GENSCAN 1.0	Date run:  5-Nov-116	Time: 10:53:58

Sequence gi568815575f:9553587_9815005 : 261419 bp : 45.70% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   6703   6924  222  0  0   61   92   109 0.561   6.92
 1.02 Term +   7930   8043  114  0  0   68   48    65 0.528  -0.93
 1.03 PlyA +   8405   8410    6                               1.05

 2.04 PlyA -   9128   9123    6                               1.05
 2.03 Term -  23986  23852  135  1  0   60   53    98 0.121   1.52
 2.02 Intr -  33681  33516  166  2  1   74   35   144 0.120   7.66
 2.01 Init -  37510  37449   62  1  2  100   36    79 0.519   2.64
 2.00 Prom -  44087  44048   40                              -4.86

 3.05 PlyA -  45106  45101    6                               1.05
 3.04 Term -  49448  49315  134  0  2   89   37    79 0.632   1.15
 3.03 Intr -  50162  50078   85  2  1  102  103    28 0.799   5.09
 3.02 Intr -  64172  64098   75  2  0   43   76    74 0.508   1.41
 3.01 Init -  75496  75458   39  1  0   76   72    73 0.659   4.69
 3.00 Prom -  75662  75623   40                              -5.16

 4.00 Prom +  79296  79335   40                              -3.16
 4.01 Init +  81467  81520   54  1  0   92   52    77 0.346   4.03
 4.02 Intr +  82212  82482  271  2  1   60   -3   134 0.157  -1.39
 4.03 Intr +  86687  86774   88  0  1  118  121    87 0.875  14.03
 4.04 Intr +  99979 100103  125  1  2   61   69    83 0.380   3.93
 4.05 Intr + 100629 100736  108  1  0   71  110    93 0.802  10.06
 4.06 Intr + 130457 130602  146  0  2  125   94   205 0.983  24.80
 4.07 Intr + 134431 134689  259  0  1  109   70   365 0.838  33.84
 4.08 Intr + 137993 138125  133  0  1   70   90    46 0.861   2.70
 4.09 Intr + 138527 138668  142  2  1   66   75    82 0.760   5.06
 4.10 Intr + 139563 139626   64  2  1   76  101    48 0.812   3.19
 4.11 Intr + 149920 150015   96  2  0   79   38    84 0.096   2.48
 4.12 Intr + 151407 151528  122  1  2   82   98    81 0.563   8.71
 4.13 Intr + 155662 155736   75  0  0  131   75    79 0.912  10.61
 4.14 Intr + 156047 156174  128  1  2   87  116   133 0.999  15.48
 4.15 Intr + 158025 158190  166  0  1   64  115   186 0.998  18.86
 4.16 Intr + 161316 161417  102  2  0  100   58   153 0.711  13.87
 4.17 Intr + 163533 163572   40  2  1   93   86    10 0.129  -0.90
 4.18 Intr + 163816 164026  211  2  1   58   79   104 0.067   4.47
 4.19 Term + 167052 167193  142  0  1   99   36    82 0.111   1.50
 4.20 PlyA + 170070 170075    6                               1.05

 5.12 PlyA - 171779 171774    6                               1.05
 5.11 Term - 172254 172160   95  1  2  126   49    62 0.598   4.09
 5.10 Intr - 186133 185875  259  1  1  126   74    95 0.485   8.94
 5.09 Intr - 187869 187752  118  2  1   86   78    44 0.955   3.67
 5.08 Intr - 190087 189979  109  2  1   88   19    87 0.754   1.14
 5.07 Intr - 192361 192305   57  2  0   81   80    34 0.613   0.76
 5.06 Intr - 192567 192458  110  2  2   76   99   161 0.999  15.93
 5.05 Intr - 195080 194988   93  1  0   87  111    85 0.026   9.78
 5.04 Intr - 205840 205746   95  1  2   78   51    55 0.089  -0.44
 5.03 Intr - 207240 207131  110  1  2   53  101    50 0.443   2.80
 5.02 Intr - 212212 211982  231  2  0   39   82   321 0.002  24.34
 5.01 Init - 226276 226216   61  1  1   83   46   109 0.947   7.61
 5.00 Prom - 230419 230380   40                              -5.46

