GENSCAN 1.0	Date run:  5-Nov-116	Time: 11:12:03

Sequence gi568815584r:34463125_34730152 : 267028 bp : 44.65% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.02 Intr -   6370   6281   90  1  0   95  115    54 0.789   8.99
 1.01 Init -   7362   7300   63  0  0   82  102    12 0.779   1.38
 1.00 Prom -  11293  11254   40                              -3.46

 2.00 Prom +  14171  14210   40                              -6.06
 2.01 Sngl +  22855  23328  474  0  0   91   47   491 0.997  41.41
 2.02 PlyA +  25576  25581    6                               1.05

 3.22 PlyA -  27557  27552    6                               1.05
 3.21 Term -  53462  53186  277  1  1   90   41   141 0.325   4.53
 3.20 Intr -  66351  66234  118  1  1    5   78    94 0.447  -0.38
 3.19 Intr -  70415  70320   96  0  0   45  111    82 0.900   6.18
 3.18 Intr -  73151  72970  182  1  2   21   57   175 0.944   7.21
 3.17 Intr -  76520  76431   90  1  0    7   80   206 0.028  10.81
 3.16 Intr -  78463  78292  172  2  1   23   29   136 0.006   0.20
 3.15 Intr -  83758  83598  161  0  2   64  111    44 0.027   3.93
 3.14 Intr -  93642  93490  153  2  0  127    9    64 0.016   1.59
 3.13 Intr -  94464  94280  185  0  2   32   14   163 0.089   1.89
 3.12 Intr - 101371 101240  132  1  0   59   52   108 0.341   5.14
 3.11 Intr - 104647 104562   86  2  2   98   67    28 0.231   1.24
 3.10 Intr - 104889 104730  160  0  1   57   79    54 0.147   0.96
 3.09 Intr - 106025 105592  434  0  2   67   38   385 0.001  24.77
 3.08 Intr - 130026 129921  106  0  1   75   69    75 0.930   4.09
 3.07 Intr - 134521 134426   96  1  0   62  116    27 0.858   3.11
 3.06 Intr - 140347 140224  124  0  1   62   76    60 0.980   2.79
 3.05 Intr - 142593 142472  122  0  2   75   94   107 0.996   9.29
 3.04 Intr - 145016 144906  111  2  0   64   97    75 0.989   6.58
 3.03 Intr - 146618 146514  105  2  0   70   94    83 0.982   7.51
 3.02 Intr - 166830 166783   48  0  0   58   83   118 0.794   7.18
 3.01 Init - 167028 166987   42  0  0   64   64    83 0.587   2.02
 3.00 Prom - 206389 206350   40                              -4.76

 4.00 Prom + 215476 215515   40                              -4.26
 4.01 Init + 223073 223202  130  1  1   59   32   130 0.671   4.81
 4.02 Term + 231202 231467  266  2  2  -11   42   435 0.530  24.67
 4.03 PlyA + 231684 231689    6                               1.05

 5.06 PlyA - 233793 233788    6                               1.05
 5.05 Term - 246311 246295   17  0  2  104   54    16 0.468  -1.80
 5.04 Intr - 250012 249936   77  0  2  100   87    32 0.985   3.46
 5.03 Intr - 250437 250130  308  0  2   90   70   222 0.989  15.85
 5.02 Intr - 251467 251414   54  1  0  116   95    60 0.971   8.68
 5.01 Init - 251778 251689   90  0  0   53   55   102 0.839   2.03

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  76504  76431   74  1  2  110   80   161 0.965  18.04
S.002 Intr - 112718 112632   87  2  0  123   86    60 0.871   9.47


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815584r:34463125_34730152|GENSCAN_predicted_peptide_1|51_aa
MNSSRAGSVLPALSLPQPLAKVGNTFSIEIFLDLKVRDDPRLINRDSQRQQ

>gi568815584r:34463125_34730152|GENSCAN_predicted_CDS_1|153_bp
atgaactcctcaagggctggctctgtgctacctgccctatcactcccacagcccctggca
aaggttggaaatacttttagtatagaaattttcttggatctgaaagtacgagatgatcca
cggttaataaacagggatagccagcggcagcag

>gi568815584r:34463125_34730152|GENSCAN_predicted_peptide_2|157_aa
MALKAKKEALAPPKAEAKAKALKAKKAVMKDVHIHKKRRPARHPPSRGPGHCDSRPPKYP
RKSAPRRNKLDRYAIIKFLWTTESAMKKIEDNTTYVFRVDVKANKQQIKQAVKKLPDNDA
AKVNTLIRPDGEKKAYVQLAPDYDVLDVAKKKWDHLN

