GENSCAN 1.0	Date run:  5-Nov-116	Time: 10:48:18

Sequence gi568815586r:114255535_114503898 : 248364 bp : 44.05% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.05 PlyA -     51     46    6                               1.05
 1.04 Term -  38699  38604   96  2  0  113   48    55 0.305   1.97
 1.03 Intr -  39392  39361   32  0  2   98   78    21 0.164  -0.05
 1.02 Intr -  51589  51539   51  2  0   55   87    71 0.522   2.58
 1.01 Init -  52397  52322   76  2  1   85   36   113 0.479   7.05
 1.00 Prom -  57985  57946   40                              -3.76

 2.00 Prom +  58524  58563   40                              -5.56
 2.01 Init +  60695  60802  108  1  0   92   70    39 0.662   2.72
 2.02 Term +  63968  64177  210  1  0   66   52   138 0.597   5.29
 2.03 PlyA +  66428  66433    6                               1.05

 3.00 Prom +  71511  71550   40                              -3.36
 3.01 Init +  84237  84393  157  2  1   75   78    61 0.627   3.87
 3.02 Term +  91206  91318  113  1  2   66   44    96 0.443   1.72
 3.03 PlyA +  91546  91551    6                               1.05

 4.09 PlyA -  92983  92978    6                               1.05
 4.08 Term - 100572  99998  575  1  2  124   39   434 0.967  36.72
 4.07 Intr - 110857 110631  227  0  2   93  113   112 0.935  11.83
 4.06 Intr - 130033 129942   92  1  2  119   97    68 0.895   9.59
 4.05 Intr - 139359 139207  153  0  0   73  121    46 0.558   6.67
 4.04 Intr - 143186 143039  148  1  1   85   84   158 0.999  15.34
 4.03 Intr - 144098 143979  120  1  0  116   66   109 0.997  11.11
 4.02 Intr - 146386 146292   95  1  2  132  100    42 0.982   8.56
 4.01 Init - 148364 148218  147  2  0  110  110   212 0.632  25.69
 4.00 Prom - 148770 148731   40                             -10.45

 5.00 Prom + 148864 148903   40                             -10.25
 5.01 Init + 150175 150501  327  0  0   92   94   135 0.655  10.59
 5.02 Intr + 152260 152630  371  0  2   25   84   220 0.848   9.20
 5.03 Intr + 153373 153473  101  1  2   -3  110   101 0.798   2.95
 5.04 Intr + 158630 158735  106  0  1  114    0   154 0.777   8.47
 5.05 Intr + 159285 159433  149  0  2   85   92    55 0.766   5.48
 5.06 Intr + 162558 162687  130  1  1   83   77    54 0.798   3.55
 5.07 Intr + 187727 187772   46  2  1   34   86    74 0.186   0.21
 5.08 Intr + 188672 188761   90  1  0   70   43    76 0.239   1.49
 5.09 Intr + 191842 192016  175  0  1   15   89    73 0.112  -0.39
 5.10 Intr + 194575 194823  249  2  0   62   80   132 0.204   7.21
 5.11 Term + 202720 202739   20  2  2  110   47    11 0.131  -2.32
 5.12 PlyA + 204239 204244    6                               1.05

 6.06 PlyA - 211484 211479    6                               1.05
 6.05 Term - 224566 224480   87  1  0  120   45    45 0.496   1.06
 6.04 Intr - 225017 224920   98  0  2    2  107    89 0.181   1.93
 6.03 Intr - 225347 225244  104  1  2   19   67   106 0.144   1.42
 6.02 Intr - 236515 236447   69  0  0   96   96     3 0.242   0.20
 6.01 Init - 238876 238800   77  1  2   96  109     5 0.518   4.10
 6.00 Prom - 239404 239365   40                              -5.86

 7.03 PlyA - 239515 239510    6                               1.05
 7.02 Term - 241984 241911   74  2  2  114   41    41 0.560   0.07
 7.01 Intr - 245754 245613  142  0  1   99   28   129 0.897   7.93

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586r:114255535_114503898|GENSCAN_predicted_peptide_1|84_aa
MAAKIQAKKELPGFKEMQEGKYVMGITPAPAGGILSVLNGIQSCPKKGMSSGEAVEECGY
TSQTQWISGASQKQLSTGNHKRNQ