 6.00 Prom + 230577 230616   40                              -6.86
 6.01 Init + 232960 233189  230  0  2  105   75   366 0.517  32.84
 6.02 Intr + 233378 233755  378  2  0   98    3   180 0.306   4.58
 6.03 Intr + 236779 236971  193  1  1   26   68   145 0.336   5.79
 6.04 Intr + 244565 244613   49  1  1   25   58    77 0.017  -3.35
 6.05 Term + 249934 250109  176  2  2  102   47    44 0.175  -0.38
 6.06 PlyA + 251661 251666    6                               1.05

 7.05 PlyA - 255569 255564    6                               1.05
 7.04 Term - 257139 256889  251  1  2   91   48    72 0.709  -0.63
 7.03 Intr - 258877 258331  547  1  1   19  108   228 0.965  10.36
 7.02 Intr - 259114 259032   83  2  2   61   77    86 0.994   4.16
 7.01 Init - 259402 259186  217  1  1   45   21   184 0.640   6.25

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr + 139736 139833   98  0  2   95   87    31 0.890   3.43
S.002 Init - 195058 194988   71  1  2   93  111   115 0.927  12.84
S.003 Init - 212231 211982  250  2  1   63   82   360 0.938  28.53
S.004 Term - 224868 224741  128  1  2   74   38    60 0.830  -1.96


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815575f:9553587_9815005|GENSCAN_predicted_peptide_1|111_aa
VRTGGTEDIWPKDTTAGTGWMVIRPQSLWRSICAVCCQASCIPDRVTGSVRVTSRKGSEA
KLPALLLTFTLESEDEYRNMFSGVKVKPCEIHTGEAADSSSSRWHEYGGGG

>gi568815575f:9553587_9815005|GENSCAN_predicted_CDS_1|336_bp
gtgagaacaggaggtactgaggacatctggcccaaggatactaccgctggcacggggtgg
atggtgattcgccctcagtccctctggcgcagcatctgtgctgtttgctgccaggccagc
tgcatcccagatagagtgacaggatctgttcgcgtcacatccagaaaaggctctgaggcc
aagctccctgcgttgcttctcactttcactctggaatcagaggatgagtatagaaacatg
ttctctggggtgaaagtgaagccttgtgaaattcatacaggtgaagctgctgatagcagc
tcttcccgatggcatgaatatggaggtggcggttga

>gi568815575f:9553587_9815005|GENSCAN_predicted_peptide_2|120_aa
MALPKIQPSFLALGSVLGRPWKSSKRKPRTADSSHSRHRWVSALPSDQKEGNLLRDEASS
ARCLQGSFGTFQGCTRMPEAPTVTTKNVSRHCEMAPGGWGGYKVTRFEKHYSKGIQYQRF

>gi568815575f:9553587_9815005|GENSCAN_predicted_CDS_2|363_bp
atggccttgcccaagatccaaccctcattcctggctctgggatctgtcctgggtcgtccc
tggaaaagctccaagcgcaagccgcggacagcagacagctctcactcccgacacagatgg
gtttccgccctgccatccgaccagaaggagggcaacctgctcagggatgaggcctccagc
gctcggtgcctccagggctccttcggtaccttccagggctgcacgcggatgccagaagca
cccactgtcaccaccaaaaatgtctccagacattgtgagatggcccctggagggtgggga
ggatacaaagtcacccgctttgagaagcactattctaaaggaattcagtaccagcggttt
tga

>gi568815575f:9553587_9815005|GENSCAN_predicted_peptide_3|110_aa
MQKKKIRIPQVEQELSVAYTFRHSKTLMGITEGSVTPQNWETIHVLSQPVGGTLLQQPQE
TNHHQHGCLKSKQIFLYSETSPMYHSMIYALGLLVHNDCSQVDEDKHFNI