>gi568815584r:34463125_34730152|GENSCAN_predicted_CDS_2|474_bp
atggcgttgaaagcaaagaaggaagcgcttgcccctcctaaagccgaagccaaagcgaag
gctttaaaggccaagaaggcagtgatgaaagatgtccacatccacaaaaaaagaagaccc
gcacgtcacccaccttccagaggcccaggacactgcgactcgaggccacccaaatatcct
cggaagagcgcccccaggagaaacaagcttgaccgttatgccatcatcaagtttctgtgg
accactgagtccgccatgaagaagatagaagacaacaccacatatgtgttcagggtggat
gttaaagccaacaagcagcagatcaaacaggctgtgaagaagctccctgacaatgatgcg
gccaaggtcaacaccctgattcggcccgatggagagaagaaggcatatgttcaactggct
ccagattacgatgttttggatgttgccaaaaaaaaatgggatcatctaaactga

>gi568815584r:34463125_34730152|GENSCAN_predicted_peptide_3|999_aa
MRACAGPRLGAAMMEGLDDGPDFLSEEDRGLKAINVDLQSDAALQVDISDALSERDKVKF
TVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQ
KLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRRDLNFHVFLE
YNQDLSVRGKNKKEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDAS
AKSDRMTRSHKMHRPGRMMPGVTVKDVNQQEFIRALAAFLRKSGKLKVPEWVDTVKLLAK
HKELAPYDENWLYTRAASTAWHLYLWGGAGVGSMTKIYGGCQRSGGMPGHFSRGSKNVAH
RVLQALEGLKMVEKDQDGGRKLTRQGQRDLDRIAGQDLLYRRSRSLVDYENANKALDKAR
AKNKDVLQAETSQQLCCQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKIS
DNCSINSSTQPEVILPPRGHFAISGDICGYHNWVFYGYYQYMPGQQERNSVSHKKKKKKK
KKKKKKKKKKKKNTIIIIVYLQIFPSVQKWFVVQRYTLNSTGARPPFQVPDSRPRAHLRP
TSPGDTQACPTPSVGPRSGSGRDRSAGDDPGKGVAKAGESANAVPHYHKLCSRVSHIWGN
RRGQHIRSAMDKPRPGKTTFVIMVSPLPEQQMKGLDLDPEARALGPAFIHWWTSHGLIFT
SEGYVKDKTHSASNGNSTVQTALGNMPLQATMNRLPDDYDPYAVEEPSDEEPALSSSEDE
VDVLLHGTPDQKRKLIRECLTGESESSSEDEFEKEMEAELNSTMKTMEDKLSSLGTGSSS
GNGKVATAPTRYYDDIYFDSDSEDEDRAVQVTKKKKKKQHKIPTNDELLYDPEKDNRDQA
WVDAQRRGHESYKTQYRAMFVMNCSINKEEVLRYKASENRKKRRVHKKMRSNREDAAEKA
ETDVEEIYHPVMCTECSTEVAVYDKDEVFHFFNVLASHS