>gi568815586r:114255535_114503898|GENSCAN_predicted_CDS_1|255_bp
atggctgctaaaatccaagccaagaaagagcttcctggattcaaggaaatgcaagaaggc
aagtatgtcatgggcatcacccctgccccagccggtggcatcctgtccgttctgaacggg
atccaaagctgtcccaagaaaggcatgtcctcgggtgaggctgttgaagaatgtgggtat
acttcacagactcagtggatttctggagcatctcaaaaacaactcagcactggaaatcac
aagagaaatcaatga

>gi568815586r:114255535_114503898|GENSCAN_predicted_peptide_2|105_aa
MNQKTISGNSDDMCWQETGGPVKRSNCENLRMLFIKFSEAFTLHGVTTDFKAFSTLGSDS
WMCRWQEEEGAASRTPASCLLAKKRGLLQRPELIPPASQKANTLG

>gi568815586r:114255535_114503898|GENSCAN_predicted_CDS_2|318_bp
atgaatcagaaaactatcagcgggaattccgatgacatgtgttggcaggaaacaggcggc
ccagtcaaaaggagtaactgcgagaatttaaggatgctatttataaagttctccgaagcc
ttcaccctccacggcgtcactaccgacttcaaagccttctccacccttggaagtgactcg
tggatgtgtaggtggcaggaggaggagggagccgcgagcaggactccagcctcttgcctt
ttggcaaagaagcgagggctgctgcagaggccagaattaattcctcctgctagccagaag
gccaacacgttgggatga

>gi568815586r:114255535_114503898|GENSCAN_predicted_peptide_3|89_aa
MRLSPTIGHLQAEEQESQSESQNLKSREANSEANSVAFSLWPKAQEPLANHWCRGSLSSL
EIALLQKNRFVVELKVGCCQHALSLLPYV

>gi568815586r:114255535_114503898|GENSCAN_predicted_CDS_3|270_bp
atgaggttaagtcccacaataggccatctgcaagctgaggaacaagaaagccagtctgag
tcacaaaacctcaaaagcagggaagccaacagtgaagccaacagtgtagccttcagtctg
tggccaaaggcccaagagcccctggcaaaccactggtgccgagggagcctctcatcttta
gagatagccctgctgcagaaaaacagatttgtggtggagctcaaggtgggatgctgtcag
catgcactgagccttctgccctatgtctga

>gi568815586r:114255535_114503898|GENSCAN_predicted_peptide_4|518_aa
MADADEGFGLAHTPLEPDAKDLPCDSKPESALGAPSKSPSSPQAAFTQQGMEGIKVFLHE
RELWLKFHEVGTEMIITKAGRRMFPSYKVKVTGLNPKTKYILLMDIVPADDHRYKFADNK
WSVTGKAEPAMPGRLYVHPDSPATGAHWMRQLVSFQKLKLTNNHLDPFGHIILNSMHKYQ
PRLHIVKADENNGFGSKNTAFCTHVFPETAFIAVTSYQNHKITQLKIENNPFAKGFRGSD
DMELHRMSRMQSKEYPVVPRSTVRQKVASNHSPFSSESRALSTSSNLGSQYQCENGVSGP
SQDLLPPPNPYPLPQEHSQIYHCTKRKEEECSTTDHPYKKPYMETSPSEEDSFYRSSYPQ
QQGLGASYRTESAQRQACMYASSAPPSEPVPSLEDISCNTWPSMPSYSSCTVTTVQPMDR
LPYQHFSAHFTSGPLVPRLAGMANHGSPQLGEGMFQHQTSVAHQPVVRQCGPQTGLQSPG
TLQPPEFLYSHGVPRTLSPHQYHSVHGVGMVPEWSDNS