>gi568815575f:9553587_9815005|GENSCAN_predicted_CDS_3|333_bp
atgcagaagaagaagatccgtattccacaagtagagcaggaactcagcgttgcttatact
ttccggcactccaagactcttatgggcatcactgaaggaagtgtgaccccacagaactgg
gagaccatacatgttttaagccagccagttggtggcacgttgctacagcagccccaggaa
acaaaccaccaccaacatggatgtctgaaaagtaaacaaatcttcctttactctgagact
tctccaatgtatcattcaatgatttatgcactggggcttctcgttcacaacgactgctcc
caggtggatgaagacaagcatttcaacatttaa

>gi568815575f:9553587_9815005|GENSCAN_predicted_peptide_4|823_aa
MGAGGAVSRRLLPVAAELEETQVKKDKGRTMPGNSTASHCPKDMNVHSSMVDPSQVPVSC
CLEKHNVVQPRSSIVFSHKRSEALERATTWMLWENMLSERSQMQEVTYCWSLQTASHFYD
RMLGSLLVHRSIHEVTIRNIEVTCSMTELAGASSSCCHRPAGRGAMQSVLHHFQRLRGRE
GGSHFINTSSPRGEAKMSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLV
PPAALISILQKGLQYVEAEISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQQAFREKLA
QQQASAAAAAAAATAAATAATTTSAGVSHQNPSKNREATVNGEENRAHSVNNHAKPMEID
GEVEIPSSKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLR
HCIREGGHDVPSNKDVTSLDWNTNGTLLATGSYDGFARIWTEDGRRVTPAVRGRLRGGGT
DARSQPQTHSLLEDRTPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVN
AIKWDPSGMLLASCSDDMTLKIWSMKQEVCIHDLQAHNKEIYTIKWSPTGPATSNPNSNI
MLASASFDSTVRLWDIERGVCTHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQS
GNLVHSYRGTGGIFEVCWNARGDKVGASASDGSLLQILGLKGTLARRKVVRKTLAGQGSV
FGVSSEIALQPVREVPAMPAGRRTSHLLVCMHLGSQQESSEEPRALWPQGSIGRTISPCQ
VEQVCCQVVDLGHPEGYCRTLGQLGKNRMETVGRQQSMRQFPG

