FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0505, 251 aa
  1>>>pF1KE0505 251 - 251 aa - 251 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3154+/-0.000795; mu= 15.4127+/- 0.048
 mean_var=79.2309+/-15.094, 0's: 0 Z-trim(109.3): 16  B-trim: 0 in 0/52
 Lambda= 0.144088
 statistics sampled from 10817 (10820) to 10817 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.332), width:  16
 Scan time:  2.040

The best scores are:                                      opt bits E(32554)
CCDS33639.1 C22orf42 gene_id:150297|Hs108|chr22    ( 251) 1688 359.9 9.1e-100


>>CCDS33639.1 C22orf42 gene_id:150297|Hs108|chr22         (251 aa)
 initn: 1688 init1: 1688 opt: 1688  Z-score: 1904.7  bits: 359.9 E(32554): 9.1e-100
Smith-Waterman score: 1688; 100.0% identity (100.0% similar) in 251 aa overlap (1-251:1-251)

               10        20        30        40        50        60
pF1KE0 MGSKLTCCLGPSGGLNCDCCRPDVGPCHECEIPETVAATAPASTTAKPAKLDLKAKKAQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MGSKLTCCLGPSGGLNCDCCRPDVGPCHECEIPETVAATAPASTTAKPAKLDLKAKKAQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 MQYLSLPKTPKMLKMSKGLDARSKRWLKIIWRRHGIWPLENIGPTEDVQASAHGGVEENM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MQYLSLPKTPKMLKMSKGLDARSKRWLKIIWRRHGIWPLENIGPTEDVQASAHGGVEENM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TSDIEIPEAKHDHRPTEDVQVSAHGGVEENITSDIEISEAKHDHHLVEDLSESLSVCLED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TSDIEIPEAKHDHRPTEDVQVSAHGGVEENITSDIEISEAKHDHHLVEDLSESLSVCLED
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 FMTSDLSESLSVSLEDFMTSGLSESLSVSLEDLMTPEMAKERYEDYLCWVKMARSRLNEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FMTSDLSESLSVSLEDFMTSGLSESLSVSLEDLMTPEMAKERYEDYLCWVKMARSRLNEP
              190       200       210       220       230       240

              250 
pF1KE0 ISSQVLGLLRL
       :::::::::::
CCDS33 ISSQVLGLLRL
              250 




251 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 12:02:51 2016 done: Sat Nov  5 12:02:51 2016
 Total Scan time:  2.040 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]