GENSCAN 1.0	Date run:  5-Nov-116	Time: 11:27:04

Sequence gi568815596r:20518990_20745508 : 226519 bp : 48.32% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +    827    982  156  0  0   64   93    49 0.425   2.98
 1.02 Term +   6615   6775  161  1  2  114   49    67 0.617   3.50
 1.03 PlyA +   7535   7540    6                              -0.45

 2.13 PlyA -  10427  10422    6                               1.05
 2.12 Term -  10972  10478  495  1  0   33   42   258 0.078  10.27
 2.11 Intr -  19722  19617  106  2  1   70   57    73 0.099   2.62
 2.10 Intr -  20574  20420  155  0  2   88   61    36 0.104  -0.23
 2.09 Intr -  30422  30344   79  1  1   68   86    54 0.096   2.75
 2.08 Intr -  34956  34891   66  2  0   79  116    21 0.135   2.02
 2.07 Intr -  40144  40043  102  0  0   45   76    71 0.338   0.89
 2.06 Intr -  41404  41350   55  2  1   94   78    31 0.445   0.74
 2.05 Intr -  44847  44686  162  1  0   33   93   137 0.366   8.65
 2.04 Intr -  49809  49734   76  0  1   69  113    59 0.541   5.59
 2.03 Intr -  56203  56132   72  1  0   24   84    74 0.267   0.20
 2.02 Intr -  58259  58029  231  2  0   73   99    27 0.068   0.27
 2.01 Init -  71560  71483   78  1  0   41   60   101 0.061   3.67
 2.00 Prom -  77655  77616   40                              -4.56

 3.03 PlyA -  78746  78741    6                               1.05
 3.02 Term -  87704  87501  204  2  0   46   47   223 0.969  11.37
 3.01 Init -  92780  92700   81  2  0   75   84     8 0.403   0.07
 3.00 Prom -  93169  93130   40                              -1.56

 4.11 PlyA -  93331  93326    6                               1.05
 4.10 Term - 100256  99998  259  1  1   80   46   315 0.889  21.52
 4.09 Intr - 105042 104907  136  1  1  116   81    80 0.961   9.73
 4.08 Intr - 105903 105743  161  2  2   76  103   286 0.999  28.53
 4.07 Intr - 119663 119447  217  0  1  117   12   216 0.096  14.46
 4.06 Intr - 122191 121984  208  1  1   99   48   287 0.972  24.45
 4.05 Intr - 122711 122605  107  0  2   49   73    62 0.542   0.73
 4.04 Intr - 123342 123179  164  2  2   94   70    55 0.461   3.92
 4.03 Intr - 123764 123715   50  2  2   78   31    51 0.267  -4.12
 4.02 Intr - 126516 126351  166  2  1  130   85   290 0.999  32.86
 4.01 Init - 128600 128497  104  2  2   82   97    82 0.859   6.53
 4.00 Prom - 138239 138200   40                              -4.06

 5.00 Prom + 139116 139155   40                              -5.36
 5.01 Init + 148251 148759  509  2  2   67   59   505 0.638  37.93
 5.02 Intr + 148897 149039  143  1  2   97   65     7 0.547  -0.70
 5.03 Intr + 151475 152432  958  0  1  112   74  1140 0.406 105.14
 5.04 Intr + 152721 152823  103  0  1   54   30    87 0.233  -0.32
 5.05 Term + 161753 161836   84  1  0   70   49    87 0.489   0.65
 5.06 PlyA + 162335 162340    6                               1.05

 6.04 PlyA - 162721 162716    6                               1.05
 6.03 Term - 168105 167914  192  0  0   92   32   187 0.777  10.92
 6.02 Intr - 183214 183197   18  1  0  126   61    35 0.036   1.41
 6.01 Init - 186508 186443   66  1  0   73  111     0 0.322   1.87
 6.00 Prom - 191594 191555   40                              -2.56