>gi568815575f:9553587_9815005|GENSCAN_predicted_CDS_4|2472_bp
atgggggctggaggggccgtgtcccggcgcctccttcctgtggctgctgagttggaggag
actcaggtaaagaaggataaaggcagaacgatgccaggcaattccactgctagccattgc
cccaaggacatgaatgttcatagcagcatggttgacccaagccaggttcctgtcagctgc
tgcctggaaaaacacaacgtggttcagccacgcagtagcatagtattcagccataaaagg
agtgaagccctggaacgtgctacaacatggatgctctgggaaaacatgctcagtgaaaga
agccagatgcaagaggtcacatattgctggtccctgcagacggcttcccatttttatgac
cggatgctgggaagcctgctggtccacaggtccatacatgaagtcaccataagaaacatc
gaggtgacatgtagcatgaccgagctcgctggcgcctcttcatcgtgctgccaccgccct
gcaggaagaggggccatgcagtcagtcttgcaccactttcaacgtttgcgagggagagag
ggtggttcccacttcatcaacacctcatcgccgcgaggtgaggctaagatgagcataacc
agtgacgaggtgaactttctggtgtatcggtatctccaggagtcaggtttttcccactcg
gctttcacgtttgggattgagagccacatcagccagtccaacatcaatgggacgctagtg
ccaccggccgccctcatctccattctccagaagggcctgcagtatgtagaggccgagatc
agtatcaacgaggatggcacagtgttcgacggccgccccatagagtccctgtcactgata
gacgccgtgatgcccgacgtggtgcagacgcggcagcaggcattccgagagaagctcgct
cagcagcaagccagtgcggcggcggcggcggctgcggccacggcagcagcgacagcagcc
accacgacctcagccggcgtttcccaccaaaatccatcgaagaacagagaggccacggtg
aatggggaagagaacagagcacattcagtcaataatcacgcgaagccaatggaaatagat
ggagaggttgagattccatccagcaaagccacagtccttcggggccatgagtctgaggtg
ttcatttgtgcctggaatcctgtcagtgatttgctagcctccggatctggagactcaact
gcaaggatatggaacctgaatgagaatagcaacgggggctccacccagctcgtgttgagg
cactgtatacgagaggggggccatgacgtcccgagtaacaaagacgtcacctcactggac
tggaataccaatggaacactcttggctacgggttcatatgacggttttgcaagaatatgg
acggaagatggaaggcgggtgacccctgcagtccgtggacgcctgagaggaggtggaaca
gatgctcgctcccagccgcagacccactctctgctagaggacaggacccctgcccttgat
gtggactggcagaacaacacgacctttgcctcctgtagcacagacatgtgtatccatgtg
tgcaggctcggctgtgaccgcccagtcaaaaccttccagggacacacaaacgaggtcaac
gccatcaaatgggatccgtctggaatgttgctggcatcctgctcggatgacatgacattg
aagatctggagcatgaaacaggaggtgtgcatccatgatcttcaggctcacaataaagag
atctacaccatcaagtggagccccactgggcccgccaccagcaacccaaactccaacatc
atgttggcaagtgcttcgtttgattctacggtgcgactgtgggacatagaacgaggcgtc
tgcacccacacgctcacgaagcatcaggagcctgtctatagcgtagctttcagccctgat
gggaagtacttggccagtggatccttcgacaagtgcgtccatatctggaatactcagagt
ggaaatcttgtccacagctaccgaggcactggcggcatcttcgaggtgtgctggaacgcc
cgaggagacaaagtgggtgccagcgcgtccgacggctctttgcttcagatcttaggtctc
aagggcactttggcgcgtagaaaggtggtcaggaaaactctggctggacaagggtcagtc
ttcggggtcagcagcgagattgctctgcagccagtgagggaggtccccgccatgccggct
ggaagaagaacctcgcatcttttggtgtgtatgcaccttggcagccagcaggaaagcagc
gaagagccgcgcgccctctggcctcaagggagcattggcagaaccataagcccctgccaa
gtggagcaagtgtgttgccaggtggtggatttggggcaccctgaggggtactgcagaacc
ctgggacagctcgggaagaaccgcatggaaacagtgggcagacaacaaagcatgcggcag
ttcccaggataa

>gi568815575f:9553587_9815005|GENSCAN_predicted_peptide_5|445_aa
MVAECKENKISSGGTKKLQNWTFCCPTRDAATQLVLSFQPRAFHALCLGSGGLRLALGLL
QLLPGRRPAGPGSPATSPPASVRILRAAAACDLLGCLGMVIRSTVWLGFPNFVDSVSDMN
HTEIWPAAFCVGSAMWIQLLYSACFWWLFCYAVDAYLVIRRSAGLSTILLYHIMAWGLAT
LLCVEGAAMLYYPSVSRCERGLDHAIPHYVTMYLPLLLVLVANPILFQKTVTAGQLTSFV
ILQRHQQNTAAEMASLLKGRQGIYTENERRMGAVIKIRFFKIMLVLIICWLSNIINESLL
FYLEMQTDINGGSLKPVRTAAKTTWFIMGILNPAQGFLLSLAFYGWTGCSLGFQSPRKEI
QWESLTTSAAEGAHPSPLMPHENPASGKVSQVGGQTSDEALSMLSEGNALSATAGSDAST
IEIHTASESCNKNEGDPALPTHGDL

