Result of FASTA (ccds) for pF1KB0413
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0413, 467 aa
  1>>>pF1KB0413 467 - 467 aa - 467 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2544+/-0.000725; mu= 18.6898+/- 0.044
 mean_var=82.1255+/-15.994, 0's: 0 Z-trim(111.3): 39  B-trim: 57 in 2/49
 Lambda= 0.141526
 statistics sampled from 12269 (12307) to 12269 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.378), width:  16
 Scan time:  3.270

The best scores are:                                      opt bits E(32554)
CCDS343.1 TINAGL1 gene_id:64129|Hs108|chr1         ( 467) 3459 715.8 2.3e-206
CCDS72745.1 TINAGL1 gene_id:64129|Hs108|chr1       ( 362) 2638 548.1 5.6e-156
CCDS55586.1 TINAGL1 gene_id:64129|Hs108|chr1       ( 436) 2245 467.9 9.2e-132
CCDS4955.1 TINAG gene_id:27283|Hs108|chr6          ( 476) 1525 320.9 1.8e-87
CCDS5986.1 CTSB gene_id:1508|Hs108|chr8            ( 339)  412 93.6 3.5e-19
CCDS8282.1 CTSC gene_id:1075|Hs108|chr11           ( 463)  277 66.1 8.8e-11


>>CCDS343.1 TINAGL1 gene_id:64129|Hs108|chr1              (467 aa)
 initn: 3459 init1: 3459 opt: 3459  Z-score: 3818.2  bits: 715.8 E(32554): 2.3e-206
Smith-Waterman score: 3459; 100.0% identity (100.0% similar) in 467 aa overlap (1-467:1-467)

               10        20        30        40        50        60
pF1KB0 MWRCPLGLLLLLPLAGHLALGAQQGRGRRELAPGLHLRGIRDAGGRYCQEQDLCCRGRAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MWRCPLGLLLLLPLAGHLALGAQQGRGRRELAPGLHLRGIRDAGGRYCQEQDLCCRGRAD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 DCALPYLGAICYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQGCMHGGRIYPVLGTYWD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DCALPYLGAICYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQGCMHGGRIYPVLGTYWD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 NCNRCTCQENRQWQCDQEPCLVDPDMIKAINQGNYGWQAGNHSAFWGMTLDEGIRYRLGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NCNRCTCQENRQWQCDQEPCLVDPDMIKAINQGNYGWQAGNHSAFWGMTLDEGIRYRLGT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 IRPSSSVMNMHEIYTVLNPGEVLPTAFEASEKWPNLIHEPLDQGNCAGSWAFSTAAVASD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 IRPSSSVMNMHEIYTVLNPGEVLPTAFEASEKWPNLIHEPLDQGNCAGSWAFSTAAVASD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 RVSIHSLGHMTPVLSPQNLLSCDTHQQQGCRGGRLDGAWWFLRRRGVVSDHCYPFSGRER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RVSIHSLGHMTPVLSPQNLLSCDTHQQQGCRGGRLDGAWWFLRRRGVVSDHCYPFSGRER
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 DEAGPAPPCMMHSRAMGRGKRQATAHCPNSYVNNNDIYQVTPVYRLGSNDKEIMKELMEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DEAGPAPPCMMHSRAMGRGKRQATAHCPNSYVNNNDIYQVTPVYRLGSNDKEIMKELMEN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB0 GPVQALMEVHEDFFLYKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GPVQALMEVHEDFFLYKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKY
              370       380       390       400       410       420

              430       440       450       460       
pF1KB0 WTAANSWGPAWGERGHFRIVRGVNECDIESFVLGVWGRVGMEDMGHH
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 WTAANSWGPAWGERGHFRIVRGVNECDIESFVLGVWGRVGMEDMGHH
              430       440       450       460       

>>CCDS72745.1 TINAGL1 gene_id:64129|Hs108|chr1            (362 aa)
 initn: 2638 init1: 2638 opt: 2638  Z-score: 2913.8  bits: 548.1 E(32554): 5.6e-156
Smith-Waterman score: 2638; 100.0% identity (100.0% similar) in 362 aa overlap (106-467:1-362)

          80        90       100       110       120       130     
pF1KB0 FCNRTVSDCCPDFWDFCLGVPPPFPPIQGCMHGGRIYPVLGTYWDNCNRCTCQENRQWQC
                                     ::::::::::::::::::::::::::::::
CCDS72                               MHGGRIYPVLGTYWDNCNRCTCQENRQWQC
                                             10        20        30

         140       150       160       170       180       190     
pF1KB0 DQEPCLVDPDMIKAINQGNYGWQAGNHSAFWGMTLDEGIRYRLGTIRPSSSVMNMHEIYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 DQEPCLVDPDMIKAINQGNYGWQAGNHSAFWGMTLDEGIRYRLGTIRPSSSVMNMHEIYT
               40        50        60        70        80        90