 7.00 Prom + 194847 194886   40                              -5.46
 7.01 Init + 194940 195961 1022  2  2   49   72   378 0.118  25.48
 7.02 Intr + 196275 196372   98  0  2   44   40   125 0.058   2.95
 7.03 Term + 214082 214095   14  0  2  131   48    12 0.137  -0.14
 7.04 PlyA + 215121 215126    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl -  10987  10478  510  1  0   82   42   238 0.887  14.76
S.002 Term - 119663 119428  236  0  2  117   54   202 0.894  16.18
S.003 Term + 142805 142920  116  0  2   92   52    70 0.822   2.53
S.004 Init - 177603 177528   76  0  1   81   89    54 0.891   5.99


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:20518990_20745508|GENSCAN_predicted_peptide_1|105_aa
XTVLEKPGPDPSPGISSSLHRDSECIRPLSHQRWKPKPMSSLPQGSEQAQQHWEAWEPGT
GKPLQGTARHCVAQQIWTQGLRGQPDTPLSMRAKEASESSVRGHS

>gi568815596r:20518990_20745508|GENSCAN_predicted_CDS_1|318_bp
ngcacagtcctggagaagccaggaccagacccctccccagggatcagcagcagcctccac
cgggactcggaatgtattaggccattatcccaccaaagatggaagcccaagcccatgtcc
tctcttccccagggttcagaacaagcccagcaacactgggaagcatgggagccagggaca
ggaaagcctctgcagggcacagccaggcactgtgtcgcccagcagatctggacacaaggg
ctgcggggccaaccagacactccactgagcatgcgggccaaggaggcctctgagagctca
gtgagaggacacagctag

>gi568815596r:20518990_20745508|GENSCAN_predicted_peptide_2|558_aa
MRLTEQQLEPEIAKGSEAVGLLRDEGLPGPPRYGNINSIVHEYQCVMPPVLNLPGTPSPS
LALGHPTSPSRPSDKPLFTLKTQLKRQFPCKFSHKFPCKYSSQDKTPEPIVPKVPEKSKQ
MPNNNMGVGTLRDKHYVLWFSILSPTQGLAYHALRGCRYRWSMNHTLKNKAVATNESPLD
STARVEGWASVKKPPVQEWQKNGLSTGSWAGVEEEAPLQIQYGESSYIDKEVGLEALQGP
LRSMQIQQTFLPAFTLLTMNLMASTRILKTTAHQFASLHKRCDLNPGADGAEVSMNDSSR
SGGLVGKPCPSICKIFDLTNIFCALPENDITKCALCPVTWSSWKHRMSLSLDTAPGLGRG
SLQPPSGKLPPWGQSLLPPVLPGVKDVLLLKGEQDLFRALWRSLSREVKEHVGTDQFGNK
YYYILQNKNWRGQTIQEKRIVEAANKKEVDYETGDIPTEWEAWIRRTRKTPPTMEEILKN
EKHREEIKIKSQDFYEKEKLLSKETSEELLPPPVQTQIKGRASAPYFGKEKPSVAPSSTG
KTFQPGSWMPRDGKSHNE