>gi568815575f:9553587_9815005|GENSCAN_predicted_CDS_5|1338_bp
atggtggctgagtgcaaggagaacaagatctccagtggaggaaccaagaagctgcagaac
tggaccttctgctgccccacgcgggacgcagccacgcagctcgtgctgagcttccagccg
cgggccttccacgcgctctgcctgggcagcggcgggctccgcttggcgctgggccttctg
cagctgctgcccggccgccggcccgcgggccccgggtcccccgcgacgtccccgccggcc
tcggtccgcatcctgcgcgctgccgctgcctgcgaccttctcggctgcctgggtatggtg
atccggtccaccgtgtggttaggattcccaaattttgttgacagcgtctcggatatgaac
cacacggaaatttggcctgctgctttctgcgtggggagtgcgatgtggatccagctgttg
tacagtgcctgcttctggtggctgttttgctatgcagtggatgcttatctggtgatccgg
agatcggcaggactgagcaccatcctgctgtatcacatcatggcgtggggcctggccacc
ctgctctgtgtggagggagccgccatgctctactacccttccgtgtccaggtgtgagcgg
ggcctggaccacgccatcccccactatgtcaccatgtacctgcccctgctgctggttctc
gtggcgaaccccatcctgttccaaaagacagtgactgcaggacagttgacctcatttgtc
atcctccagagacatcagcagaacacagctgcagaaatggcctctttacttaaaggaaga
caaggcatttacacggagaacgagaggaggatgggagccgtgatcaagatccgatttttc
aaaatcatgctggttttaattatttgttggttgtcgaatatcatcaatgaaagcctttta
ttctatcttgagatgcaaacagatatcaatggaggttctttgaaacctgtcagaactgca
gccaagaccacatggtttattatgggaatcctgaatccagcccagggatttctcttgtct
ttggccttctacggctggacaggatgcagcctgggttttcagtctcccaggaaggagatc
cagtgggaatcactgaccacctcggctgctgagggggctcacccatccccactgatgccc
catgaaaaccctgcttccgggaaggtgtctcaagtgggtgggcagacttctgacgaagcc
ctgagcatgctgtctgaaggtaatgccctgtctgccacagcaggttctgatgccagcaca
attgaaattcacactgcaagtgaatcctgcaacaaaaatgagggtgaccctgctctccca
acccatggagacctatga

>gi568815575f:9553587_9815005|GENSCAN_predicted_peptide_6|341_aa
MEGAEPRARPERLAEAETRAADGGRLVEVQLSGGAPWGFTLKGGREHGEPLVITKVRRPR
GAGADSRELAALRGASRGLAGSSGAPGPASGGLHLRGCLEASEGTCPRAVPTYVCLSGVP
GSAPLGPVPVITTKSRVAAVASATSRFPSAHQCLLTFGFQSQIHCALDTCANLEKPESLL
PKSRTRVLIIIKKFQMYLIRNVVANQALCEISVKVLKKRDLMNSAVGQERVTLNFVAAGG
FLCPDAVCGQHLHEGVLLLLQVSENQWVLAAYKEELGQPVEEAGLQRRVPGAFPTRWCSV
PPVRKKAELTATHYQIQEPLLSSWEGGFDEVLMNLGLVFTK