>gi568815584r:34463125_34730152|GENSCAN_predicted_CDS_3|3000_bp
atgcgcgcctgcgccggccctcgcctcggagcagccatgatggaaggcctggacgacggc
ccggacttcctctcagaagaggaccgcggacttaaagcaataaatgtagatcttcaaagt
gatgctgctctgcaggtggacatttctgatgctcttagtgagcgggataaagtaaaattc
actgttcacacaaagagttcattgccaaattttaaacaaaacgagttttcagttgttcgg
caacatgaggaatttatctggcttcatgattcctttgttgaaaatgaagactatgcaggt
tatatcattccaccagcaccaccaagacctgattttgatgcttcaagggaaaaactacag
aagcttggtgaaggagaagggtcaatgacgaaggaagaattcacaaagatgaaacaggaa
ctggaagctgaatatttggcaatattcaagaagacagttgcgatgcatgaagtgttcctg
tgtcgtgtggcagcacatcctattttgagaagagatttaaatttccatgtcttcttggaa
tataatcaagatttgagtgtgcgaggaaaaaataaaaaagagaaacttgaagacttcttt
aaaaacatggttaaatcagcagatggagtaatcgtttcaggagtaaaggatgtagatgat
ttctttgagcacgaacgaacatttcttttggagtatcataaccgagttaaggatgcatct
gctaaatctgatagaatgacaagatcccacaaaatgcacaggccgggccgcatgatgcct
ggagttactgtaaaagatgtgaaccagcaggagttcatcagagctctggcagccttcctc
agaaagtctgggaagctgaaagtccccgaatgggtggacaccgtcaagctgctggccaag
cacaaagagcttgctccctacgatgagaactggttgtacacgcgagctgcttccacagcg
tggcacctgtacctctggggtggcgctggggttggctccatgaccaagatctatggggga
tgtcagagaagtggcggcatgcctggccactttagccgaggctccaagaatgtggcccac
cgggtcctccaagccctggaggggctaaaaatggtggaaaaggaccaagatgggggccgc
aaactgacacgtcagggacagagagatctggacagaatcgctggacaggatctcctgtat
cgaaggtctaggtcactagtggattatgaaaatgctaataaagcactggataaagcaaga
gcaaaaaataaagatgttctacaggccgaaacttcccaacaattatgttgtcagaaattt
gaaaaaatatctgagtctgcaaaacaagaacttatagattttaagacaagaagagttgct
gcattcagaaaaaatttagtggaactggcagagttagaactgaagcatgcaaagatttct
gataactgttctattaacagtagtactcaaccagaggtgattctgccccccagaggacat
tttgcaatatctggagacatttgtggttatcacaactgggtgttctatggttactaccag
tacatgcctggacaacaagagcgaaactccgtctcacataagaagaagaagaagaagaag
aagaagaagaagaagaagaagaagaagaagaagaagaatacaataataataatagtgtat
ttacagattttcccaagtgttcaaaaatggtttgttgtccagcgttatacacttaactcg
accggtgcacggcctccctttcaggtcccagactcccggccgcgcgcccacttgcgccca
accagccccggagacacccaggcctgtcccacgccgtcggtaggtccccggtccgggagc
gggagagaccggagcgccggggacgaccccggcaagggcgtggctaaggcaggggaaagc
gcgaacgcagtcccccactaccacaaattatgcagtcgagtttcccacatttggggaaat
cgcaggggtcagcacatccggagtgcaatggataagcctcgccctgggaaaaccaccttc
gtgatcatggtatctcccctgccagagcagcagatgaagggcctagacctggatccagaa
gctagggctctcggtccagcattcatccactggtggacatcacatgggcttatttttacc
agcgaaggttacgtgaaggacaaaacgcactcagccagcaacggaaactcaacagttcaa
acagcactggggaacatgccgctgcaggccaccatgaaccggcttccggatgactacgac
ccctacgcggttgaagagcctagcgacgaggagccggctttgagcagctctgaggatgaa
gtggatgtgcttttacatggaactcctgaccaaaaacgaaaactcatcagagaatgtctt
accggagaaagtgaatcatctagtgaagatgaatttgaaaaggagatggaagctgaatta
aattctaccatgaaaacaatggaggacaagttatcctctctgggaactggatcttcctca
ggaaatggaaaagttgcaacagctccgacaaggtactacgatgatatatattttgattct
gattccgaggatgaagacagagcagtacaggtgaccaagaaaaaaaagaagaaacaacac
aagattccaacaaatgacgaattactgtatgatcctgaaaaagataacagagatcaggcc
tgggttgatgcacagagaagggggcatgaatcatacaaaactcaatatagagcaatgttt
gtaatgaattgttctattaacaaagaggaggttctaagatataaagcctcagagaacagg
aagaaaaggcgggtccataagaagatgaggtctaaccgggaagatgctgccgagaaggca
gagacagatgtggaagaaatctatcacccagtcatgtgcactgaatgttccactgaagtg
gcagtctacgacaaggatgaagtctttcattttttcaatgttttagcaagccattcctaa

>gi568815584r:34463125_34730152|GENSCAN_predicted_peptide_4|131_aa
MSSELGKDFSAYSVENKQEVGKTIRTVTALVRDDSSPDQGDEKRHCDSRPPKYPRNSAPR
RNKLDRYAIIKFLWTTESAMKKIEDNTTLVFTVDVKANKQQIKQAVKKLCDIDAAKVNTL
IRPGGEKKAYV

>gi568815584r:34463125_34730152|GENSCAN_predicted_CDS_4|396_bp
atgagctctgagcttgggaaagatttctctgcctacagtgtggagaacaagcaggaggtg
ggcaagactataagaaccgtaacagccctggtgagagatgacagcagcccggaccagggg
gatgaaaaaagacactgcgactcgaggccacccaaatatcctcggaatagcgcccccagg
agaaacaagcttgaccgttatgccatcatcaagtttctgtggaccactgagtccgccatg
aagaagatagaagacaacaccacacttgtgttcacggtggatgttaaagccaacaagcag
cagatcaaacaggctgtgaagaagctctgtgacattgatgcggccaaggtcaacaccctg
attcggcctggtggagagaagaaggcatatgtttga

>gi568815584r:34463125_34730152|GENSCAN_predicted_peptide_5|181_aa
MLGGWRRLCQAPGLRYHRVAPPGLQGSRSECHRAEARAAAAATAEGTMASGVTVNDEVIK
VFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDIGDTVEDPYTSFVK
LLPLNDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTAHKE
V

>gi568815584r:34463125_34730152|GENSCAN_predicted_CDS_5|546_bp
atgctcgggggctggaggcggctctgccaggctcccgggctccgctaccaccgcgtcgcc
ccccccggcctgcagggctcgcgctctgagtgccacagagccgaagcccgagctgccgcc
gcagccacagccgagggcactatggcttctggagttacagtgaatgatgaagtcatcaaa
gtttttaatgatatgaaagtaaggaaatcttctacacaagaggagatcaaaaagagaaag
aaagcagttctcttctgtttaagcgatgacaaaagacaaataattgtagaggaagcaaag
cagatcttggtgggtgacattggtgatactgtagaggacccctacacatcttttgtgaag
ttgctacctctgaatgattgccgatatgctttgtacgatgccacatacgaaacaaaagag
tctaagaaagaagacctagtatttatattctgggctcctgaaagtgcacctttaaaaagc
aagatgatttatgctagctctaaagatgccattaaaaagaaatttacagcccataaagaa
gtctga