>gi568815596r:20518990_20745508|GENSCAN_predicted_CDS_2|1677_bp
atgaggttgacagagcaacagctggaaccagagatcgccaaggggagcgaggctgtgggg
ctgctccgggatgaggggctcccaggccctccccgatacggaaatattaactcaattgta
catgaatatcagtgtgtcatgcccccagtccttaatctccctggaaccccaagtccttca
cttgccctgggccaccccacatctccatctaggcccagtgacaagcccttgtttactctg
aaaacccaactcaaacggcaattcccttgtaaattctcccataaatttccttgtaaatac
tcttcccaggacaaaactccagagcccattgttccaaaagttccagagaaatccaaacaa
atgcccaacaacaatatgggggtgggaactcttcgagataagcactatgtcttatggttc
tccatcctgtccccaacacagggcctggcctatcacgctctcaggggatgtcgataccgc
tggtccatgaaccacactttgaaaaacaaagctgtagctaccaatgagagccctctggat
tctactgccagggtggaggggtgggcgagtgtgaagaagccccctgtgcaggaatggcaa
aagaatggacttagtactggatcctgggctggggtggaggaggaggcgccactgcagatc
cagtatggtgagagttcctacattgacaaagaagttggactagaggcactccagggccca
ctgagatccatgcagatacagcagactttccttcctgcattcacgctcctcacgatgaat
ctcatggcttccaccagaatcctcaaaaccacagcacatcagtttgctagcttgcacaaa
aggtgtgatctcaaccctggggctgatggcgcagaagtgagcatgaacgacagctcacgt
tctggtggccttgtgggaaagccctgcccctccatctgtaagatctttgatctcacaaac
atattctgtgcccttccagagaatgacatcaccaagtgtgccctctgtcctgtcacttgg
agctcctggaagcacagaatgtccctcagcctggacactgcccctggcctggggaggggg
tccctgcagccaccatcaggaaagctcccaccctggggacagtctctcctgcctcctgtt
cttcctggggtcaaagacgtgctcctgctcaagggtgagcaggatttgttccgcgccttg
tggagatcgctgtcaagggaagtgaaggagcacgtgggcacggaccaattcgggaacaaa
tactactacatcctgcagaacaagaactggagaggacaaactattcaagagaaaagaatt
gtagaagcagcaaataaaaaagaagtagactatgaaacaggggatattccaacagaatgg
gaagcttggattagaagaacaagaaagactccacctactatggaggaaatactaaagaat
gaaaaacacagagaagaaatcaaaataaaaagccaagatttttatgaaaaagaaaaactc
cttagtaaagagaccagtgaggaactcctgcctccaccagttcaaactcaaattaaaggc
cgtgcctctgctccatacttcggaaaggaaaaaccctcagtggctcccagcagcactggt
aaaacctttcagccaggatcctggatgccacgagatggcaagagccacaatgaatga

>gi568815596r:20518990_20745508|GENSCAN_predicted_peptide_3|94_aa
MGMGTYKTTGDPERGPGIEGPCVQGALRGCSVHRCSLSFAMPPKDKKKKKDAGKLARKDK
DPVSKSGDKAKKKKCSKDIVRDKPNNLVLFDKTT

>gi568815596r:20518990_20745508|GENSCAN_predicted_CDS_3|285_bp
atgggaatgggcacatacaaaaccactggagacccagaaaggggccctgggattgaggga
ccctgtgtccagggggccctgcgaggctgtagcgttcaccgctgctctctgagctttgca
atgccacccaaggacaagaagaagaagaaagacgctggaaagttggccaggaaagacaaa
gacccagtgagcaaatccggggacaaggccaaaaagaagaagtgctccaaagacatagtt
cgggacaagcccaataacttagttttgtttgacaaaactacctaa

>gi568815596r:20518990_20745508|GENSCAN_predicted_peptide_4|523_aa
MAGHPRPEHAFLTSSQAMLILIQGPHFENPTSRARRLQNAHTGLDLTVPQHQEVRGKMMS
GHVEYQILVVTRLAAFKSAKHRPEDVVQFLMPTQEALPEPLMDVGPGLGILGGVAGAKDV
CSRHTLHQGISPSPRASDARSPCTPALQWHTVGTVRAWEHKKRSCLTQGREQALEISVST
ACIGWPAEGHTGSRENEVSKKYSEIEEFYQKLSSRYAAASLPPLPRKVLFVGESDIRERR
AVFNEILRCVSKDAELAGSPELLEFLGTRSPGAAGLTSRDSSVLDGTDSQTGNDEEAFDF
FEEQDQVAEEGPPVQSLKGEDAEESLEEEEALDPLGIMRSKKPKKHPKVAVKAKPSPRLT
IFDEEVDPDEGLFGPGRKLSPQDPSEDVSSVDPLKLFDDPDLGGAIPLGDSLLLPAACES
GGPTPSLSHRDASKELFRVEEDLDQILNLGAEPKPKPQLKPKPPVAAKPVIPRKPAVPPK
AGPAEAVAGQQKPQEQIQAMDEMDILQYIQDHDTPAQAAPSLF