>gi568815575f:9553587_9815005|GENSCAN_predicted_CDS_6|1026_bp
atggagggcgccgagccccgcgcgcggcccgagcgcctggccgaggccgagacgcgggcg
gcggacggcgggcgcctggtggaggtgcagctgagcggcggcgccccgtggggcttcacc
ctgaagggcggccgcgagcacggcgagccgctggtcatcaccaaggtaaggcggccgcgg
ggcgcgggcgctgacagccgggagctggccgccctgcggggcgcgtcgaggggcctggcc
gggtcctctggcgctcccgggcccgccagtggcggcctgcacctgcggggctgcctggag
gccagcgaaggaacgtgtccccgagccgtccccacctatgtttgcctctctggggtccct
ggttcggcaccccttggacccgtgcctgtgatcactacgaaatccagagtagcagctgtc
gccagcgcaacttctcgattcccttcagcccatcaatgtttactgactttcggcttccag
tcccagatccactgcgcactggatacctgcgcaaacttagagaaacctgaaagcctgctt
cctaagagcaggacccgagttctaataataataaagaaattccagatgtatctcatcagg
aatgttgtagccaaccaagctctttgtgaaatatcagtaaaggttttgaaaaagagggac
ctgatgaattcagcagtgggtcaggagcgggtgactctcaactttgtggctgctggtgga
tttttgtgcccagatgcagtgtgcggtcaacatctgcacgagggagtgctgctgcttctc
caggtgtctgagaaccagtgggtactggccgcctacaaagaggagttaggacagcctgtg
gaggaagctggactccagagaagggtgcccggcgcttttcccacccgatggtgctccgtg
cctcctgtcaggaagaaagcagaactgactgccacacactaccagattcaggagcctctc
ctgtcttcctgggaaggtggttttgatgaggtactgatgaacttgggcctggtttttaca
aaatga

>gi568815575f:9553587_9815005|GENSCAN_predicted_peptide_7|365_aa
MTLDYRKLHQVVISVAAAVPDVVSLLEQTNTSPGTWYAAIDLANAFFSIPVHKAHQKQFV
FSSNIPLLSYLSDITLVHCIDDIIPIGSSEQEVANTLDLLQERGTTTLSGPIWILEATPH
LGVLLQPIYRVTRKAASFEWGPELEKALQQVQAAVQAALPLGPYDPMVPEVRVADKDAVW
SLWQAPISESQWRPLGFWSKALPSSADNYSPFEIKLLACYWALAETEHLTMGHQVTMRPE
LPIMNWMLSGPSSHKAGCAQQHSIIKWKWYIRDRAQAGPEGTTRIHESRNQGVQVEVAKL
TITPSDPLAKFLLPVPATLRSAGLGGLSSRGRNAATRRHNNDSIKLEVQIATWVLWAPPT
FKSTG

>gi568815575f:9553587_9815005|GENSCAN_predicted_CDS_7|1098_bp
atgacactggattatcgtaagcttcaccaagtggtgatttcagttgcagctgctgtacca
gatgtggtttcactgcttgagcaaactaacacatctcctggtacctggtatgcggccatt
gacttggcaaatgcctttttctccattcctgtccacaaggcccaccagaagcaatttgtc
ttcagcagcaatatacctttactgtcctacctcagtgacatcacactggtccactgcatt
gatgatattataccaattggatccagtgaacaagaagtagcaaacacactggacttattg
caagaaagaggcacaacaacgcttagtgggcctatttggattttggaggcaacacctcat
ttgggtgtgttactccaacccatttatcgagtgacccgaaaggctgccagttttgaatgg
ggtccagaactggagaaggctctgcaacaggtccaggctgctgtgcaagctgctctgcca
cttgggccgtatgatccaatggtgcctgaggtgagagtggcagataaggatgctgtttgg
agcctttggcaggcccccataagtgaatcacagtggaggcctctaggattttggagcaag
gccctgccatcttctgcagacaactactctccttttgagataaagctcttggcctgttac
tgggctttggcagaaactgaacatttgactatgggtcatcaagtcaccatgcgacctgaa
ctacctatcatgaactggatgctttctggcccatctagccataaagctgggtgtgcacag
cagcattccatcatcaaatggaagtggtatatacgtgatcgggctcaagcaggtcctgaa
ggcacaaccaggattcacgagtccagaaatcaaggggtgcaagtagaagtggcaaaactc
accatcacccctagtgatccactagcaaaatttttgcttcctgttcctgcaacattacgt
tctgctggcctagggggtcttagttccagagggaggaacgctgccaccaggagacacaac
aatgattccattaaactggaagttcagattgccacctgggtgctttgggctcctcctacc
tttaagtcaacaggctaa