Result of FASTA (omim) for pF1KB6619
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6619, 412 aa
  1>>>pF1KB6619 412 - 412 aa - 412 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4405+/-0.000407; mu= 16.9664+/- 0.025
 mean_var=73.1285+/-14.778, 0's: 0 Z-trim(111.2): 35  B-trim: 0 in 0/53
 Lambda= 0.149979
 statistics sampled from 19766 (19777) to 19766 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.596), E-opt: 0.2 (0.232), width:  16
 Scan time:  7.240

The best scores are:                                      opt bits E(85289)
NP_446464 (OMIM: 215700,603470) argininosuccinate  ( 412) 2735 601.3 1.4e-171
NP_000041 (OMIM: 215700,603470) argininosuccinate  ( 412) 2735 601.3 1.4e-171
XP_005272257 (OMIM: 215700,603470) PREDICTED: argi ( 412) 2735 601.3 1.4e-171
XP_016870218 (OMIM: 215700,603470) PREDICTED: argi ( 444) 2735 601.4 1.5e-171
XP_011517007 (OMIM: 215700,603470) PREDICTED: argi ( 450) 2735 601.4 1.5e-171


>>NP_446464 (OMIM: 215700,603470) argininosuccinate synt  (412 aa)
 initn: 2735 init1: 2735 opt: 2735  Z-score: 3201.5  bits: 601.3 E(85289): 1.4e-171
Smith-Waterman score: 2735; 100.0% identity (100.0% similar) in 412 aa overlap (1-412:1-412)

               10        20        30        40        50        60
pF1KB6 MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_446 MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 IEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_446 IEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_446 KGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNTPDILEIEFKKGVPVKVTNVKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_446 MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNTPDILEIEFKKGVPVKVTNVKD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 GTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_446 GTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 TMDREVRKIKQGLGLKFAELVYTGFWHSPECEFVRHCIAKSQERVEGKVQVSVLKGQVYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_446 TMDREVRKIKQGLGLKFAELVYTGFWHSPECEFVRHCIAKSQERVEGKVQVSVLKGQVYI
              310       320       330       340       350       360

              370       380       390       400       410  
pF1KB6 LGRESPLSLYNEELVSMNVQGDYEPTDATGFININSLRLKEYHRLQSKVTAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_446 LGRESPLSLYNEELVSMNVQGDYEPTDATGFININSLRLKEYHRLQSKVTAK
              370       380       390       400       410  

>>NP_000041 (OMIM: 215700,603470) argininosuccinate synt  (412 aa)
 initn: 2735 init1: 2735 opt: 2735  Z-score: 3201.5  bits: 601.3 E(85289): 1.4e-171
Smith-Waterman score: 2735; 100.0% identity (100.0% similar) in 412 aa overlap (1-412:1-412)

               10        20        30        40        50        60
pF1KB6 MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 IEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 IEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 KGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNTPDILEIEFKKGVPVKVTNVKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNTPDILEIEFKKGVPVKVTNVKD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 GTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 TMDREVRKIKQGLGLKFAELVYTGFWHSPECEFVRHCIAKSQERVEGKVQVSVLKGQVYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 TMDREVRKIKQGLGLKFAELVYTGFWHSPECEFVRHCIAKSQERVEGKVQVSVLKGQVYI
              310       320       330       340       350       360

              370       380       390       400       410  
pF1KB6 LGRESPLSLYNEELVSMNVQGDYEPTDATGFININSLRLKEYHRLQSKVTAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LGRESPLSLYNEELVSMNVQGDYEPTDATGFININSLRLKEYHRLQSKVTAK
              370       380       390       400       410  

>>XP_005272257 (OMIM: 215700,603470) PREDICTED: arginino  (412 aa)
 initn: 2735 init1: 2735 opt: 2735  Z-score: 3201.5  bits: 601.3 E(85289): 1.4e-171
Smith-Waterman score: 2735; 100.0% identity (100.0% similar) in 412 aa overlap (1-412:1-412)

               10        20        30        40        50        60
pF1KB6 MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 IEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNTPDILEIEFKKGVPVKVTNVKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNTPDILEIEFKKGVPVKVTNVKD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 GTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 TMDREVRKIKQGLGLKFAELVYTGFWHSPECEFVRHCIAKSQERVEGKVQVSVLKGQVYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TMDREVRKIKQGLGLKFAELVYTGFWHSPECEFVRHCIAKSQERVEGKVQVSVLKGQVYI
              310       320       330       340       350       360

              370       380       390       400       410  
pF1KB6 LGRESPLSLYNEELVSMNVQGDYEPTDATGFININSLRLKEYHRLQSKVTAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LGRESPLSLYNEELVSMNVQGDYEPTDATGFININSLRLKEYHRLQSKVTAK
              370       380       390       400       410  

>>XP_016870218 (OMIM: 215700,603470) PREDICTED: arginino  (444 aa)
 initn: 2735 init1: 2735 opt: 2735  Z-score: 3201.0  bits: 601.4 E(85289): 1.5e-171
Smith-Waterman score: 2735; 100.0% identity (100.0% similar) in 412 aa overlap (1-412:33-444)

                                             10        20        30
pF1KB6                               MSSKGSVVLAYSGGLDTSCILVWLKEQGYD
                                     ::::::::::::::::::::::::::::::
XP_016 KRLAPDSRVVHCTVKTDSRRRELTPPIPDAMSSKGSVVLAYSGGLDTSCILVWLKEQGYD
             10        20        30        40        50        60  