>gi568815596r:20518990_20745508|GENSCAN_predicted_CDS_4|1572_bp
atggctggccaccctaggcccgaacatgcctttcttacaagttcccaggcgatgctgatc
ctgatccagggaccacactttgagaaccccacatctagggcaaggcgacttcagaatgcc
cacactggcctcgacctgactgtgccccagcaccaggaggtacggggcaagatgatgtct
ggacacgtggagtaccagatcctggtggtgacccgtctggctgcgttcaagtcggccaag
cacaggcccgaggatgtcgtccagttcttgatgcccacccaagaagccctgcctgaaccc
ctgatggacgtgggccctgggctgggcattctgggtggtgttgctggagccaaggatgtg
tgttccagacacaccctgcaccaagggatctccccgagcccgagggcgtcagatgcccgc
agcccctgcacgccagcactccagtggcacactgtgggcacagtccgggcctgggagcat
aagaagaggtcctgcctgacgcagggcagagaacaagccttggaaatatctgtctccact
gcttgcattggctggcccgccgaaggccacactggttcacgggagaatgaggtctccaaa
aagtacagcgagattgaggagttttaccagaaactgagcagtcgttatgcagcagccagc
ctccccccactacccaggaaggtcctgtttgttggggagtctgacatccgggagaggaga
gccgtgttcaatgagatcctgcgctgtgtctccaaggatgccgagttggcaggcagccca
gagctgctagagttcttaggtaccagatccccaggggctgcagggctcaccagcagagat
tcctctgtcctggatggcacagacagtcagacagggaatgatgaagaggctttcgacttt
tttgaggagcaagaccaagtggcagaagagggtccgcccgtccagagcctgaagggcgag
gatgctgaggaatccttggaggaggaggaggcgctggaccctctgggcattatgcgctcc
aagaagcccaagaaacatcccaaagtggccgtgaaagccaagccctcgccccggctcacc
atctttgacgaggaggtggaccctgatgaggggctctttggcccgggcaggaagctgtct
ccacaggacccctcggaggacgtgtcatccgtggaccccctgaagctatttgatgatcct
gacctcggcggggccatccccctgggtgactccctcctgctgccagccgcctgtgagagt
ggagggcccacacccagcctcagccacagggacgcctccaaggaactgttcagagttgaa
gaggacttggaccagattctgaacctgggagctgagcccaaacccaagccccagcttaag
cccaagccaccagtggcagctaagccggtgatacccagaaaaccagctgttccccccaaa
gcgggcccggctgaagctgtggctgggcagcagaagccgcaggagcagatccaagccatg
gacgagatggacatcttgcagtacatccaggaccacgatacaccagcccaggccgccccc
agcctcttctga