         200       210       220       230       240       250     
pF1KB0 VLNPGEVLPTAFEASEKWPNLIHEPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 VLNPGEVLPTAFEASEKWPNLIHEPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLS
              100       110       120       130       140       150

         260       270       280       290       300       310     
pF1KB0 PQNLLSCDTHQQQGCRGGRLDGAWWFLRRRGVVSDHCYPFSGRERDEAGPAPPCMMHSRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 PQNLLSCDTHQQQGCRGGRLDGAWWFLRRRGVVSDHCYPFSGRERDEAGPAPPCMMHSRA
              160       170       180       190       200       210

         320       330       340       350       360       370     
pF1KB0 MGRGKRQATAHCPNSYVNNNDIYQVTPVYRLGSNDKEIMKELMENGPVQALMEVHEDFFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MGRGKRQATAHCPNSYVNNNDIYQVTPVYRLGSNDKEIMKELMENGPVQALMEVHEDFFL
              220       230       240       250       260       270

         380       390       400       410       420       430     
pF1KB0 YKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 YKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERG
              280       290       300       310       320       330

         440       450       460       
pF1KB0 HFRIVRGVNECDIESFVLGVWGRVGMEDMGHH
       ::::::::::::::::::::::::::::::::
CCDS72 HFRIVRGVNECDIESFVLGVWGRVGMEDMGHH
              340       350       360  

>>CCDS55586.1 TINAGL1 gene_id:64129|Hs108|chr1            (436 aa)
 initn: 2237 init1: 2237 opt: 2245  Z-score: 2479.0  bits: 467.9 E(32554): 9.2e-132
Smith-Waterman score: 3147; 93.4% identity (93.4% similar) in 467 aa overlap (1-467:1-436)

               10        20        30        40        50        60
pF1KB0 MWRCPLGLLLLLPLAGHLALGAQQGRGRRELAPGLHLRGIRDAGGRYCQEQDLCCRGRAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MWRCPLGLLLLLPLAGHLALGAQQGRGRRELAPGLHLRGIRDAGGRYCQEQDLCCRGRAD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 DCALPYLGAICYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQGCMHGGRIYPVLGTYWD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DCALPYLGAICYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQGCMHGGRIYPVLGTYWD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 NCNRCTCQENRQWQCDQEPCLVDPDMIKAINQGNYGWQAGNHSAFWGMTLDEGIRYRLGT
       :::::                               ::::::::::::::::::::::::
CCDS55 NCNRC-------------------------------WQAGNHSAFWGMTLDEGIRYRLGT
                                             130       140         

              190       200       210       220       230       240
pF1KB0 IRPSSSVMNMHEIYTVLNPGEVLPTAFEASEKWPNLIHEPLDQGNCAGSWAFSTAAVASD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IRPSSSVMNMHEIYTVLNPGEVLPTAFEASEKWPNLIHEPLDQGNCAGSWAFSTAAVASD
     150       160       170       180       190       200         

              250       260       270       280       290       300
pF1KB0 RVSIHSLGHMTPVLSPQNLLSCDTHQQQGCRGGRLDGAWWFLRRRGVVSDHCYPFSGRER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RVSIHSLGHMTPVLSPQNLLSCDTHQQQGCRGGRLDGAWWFLRRRGVVSDHCYPFSGRER
     210       220       230       240       250       260         

              310       320       330       340       350       360
pF1KB0 DEAGPAPPCMMHSRAMGRGKRQATAHCPNSYVNNNDIYQVTPVYRLGSNDKEIMKELMEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DEAGPAPPCMMHSRAMGRGKRQATAHCPNSYVNNNDIYQVTPVYRLGSNDKEIMKELMEN
     270       280       290       300       310       320         

              370       380       390       400       410       420
pF1KB0 GPVQALMEVHEDFFLYKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GPVQALMEVHEDFFLYKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKY
     330       340       350       360       370       380         

              430       440       450       460       
pF1KB0 WTAANSWGPAWGERGHFRIVRGVNECDIESFVLGVWGRVGMEDMGHH
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 WTAANSWGPAWGERGHFRIVRGVNECDIESFVLGVWGRVGMEDMGHH
     390       400       410       420       430      

>>CCDS4955.1 TINAG gene_id:27283|Hs108|chr6               (476 aa)
 initn: 1451 init1: 664 opt: 1525  Z-score: 1684.0  bits: 320.9 E(32554): 1.8e-87
Smith-Waterman score: 1525; 49.4% identity (73.5% similar) in 427 aa overlap (45-463:54-474)