>gi568815586r:114255535_114503898|GENSCAN_predicted_CDS_4|1557_bp
atggccgacgcagacgagggctttggcctggcgcacacgcctctggagcctgacgcaaaa
gacctgccctgcgattcgaaacccgagagcgcgctcggggcccccagcaagtccccgtcg
tccccgcaggccgccttcacccagcagggcatggagggaatcaaagtgtttctccatgaa
agagaactgtggctaaaattccacgaagtgggcacggaaatgatcataaccaaggctgga
aggcggatgtttcccagttacaaagtgaaggtgacgggccttaatcccaaaacgaagtac
attcttctcatggacattgtacctgccgacgatcacagatacaaattcgcagataataaa
tggtctgtgacgggcaaagctgagcccgccatgcctggccgcctgtacgtgcacccagac
tcccccgccaccggggcgcattggatgaggcagctcgtctccttccagaaactcaagctc
accaacaaccacctggacccatttgggcatattattctaaattccatgcacaaataccag
cctagattacacatcgtgaaagcggatgaaaataatggatttggctcaaaaaatacagcg
ttctgcactcacgtctttcctgagactgcgtttatagcagtgacttcctaccagaaccac
aagatcacgcaattaaagattgagaataatccctttgccaaaggatttcggggcagtgat
gacatggagctgcacagaatgtcaagaatgcaaagtaaagaatatcccgtggtccccagg
agcaccgtgaggcaaaaagtggcctccaaccacagtcctttcagcagcgagtctcgagct
ctctccacctcatccaatttggggtcccaataccagtgtgagaatggtgtttccggcccc
tcccaggacctcctgcctccacccaacccatacccactgccccaggagcatagccaaatt
taccattgtaccaagaggaaagaggaagaatgttccaccacagaccatccctataagaag
ccctacatggagacatcacccagtgaagaagattccttctaccgctctagctatccacag
cagcagggcctgggtgcctcctacaggacagagtcggcacagcggcaagcttgcatgtat
gccagctctgcgccccccagcgagcctgtgcccagcctagaggacatcagctgcaacacg
tggccaagcatgccttcctacagcagctgcaccgtcaccaccgtgcagcccatggacagg
ctaccctaccagcacttctccgctcacttcacctcggggcccctggtccctcggctggct
ggcatggccaaccatggctccccacagctgggagagggaatgttccagcaccagacctcc
gtggcccaccagcctgtggtcaggcagtgtgggcctcagactggcctgcagtcccctggc
acccttcagccccctgagttcctctactctcatggcgtgccaaggactctatcccctcat
cagtaccactctgtgcacggagttggcatggtgccagagtggagcgacaatagctaa

>gi568815586r:114255535_114503898|GENSCAN_predicted_peptide_5|587_aa
MVAPGFMRGLLLTQNSGYCCLLGRTYRWSLRGDCPPPTHTSSAVRLLSLNTSQLASAKEH
KIASKSTGNHIISVPRSSFTPPGRESWKPSEWSKSFLSAAFRIKVPGFESSRVKLTSNYP
TSSLERKSQECASLESRAQVKTLKRTTKRDLFRPGLLPTSVKKSTYLPAQGWFVVSDKLN
ITVYYQAYPSKIKRQPGDSDYLTSRCTYRTWRRHESRNRPARCHVWLGGSGGRLSCKTYR
VDAPGGAERRARPAQHRAGERRAFRKGRAFKGFPAVPEYTWRLLPGVLERLRAQSAEGAP
VKILGYPPAQATPMLADIRLNVWGSSQISQPALLTSNGSHRSPASWFLVPVAPPLPSPSF
HPVVPSSPQGCLSYLPLRKNEASAHVLIVFTTLQSHEHTQKPKKLREDAKGSVCSLQRPS
CDQRSIKERRGQEFGIKGNTPAERGERVREGRFSFDSQTRAQPETARHRGVCLSERLLAG
PLLPRVNSRRSWTGVRARGNKQTNNQVLWVRITATDSNTKHDDDDDDDDDDNEANIYRPH
VSGSVLSASHVLTHLLFATTLEGRQYNCPILQPMTAEVVKSDSSMPN