>gi568815596r:20518990_20745508|GENSCAN_predicted_peptide_5|598_aa
MDLSAAAALCLWLLSACRPRDGLEAAAVLRAAGAGPVRSPGGGGGGGGGGRTLAQAAGAA
AVPAAAVPRARAARRAAGSGFRNGSVVPHHFMMSLYRSLAGRAPAGAAAVSASGHGRADT
ITGFTDQATQGTYASSVPAHPVRSWAETSPGAVPQLRYIWSRGPMRPTLRPAGPLEEAGG
GQDSLLGEWSGVASEPSEKKGGQELCSRESRREGLHGDESAAETGQSFLFDVSSLNDADE
VVGAELRVLRRGSPESGPGSWTSPPLLLLSTCPGAARAPRLLYSRAAEPLVGQRWEAFDV
ADAMRRHRREPRPPRAFCLLLRAVAGPVPSPLALRRLGFGWPGGGGSAAEERAVLVVSSR
TQRKESLFREIRAQARALGAALASEPLPDPGTGTASPRAVIGGRRRRRTALAGTRTAQGS
GGGAGRGHGRRGRSRCSRKPLHVDFKELGWDDWIIAPLDYEAYHCEGLCDFPLRSHLEPT
NHAIIQTLLNSMAPDAAPASCCVPARLSPISILYIDAANNVVYKQYEDMVVEACGCRERK
VFVLMLQLEARKSGSNNGLGNSKFQNGRTKGAKAKMPPTAVPLRVVPNVVMDACALVS

>gi568815596r:20518990_20745508|GENSCAN_predicted_CDS_5|1797_bp
atggacctgagcgccgccgccgcgctgtgcctttggctgctgagcgcctgccgcccccgc
gacgggctggaagcggccgccgtgctgcgagcggcgggggctgggccggtccggagccca
gggggcggcggcggcggcggcggcggcgggcggactcttgcccaggctgcgggcgccgcg
gctgtcccggccgccgcggttccccgggcccgcgccgcgcgccgcgccgcgggctccggc
ttcaggaacggctcggtggtgccgcaccacttcatgatgtcgctttaccggagcctggcc
gggagggctccggccggggcagccgctgtctccgcctcgggccatggtcgcgcggacacg
atcaccggcttcacagaccaggcgacccaaggtacttacgcctcttctgtgcccgcccat
cccgtcaggtcctgggctgagaccagccccggagccgtgccgcagctccgttacatttgg
agccgcggccccatgcggcccaccctcaggccggctggtcccctcgaggaggcaggcgga
ggccaagattcgcttcttggggaatggtctggagtggcctcggagccctcagagaagaaa
ggagggcaagagctgtgttcccgggagtcacggcgagagggactgcacggtgacgaatcg
gcagccgaaacaggccagagcttcctgttcgacgtgtccagccttaacgacgcagacgag
gtggtgggtgccgagctgcgcgtgctgcgccggggatctccagagtcgggcccaggcagc
tggacttctccgccgttgctgctgctgtccacgtgcccgggcgccgcccgagcgccacgc
ctgctgtactcgcgggcagctgagcccctagtcggtcagcgctgggaggcgttcgacgtg
gcggacgccatgaggcgccaccgtcgtgaaccgcgccccccccgcgcgttctgcctcttg
ctgcgcgcagtggcaggcccggtgccgagcccgttggcactgcggcggctgggcttcggc
tggccgggcggagggggctctgcggcagaggagcgcgcggtgctagtcgtctcctcccgc
acgcagaggaaagagagcttattccgggagatccgcgcccaggcccgcgcgctcggggcc
gctctggcctcagagccgctgcccgacccaggaaccggcaccgcgtcgccaagggcagtc
attggcggccgcagacggaggaggacggcgttggccgggacgcggacagcgcagggcagc
ggcgggggcgcgggccggggccacgggcgcaggggccggagccgctgcagccgcaagccg
ttgcacgtggacttcaaggagctcggctgggacgactggatcatcgcgccgctggactac
gaggcgtaccactgcgagggcctttgcgacttccctttgcgttcgcacctcgagcccacc
aaccatgccatcattcagacgctgctcaactccatggcaccagacgcggcgccggcctcc
tgctgtgtgccagcgcgcctcagccccatcagcatcctctacatcgacgccgccaacaac
gttgtctacaagcaatacgaggacatggtggtggaggcctgcggctgcagggagaggaag
gtgtttgtgctgatgttgcagttagaggcacgaaaatcaggtagcaacaacgggttagga
aattcgaagttccagaatgggagaaccaaaggggccaaggcaaagatgcctccaactgct
gttccattgagggtggtgcccaacgtggtcatggatgcatgtgctcttgtgtcctag