           20        30        40        50        60          70  
pF1KB0 AGHLALGAQQGRGRRELAPGLHLRGIRDAGGRYCQEQDLCCRGRADDCALPYLGA--ICY
                                     :.::..   ::. : : :.  . .:  .::
CCDS49 LSQREVDLEAYFTRNHTVLQGTRFKRAIFQGQYCRNFG-CCEDRDDGCVTEFYAANALCY
            30        40        50        60         70        80  

             80        90             100       110       120      
pF1KB0 CDLFCNRTVSDCCPDFWDFCLGV---PP---PFPPIQGCMHGGRIYPVLGTYWDNCNRCT
       :: ::.:  ::::::. .::      ::   :. : .::.. :. :   ..  .::: ::
CCDS49 CDKFCDRENSDCCPDYKSFCREEKEWPPHTQPWYP-EGCFKDGQHYEEGSVIKENCNSCT
             90       100       110        120       130       140 

        130       140       150       160       170       180      
pF1KB0 CQENRQWQCDQEPCLVDPDMIKAINQGNYGWQAGNHSAFWGMTLDEGIRYRLGTIRPSSS
       :. ..::.:.:. :::  ..:. .:.:.::: : :.: ::::::..:...::::. ::  
CCDS49 CS-GQQWKCSQHVCLVRSELIEQVNKGDYGWTAQNYSQFWGMTLEDGFKFRLGTLPPSPM
              150       160       170       180       190       200

        190       200       210       220       230       240      
pF1KB0 VMNMHEIYTVLNPGEVLPTAFEASEKWPNLIHEPLDQGNCAGSWAFSTAAVASDRVSIHS
       ...:.:. . :     ::  : :: :::.  : :::: :::.:::::::.::.::..:.:
CCDS49 LLSMNEMTASLPATTDLPEFFVASYKWPGWTHGPLDQKNCAASWAFSTASVAADRIAIQS
              210       220       230       240       250       260

        250       260       270       280       290       300      
pF1KB0 LGHMTPVLSPQNLLSCDTHQQQGCRGGRLDGAWWFLRRRGVVSDHCYPFSGRERDEAGPA
        :..:  ::::::.:: .....:: .: .: :::.::.::.::  :::.    .:. .  
CCDS49 KGRYTANLSPQNLISCCAKNRHGCNSGSIDRAWWYLRKRGLVSHACYPL---FKDQNATN
              270       280       290       300          310       

        310       320       330       340       350       360      
pF1KB0 PPCMMHSRAMGRGKRQATAHCPNSYVNNNDIYQVTPVYRLGSNDKEIMKELMENGPVQAL
         : : ::. :::::.::  :::.  ..: ::: .: ::..::. :::::.:.::::::.
CCDS49 NGCAMASRSDGRGKRHATKPCPNNVEKSNRIYQCSPPYRVSSNETEIMKEIMQNGPVQAI
       320       330       340       350       360       370       

        370       380       390       400       410       420      
pF1KB0 MEVHEDFFLYKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANS
       :.:.:::: :: ::: :.  .  . :.::.  ::.::.::::     .:.  :.: ::::
CCDS49 MQVREDFFHYKTGIYRHVTSTNKESEKYRKLQTHAVKLTGWGTLRGAQGQKEKFWIAANS
       380       390       400       410       420       430       

        430       440       450       460       
pF1KB0 WGPAWGERGHFRIVRGVNECDIESFVLGVWGRVGMEDMGHH
       :: .::: :.:::.::::: :::......::..   :    
CCDS49 WGKSWGENGYFRILRGVNESDIEKLIIAAWGQLTSSDEP  
       440       450       460       470        

>>CCDS5986.1 CTSB gene_id:1508|Hs108|chr8                 (339 aa)
 initn: 510 init1: 144 opt: 412  Z-score: 457.8  bits: 93.6 E(32554): 3.5e-19
Smith-Waterman score: 583; 33.0% identity (59.3% similar) in 327 aa overlap (145-453:29-326)

          120       130       140       150       160       170    
pF1KB0 LGTYWDNCNRCTCQENRQWQCDQEPCLVDPDMIKAINQGNYGWQAGNHSAFWGMTLDEGI
                                     .... .:. :  ::::..  :... ..   
CCDS59   MWQLWASLCCLLVLANARSRPSFHPLSDELVNYVNKRNTTWQAGHN--FYNVDMSYLK
                 10        20        30        40          50      

             180       190       200       210         220         
pF1KB0 RY---RLGTIRPSSSVMNMHEIYTVLNPGEVLPTAFEASEKWPN--LIHEPLDQGNCAGS
       :     ::  .: . ::  ...         ::..:.: :.::.   :.:  :::.:.. 
CCDS59 RLCGTFLGGPKPPQRVMFTEDLK--------LPASFDAREQWPQCPTIKEIRDQGSCGSC
         60        70                80        90       100        