>gi568815586r:114255535_114503898|GENSCAN_predicted_CDS_5|1764_bp
atggtggctccggggtttatgcggggtttactgcttacccagaatagcggctactgctgc
ctactagggcgcacctaccgctggagcctccgcggcgactgcccacctccaacacacacc
tcctctgctgtgcgcttgctctccctaaatacttcccagttggcaagcgccaaagaacac
aaaatagcctccaagagcaccggcaaccatataatctcagtgccccgctcctcctttaca
cccccagggagggaaagttggaagcccagtgaatggtcgaagtcctttctgagcgcagct
ttcaggattaaagttcccggattcgagtcctccagggtgaaactcacctccaactatccc
acctcttctttggagcgcaaaagccaggagtgcgcctcgctggagagcagggctcaggtg
aagactttgaaaaggaccaccaaaagagacctctttaggccaggtcttcttccaacgtct
gtcaagaagagcacgtacctcccagctcaaggttggtttgtggtctccgacaaattaaat
attactgtttattaccaggcataccccagtaaaataaagaggcaaccaggcgatagcgac
tatctcaccagccgctgcacctataggacttggagacgtcacgagtcacgcaaccggccc
gcgcgctgtcacgtttggctggggggcagcggcgggaggttgagttgcaaaacgtaccgc
gtagacgcccctggtggcgccgagagaagagctaggcctgcccagcacagagccggagag
cgtcgggccttccggaagggtagagcgtttaagggattcccagcagttcccgagtacacg
tggaggctgctccccggcgtgctggagcggctgcgggctcagtctgcggagggcgccccg
gtgaagatcctcggctaccccccagcccaggccacccccatgctagcagacatcaggctc
aacgtttggggttcctcccagatttctcagcctgctctgctcactagcaacggctcccac
aggagccccgcatcctggttcctggtccccgtggcaccaccactgccatcaccatccttc
cacccagtggtcccatctagcccccaaggatgcctgagctacctgccactgaggaaaaat
gaagcatcagctcatgtcctgatcgtgttcacaaccctccaaagccatgaacatactcag
aagcccaagaagctcagagaagatgccaaggggtctgtctgcagcctgcagcgccccagc
tgtgaccagagaagcattaaggagcggcgcgggcaagaatttggcatcaaaggaaatact
ccagcggagcggggtgagagggtgagagaaggacgcttctcctttgattcgcagacccgg
gcgcagccggagaccgcccggcaccgcggcgtctgtctgtctgagcgcctactcgcgggt
cctctgctgccccgagtgaactctaggcgcagctggaccggggtgagggcgcgcggaaac
aaacaaacaaacaaccaagttctttgggtcaggataacagccacagatagtaacactaaa
catgatgatgatgatgatgatgatgatgatgataatgaggccaatatttatcgaccacac
gtgtcaggttctgtgctaagtgcttcacatgtgctaactcatctgctctttgcaacaacc
ctagaaggcaggcaatacaattgccccattttacaaccaatgactgctgaagtcgtgaag
tcagactcctcaatgcctaattga

>gi568815586r:114255535_114503898|GENSCAN_predicted_peptide_6|144_aa
MVGRGQNRGLRGYQLLWEDFAASIPRGPCVGNSFQLDRAEMQFITPSRRRSFRSTQDFLL
RVRGRIGDPQLISVACRILPSPEGRRSIAPIRFSKSYEEPTTATTKRVKRLRTLTKTFFP
PKKERDQRKMFNVFGKRAPGALRT

>gi568815586r:114255535_114503898|GENSCAN_predicted_CDS_6|435_bp
atggtggggagaggacagaacagaggacttcgggggtaccagctcctctgggaagacttt
gctgcctccattcccagaggaccttgtgttggcaacagtttccaactggacagggcggag
atgcagttcataacaccctctagaaggcggagcttcaggagcacccaggatttcctgctc
cgagtccggggtcgcatcggagacccccagctaatcagcgtcgcctgccggatcttgcct
tctccagaaggcagacggtccatagctcccattagattttcaaagagctacgaggagccc
accaccgccaccaccaaaagggtgaaaaggttaaggacccttacaaagacatttttcccc
ccaaaaaaagagcgggatcaaagaaaaatgtttaacgttttcggcaagcgagcaccaggc
gccctgcgcacttaa

>gi568815586r:114255535_114503898|GENSCAN_predicted_peptide_7|71_aa
CLPLIELQIGGAGDEFNLKTSPPCAAKGNGVSATSKIDTVAQIYGQGGIRFLAKSNSDLK
TKRTPGNIIPA

>gi568815586r:114255535_114503898|GENSCAN_predicted_CDS_7|216_bp
tgtctgcccctgatcgagctgcagatcggaggggccggagacgagtttaatttaaagacg
agccccccttgtgctgctaaaggaaatggcgtgtcagctacgtcaaaaatagatactgtt
gcacagatatatggacagggaggaattcggtttttggccaagtctaattcagacctgaag
accaaaagaactcctggaaacataattccagcttaa