>gi568815596r:20518990_20745508|GENSCAN_predicted_peptide_6|91_aa
MEKTGEEITKEIIKENFPERKLVFDILKLTFYYGTIDPWCPKEYYEDIKKDFPEGDIRLC
EKNIPHAFITHFNQEMADMIADSLKDDLSKM

>gi568815596r:20518990_20745508|GENSCAN_predicted_CDS_6|276_bp
atggagaaaacaggggaagaaattaccaaagaaataataaaagaaaattttccagaaaga
aagttggtatttgacatcttgaaacttacattttattatggtactatagatccttggtgt
ccaaaagagtactatgaagacattaagaaggattttccagaaggagacattcgactctgt
gagaaaaacatacctcatgctttcatcacccattttaaccaggaaatggcagacatgatt
gctgactccctaaaggatgacttgtccaaaatgtaa

>gi568815596r:20518990_20745508|GENSCAN_predicted_peptide_7|377_aa
MGDFNTPLSILDKSMSQKVNKHIQDLNSALHQADLIDIYRTLHPKSTEYTFFSAPHGTYS
KIDPIVGSKALLSKCKRMEITTNCLSDHSAIKLELRIKKLGQNHTTTWKLNNLLLNDYWV
NNEMKAEIKMFFETNENKDTTYQDLWDTFKAVCRGKFVALNTHTGKQERSKINTLMSQLK
ELEKQEQANSTASRRQEITKIRAELKEVETQKTLQKINESRSWFFEKISKIDRLLARLIK
KKREKNQIDAIQNDKGDITTNLTEIQTTIREYYKHFYANKLENLEEMDKFLDTYTLPRLS
QEEVESLNRPITGSEIEAIINGLPTKKSPGPDRFIAEFYQRTNDKNHMIISIDAEKAFDK
IQQPFMLKTLNKLGSSG

>gi568815596r:20518990_20745508|GENSCAN_predicted_CDS_7|1134_bp
atgggagactttaacaccccactgtcaatattagacaaatcaatgagccagaaggttaac
aagcatatccaggacttgaactcagctctgcaccaagcagacctaatagacatctacaga
acactccaccccaaatcaacagaatataccttcttctcagcaccacatggcacttattcc
aaaattgaccccatagttggaagtaaagcactcctcagcaaatgtaaaagaatggaaatc
acaacaaactgtctctcagaccacagtgcaatcaaattagaactcaggattaagaaactt
ggtcaaaatcacacaactacatggaaactgaacaacctgctcctgaatgactactgggta
aataatgaaatgaaggcagaaataaagatgttctttgaaaccaatgagaacaaagacaca
acgtaccaggatctctgggacacatttaaagcagtgtgtagagggaaatttgtagcacta
aatacccacacaggaaagcaggaaagatctaaaatcaacaccctaatgtcacaattaaaa
gaactagagaagcaagagcaagcaaattcgacagctagcagaaggcaagaaataactaag
atcagagcagaactgaaagaggtagagacacaaaaaacccttcaaaaaatcaatgaatcc
aggagctggttttttgaaaagatcagcaaaattgatagactgctagcaagactaataaag
aagaaaagagagaagaatcaaatagatgcaatacaaaatgataaaggggatatcaccacc
aatctcacagaaatacaaactaccatcagagaatactataaacacttctacgcaaataaa
ctagaaaatctagaagaaatggataaattcctggacacatacaccctcccaagactaagc
caggaagaagtggaatctctgaatagaccaataacaggatctgaaattgaggcaataatc
aatggcctaccaaccaaaaaaagtccaggaccagacagattcatagccgaattctaccag
agaaccaacgacaaaaaccacatgattatctcaatagatgcggaaaaggcctttgacaaa
attcaacagcccttcatgctaaaaactctcaataaactaggttcttcaggttga