     230       240       250       260        270       280        
pF1KB0 WAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSC-DTHQQQGCRGGRLDGAWWFLRRRGVV
       :::... . :::. ::. .:..  .: ..::.:  .   .:: ::    :: :  :.:.:
CCDS59 WAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLV
      110       120       130       140       150       160        

           290           300       310       320        330        
pF1KB0 S-----DH--CYPFS--GRERDEAGPAPPCMMHSRAMGRGKRQATAH-CPNSY--VNNND
       :     .:  : :.:    :.   :  :::       :.:     .. :  .:  . ..:
CCDS59 SGGLYESHVGCRPYSIPPCEHHVNGSRPPCT------GEGDTPKCSKICEPGYSPTYKQD
      170       180       190             200       210       220  

        340       350       360       370       380       390      
pF1KB0 IYQVTPVYRLGSNDKEIMKELMENGPVQALMEVHEDFFLYKGGIYSHTPVSLGRPERYRR
        .     : .....:.:: :...::::.. . :. ::.:::.:.:.:.   .        
CCDS59 KHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEM--------
            230       240       250       260       270            

        400       410       420       430       440       450      
pF1KB0 HGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGHFRIVRGVNECDIESFVLGVW
        : :...: ::: :   .:    :: .::::.  ::. : :.:.:: ..: ::: :.   
CCDS59 MGGHAIRILGWGVE---NGT--PYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGI
          280          290         300       310       320         

        460       
pF1KB0 GRVGMEDMGHH
                  
CCDS59 PRTDQYWEKI 
     330          

>>CCDS8282.1 CTSC gene_id:1075|Hs108|chr11                (463 aa)
 initn: 395 init1: 161 opt: 277  Z-score: 307.0  bits: 66.1 E(32554): 8.8e-11
Smith-Waterman score: 460; 29.6% identity (58.2% similar) in 318 aa overlap (143-453:171-455)

            120       130       140       150       160       170  
pF1KB0 PVLGTYWDNCNRCTCQENRQWQCDQEPCLVDPDMIKAINQGNYGWQAGNHSAFWGMTLDE
                                     : ...::::  . .: : ..  .  .:: .
CCDS82 KVGTASENVYVNIAHLKNSQEKYSNRLYKYDHNFVKAINAIQKSWTATTYMEYETLTLGD
              150       160       170       180       190       200

                180       190       200       210        220       
pF1KB0 GIRYRLG----TIRPSSSVMNMHEIYTVLNPGEVLPTAFEASE-KWPNLIHEPLDQGNCA
        ::   :      ::. . .. .    .:.    :::...  . .  :..    .:..:.
CCDS82 MIRRSGGHSRKIPRPKPAPLTAEIQQKILH----LPTSWDWRNVHGINFVSPVRNQASCG
              210       220       230           240       250      

       230       240       250       260       270        280      
pF1KB0 GSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSCDTHQQQGCRGGR-LDGAWWFLRRRG
       . ..:.. ..   :. : . . .::.::::...:: ..  :::.::     :  . .  :
CCDS82 SCYSFASMGMLEARIRILTNNSQTPILSPQEVVSC-SQYAQGCEGGFPYLIAGKYAQDFG
        260       270       280       290        300       310     

        290       300       310       320       330       340      
pF1KB0 VVSDHCYPFSGRERDEAGPAPPCMMHSRAMGRGKRQATAHCPNSYVNNNDIYQVTPVYRL
       .: . :.:..: .        :: :.              :   :  ... . :   :  
CCDS82 LVEEACFPYTGTD-------SPCKMKE------------DCFRYY--SSEYHYVGGFY--
         320              330                   340         350    

        350        360       370       380       390       400     
pF1KB0 GSNDKEIMK-ELMENGPVQALMEVHEDFFLYKGGIYSHTPVSLGRPERYRRHGTHSVKIT
       :. .. .:: ::...::. . .::..::. :: ::: ::  .:  :    .  .:.: ..
CCDS82 GGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHT--GLRDPFNPFELTNHAVLLV
            360       370       380       390         400       410

         410       420       430       440       450       460     
pF1KB0 GWGEETLPDGRTLKYWTAANSWGPAWGERGHFRIVRGVNECDIESFVLGVWGRVGMEDMG
       :.: ..   .  . :: . :::: .::: :.::: ::..:: :::...            
CCDS82 GYGTDS---ASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATPIPKL    
                 420       430       440       450       460       

         
pF1KB0 HH




467 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:52:01 2016 done: Sat Nov  5 11:52:02 2016
 Total Scan time:  3.270 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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