :: .:: . .. .. . :.  :. .  
CCDS83 TEISFQLGEEFDETTA--DDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMVS
               70          80        90       100       110        

              130                                      
pF1KB6 TCGDQVCRQVFKKK                                  
                                                       
CCDS83 NDNSPFFLVFFSSPHTSHLLPSSSLLLPFFLLPSFFNNTSLARFFNYM
      120       130       140       150       160      




134 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:52:35 2016 done: Sat Nov  5 13:52:35 2016
 Total Scan time:  1.530 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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