               40        50        60        70        80        90
pF1KB6 VIAYLANIGQKEDFEEARKKALKLGAKKVFIEDVSREFVEEFIWPAIQSSALYEDRYLLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VIAYLANIGQKEDFEEARKKALKLGAKKVFIEDVSREFVEEFIWPAIQSSALYEDRYLLG
             70        80        90       100       110       120  

              100       110       120       130       140       150
pF1KB6 TSLARPCIARKQVEIAQREGAKYVSHGATGKGNDQVRFELSCYSLAPQIKVIAPWRMPEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TSLARPCIARKQVEIAQREGAKYVSHGATGKGNDQVRFELSCYSLAPQIKVIAPWRMPEF
            130       140       150       160       170       180  

              160       170       180       190       200       210
pF1KB6 YNRFKGRNDLMEYAKQHGIPIPVTPKNPWSMDENLMHISYEAGILENPKNQAPPGLYTKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YNRFKGRNDLMEYAKQHGIPIPVTPKNPWSMDENLMHISYEAGILENPKNQAPPGLYTKT
            190       200       210       220       230       240  

              220       230       240       250       260       270
pF1KB6 QDPAKAPNTPDILEIEFKKGVPVKVTNVKDGTTHQTSLELFMYLNEVAGKHGVGRIDIVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QDPAKAPNTPDILEIEFKKGVPVKVTNVKDGTTHQTSLELFMYLNEVAGKHGVGRIDIVE
            250       260       270       280       290       300  

              280       290       300       310       320       330
pF1KB6 NRFIGMKSRGIYETPAGTILYHAHLDIEAFTMDREVRKIKQGLGLKFAELVYTGFWHSPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NRFIGMKSRGIYETPAGTILYHAHLDIEAFTMDREVRKIKQGLGLKFAELVYTGFWHSPE
            310       320       330       340       350       360  

              340       350       360       370       380       390
pF1KB6 CEFVRHCIAKSQERVEGKVQVSVLKGQVYILGRESPLSLYNEELVSMNVQGDYEPTDATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CEFVRHCIAKSQERVEGKVQVSVLKGQVYILGRESPLSLYNEELVSMNVQGDYEPTDATG
            370       380       390       400       410       420  

              400       410  
pF1KB6 FININSLRLKEYHRLQSKVTAK
       ::::::::::::::::::::::
XP_016 FININSLRLKEYHRLQSKVTAK
            430       440    

>>XP_011517007 (OMIM: 215700,603470) PREDICTED: arginino  (450 aa)
 initn: 2735 init1: 2735 opt: 2735  Z-score: 3201.0  bits: 601.4 E(85289): 1.5e-171
Smith-Waterman score: 2735; 100.0% identity (100.0% similar) in 412 aa overlap (1-412:39-450)

                                             10        20        30
pF1KB6                               MSSKGSVVLAYSGGLDTSCILVWLKEQGYD
                                     ::::::::::::::::::::::::::::::
XP_011 GTPALFLRVVHCTVKTDSRRRELTPPIPDAMSSKGSVVLAYSGGLDTSCILVWLKEQGYD
       10        20        30        40        50        60        

               40        50        60        70        80        90
pF1KB6 VIAYLANIGQKEDFEEARKKALKLGAKKVFIEDVSREFVEEFIWPAIQSSALYEDRYLLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VIAYLANIGQKEDFEEARKKALKLGAKKVFIEDVSREFVEEFIWPAIQSSALYEDRYLLG
       70        80        90       100       110       120        

              100       110       120       130       140       150
pF1KB6 TSLARPCIARKQVEIAQREGAKYVSHGATGKGNDQVRFELSCYSLAPQIKVIAPWRMPEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TSLARPCIARKQVEIAQREGAKYVSHGATGKGNDQVRFELSCYSLAPQIKVIAPWRMPEF
      130       140       150       160       170       180        

              160       170       180       190       200       210
pF1KB6 YNRFKGRNDLMEYAKQHGIPIPVTPKNPWSMDENLMHISYEAGILENPKNQAPPGLYTKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YNRFKGRNDLMEYAKQHGIPIPVTPKNPWSMDENLMHISYEAGILENPKNQAPPGLYTKT
      190       200       210       220       230       240        

              220       230       240       250       260       270
pF1KB6 QDPAKAPNTPDILEIEFKKGVPVKVTNVKDGTTHQTSLELFMYLNEVAGKHGVGRIDIVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QDPAKAPNTPDILEIEFKKGVPVKVTNVKDGTTHQTSLELFMYLNEVAGKHGVGRIDIVE
      250       260       270       280       290       300        

              280       290       300       310       320       330
pF1KB6 NRFIGMKSRGIYETPAGTILYHAHLDIEAFTMDREVRKIKQGLGLKFAELVYTGFWHSPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NRFIGMKSRGIYETPAGTILYHAHLDIEAFTMDREVRKIKQGLGLKFAELVYTGFWHSPE
      310       320       330       340       350       360        

              340       350       360       370       380       390
pF1KB6 CEFVRHCIAKSQERVEGKVQVSVLKGQVYILGRESPLSLYNEELVSMNVQGDYEPTDATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CEFVRHCIAKSQERVEGKVQVSVLKGQVYILGRESPLSLYNEELVSMNVQGDYEPTDATG
      370       380       390       400       410       420        

              400       410  
pF1KB6 FININSLRLKEYHRLQSKVTAK
       ::::::::::::::::::::::
XP_011 FININSLRLKEYHRLQSKVTAK
      430       440       450




412 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:08:14 2016 done: Sat Nov  5 11:08:15 2016
 Total Scan time:  7.240 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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